Glyma07g40330 - SoyBase

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Report for Sequence Feature Glyma07g40330

Feature Type:	gene_model
Chromosome:	Gm07
Start:	44591116
stop:	44594138
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma07g40330

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G09640	AT	Annotation by Michelle Graham. TAIR10: Translation elongation factor EF1B, gamma chain \| chr1:3120162-3122152 FORWARD LENGTH=414	SoyBase	E_val: 0	ISS
GO:0006414	GO-bp	Annotation by Michelle Graham. GO Biological Process: translational elongation	SoyBase	N/A	ISS
GO:0005737	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm	SoyBase	N/A	ISS
GO:0005773	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: vacuole	SoyBase	N/A	ISS
GO:0005829	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytosol	SoyBase	N/A	ISS
GO:0005853	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: eukaryotic translation elongation factor 1 complex	SoyBase	N/A	ISS
GO:0005886	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane	SoyBase	N/A	ISS
GO:0009506	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plasmodesma	SoyBase	N/A	ISS
GO:0003746	GO-mf	Annotation by Michelle Graham. GO Molecular Function: translation elongation factor activity	SoyBase	N/A	ISS
KOG1627	KOG	Translation elongation factor EF-1 gamma	JGI		ISS
PTHR11260	Panther	GLUTATHIONE S-TRANSFERASE, GST, SUPERFAMILY, GST DOMAIN CONTAINING	JGI		ISS
PTHR11260:SF7	Panther	ELONGATION FACTOR 1-GAMMA	JGI		ISS
PF00043	PFAM	Glutathione S-transferase, C-terminal domain	JGI		ISS
PF00647	PFAM	Elongation factor 1 gamma, conserved domain	JGI		ISS
PF02798	PFAM	Glutathione S-transferase, N-terminal domain	JGI		ISS
UniRef100_I1KNS9	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1KNS9_SOYBN	SoyBase	E_val: 0	ISS
UniRef100_Q8S3W1	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Elongation factor 1-gamma n=1 Tax=Glycine max RepID=Q8S3W1_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma07g40330

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma07g40330

Paralog	Evidence	Comments
Glyma17g00470	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma07g40330 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.07g273500	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma07g40330

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma07g40330

Limit To All Plant Sequences

>Glyma07g40330.2   sequence type=transcript   gene model=Glyma07g40330   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
CTTGTGCTGTGTTGAGATTTCTTTTTTGATGAACAGGTCCAGATCGTAATCAAGAGAAGAGGAGCGAGTTTTGTTTTTCCTTGCAGCCCAAGCCATGGCGCCTCTGATCCTGCATGGTGGAAAAACCAACAAAAATTCTTACAAGACACTCATTGCGGCGGAGTATGCCGGCGTCCAAGTTGACTTTGCCCCAAATTTTGAGATGGGTGTCTCCAATAAAACTCCTGAATTTCTCAAGATCAATCCTATTGGCAAGGTTCCTGTGTTGGAAACACCTGATGGTCCAGTATTCGAGAGCAATGCCATTGCTCGCTATGTTACCCAGCTGAAAGGTGATAACACTTTGTATGGATCTTCTTTGATTGAACATGCCCACATTGAACAATGGATTGATTTTTCATCATTGGAGATTGATGCTAATATTATCAAGTGGTATGCCCCAAGAGTTGGACGAGGACCATATCTTCCTCCAGCTGAGGAGGCTGCAATTTCTGCACTAAAGAGAGCTTTGGCTGCTTTGAACACTCACCTTGCTTCCAATACTTACCTGGTTGGGCATTCTGTGACCCTGGCTGACATCATAATGACATGCAATTTATATTTGGGTTTTGCAAACATCCTGGTTAAGTGCTTTACCTCTGAGTTTCCTCATGTTGAGAGATACTTTTGGACCTTGGTCAATCAGCCAAACTTCCGAAAAATAATTGGGCAGGTCAAGCAGGCTGAAACTATTCCTCCTGTTCAATCTGCAAAGAAGCCTTCCCAGCCAAAAGAATCCAAGCCCAAGGTAAAAAATGAACCAAAGAAAGAGGCAAACAAGGAGCCAGAAAAGCCCAAAGAAGAAGCAGAAGAGGAGGCTCCCAAGCCTAAAGCCAAGAATCCCCTTGATCTTCTCCCTCCAAGTCCGATGATACTGGATGAGTGGAAAAGACTCTACTCAAACACTAAAACCAACTTCAGGGAGGTTGCTATCAAAGGATTTTGGGACATGTATGATCCCGAGGGATACTCTCTCTGGTTTTGTGATTACAAATACAATCAGGAGAATACTGTTTCTTTTGTGACATTGAACAAGGTTGGTGGATTTCTTCAGCGGATGGATTTGGCTCGCAAGTATGCATTTGGAAAGATGCTTGTGATTGGATCAGATCCACCATTTAAGGTGAAGGGGCTGTGGCTTTTCCGTGGGCAAGAAATCCCTCAATTTGTGATTGATGAATGCTATGACATGGAGCTCTACGAATGGACTAAGGTTGACATCTCTGACGAACCTCAAAAGGAGCGTGTCAATCAGATGATTGAAGATTGTGAACCTTTTGAGGGCGAGGCTCTTTTGGATGCCAAGTGCTTCAAGTGAAAATTTATTCCTTGAAAGGGTCTACTTTTATAATGTGTCTTCGTTTTTGGTAGGGTACGGTTTCTTCACATTGAAACTTTATGTTTAATTTATTTTTAATTTTAATTTTAATGATAGCTAGACTAATATACAAGTGCTATATTTTTATGTTGGATGTAAGCATGTATTAATTACATTGATAGGTTTTCTTTTTCCCTGCCATGGGCTTTGAGGTAATCGATCAATTTTTGTTTGGTGGTTATAGGAGATTACGATGATACCGTAGTTAGATAAAAGTAAGATATGGTAAGAGTATGAAAAGTTCTTATATTTTGATGTTAATTAGATAAATCGTAAAGGTGGTATAATATAATTTAAAGGTTTTTAAAAGAATACAATAACATGTTTTAAATAATTGATATGATTTTATTATAATATATGTAATTGCTATTTTTAGTTTTCTTAGGAAATTTGAAAAATACTTGAATTGTAATTATTTAATTTAATTTTTAAAATGCTTCTATATAATTCAGTATATGGTATCATTTATTCCAAAGATCACACAAATAGAA

Coding sequences of Glyma07g40330

Limit To All Plant Sequences

>Glyma07g40330.1   sequence type=CDS   gene model=Glyma07g40330   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCGCCTCTGATCCTGCATGGTGGAAAAACCAACAAAAATTCTTACAAGACACTCATTGCGGCGGAGTATGCCGGCGTCCAAGTTGACTTTGCCCCAAATTTTGAGATGGGTGTCTCCAATAAAACTCCTGAATTTCTCAAGATCAATCCTATTGGCAAGGTTCCTGTGTTGGAAACACCTGATGGTCCAGTATTCGAGAGCAATGCCATTGCTCGCTATGTTACCCAGCTGAAAGGTGATAACACTTTGTATGGATCTTCTTTGATTGAACATGCCCACATTGAACAATGGATTGATTTTTCATCATTGGAGATTGATGCTAATATTATCAAGTGGTATGCCCCAAGAGTTGGACGAGGACCATATCTTCCTCCAGCTGAGGAGGCTGCAATTTCTGCACTAAAGAGAGCTTTGGCTGCTTTGAACACTCACCTTGCTTCCAATACTTACCTGGTTGGGCATTCTGTGACCCTGGCTGACATCATAATGACATGCAATTTATATTTGGGTTTTGCAAACATCCTGGTTAAGTGCTTTACCTCTGAGTTTCCTCATGTTGAGAGATACTTTTGGACCTTGGTCAATCAGCCAAACTTCCGAAAAATAATTGGGCAGGTCAAGCAGGCTGAAACTATTCCTCCTGTTCAATCTGCAAAGAAGCCTTCCCAGCCAAAAGAATCCAAGCCCAAGGTAAAAAATGAACCAAAGAAAGAGGCAAACAAGGAGCCAGAAAAGCCCAAAGAAGAAGCAGAAGAGGAGGCTCCCAAGCCTAAAGCCAAGAATCCCCTTGATCTTCTCCCTCCAAGTCCGATGATACTGGATGAGTGGAAAAGACTCTACTCAAACACTAAAACCAACTTCAGGGAGGTTGCTATCAAAGGATTTTGGGACATGTATGATCCCGAGGGATACTCTCTCTGGTTTTGTGATTACAAATACAATCAGGAGAATACTGTTTCTTTTGTGACATTGAACAAGGTTGGTGGATTTCTTCAGCGGATGGATTTGGCTCGCAAGTATGCATTTGGAAAGATGCTTGTGATTGGATCAGATCCACCATTTAAGGTGAAGGGGCTGTGGCTTTTCCGTGGGCAAGAAATCCCTCAATTTGTGATTGATGAATGCTATGACATGGAGCTCTACGAATGGACTAAGGTTGACATCTCTGACGAACCTCAAAAGGAGCGTGTCAATCAGATGATTGAAGATTGTGAACCTTTTGAGGGCGAGGCTCTTTTGGATGCCAAGTGCTTCAAGTGA

>Glyma07g40330.2   sequence type=CDS   gene model=Glyma07g40330   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCGCCTCTGATCCTGCATGGTGGAAAAACCAACAAAAATTCTTACAAGACACTCATTGCGGCGGAGTATGCCGGCGTCCAAGTTGACTTTGCCCCAAATTTTGAGATGGGTGTCTCCAATAAAACTCCTGAATTTCTCAAGATCAATCCTATTGGCAAGGTTCCTGTGTTGGAAACACCTGATGGTCCAGTATTCGAGAGCAATGCCATTGCTCGCTATGTTACCCAGCTGAAAGGTGATAACACTTTGTATGGATCTTCTTTGATTGAACATGCCCACATTGAACAATGGATTGATTTTTCATCATTGGAGATTGATGCTAATATTATCAAGTGGTATGCCCCAAGAGTTGGACGAGGACCATATCTTCCTCCAGCTGAGGAGGCTGCAATTTCTGCACTAAAGAGAGCTTTGGCTGCTTTGAACACTCACCTTGCTTCCAATACTTACCTGGTTGGGCATTCTGTGACCCTGGCTGACATCATAATGACATGCAATTTATATTTGGGTTTTGCAAACATCCTGGTTAAGTGCTTTACCTCTGAGTTTCCTCATGTTGAGAGATACTTTTGGACCTTGGTCAATCAGCCAAACTTCCGAAAAATAATTGGGCAGGTCAAGCAGGCTGAAACTATTCCTCCTGTTCAATCTGCAAAGAAGCCTTCCCAGCCAAAAGAATCCAAGCCCAAGGTAAAAAATGAACCAAAGAAAGAGGCAAACAAGGAGCCAGAAAAGCCCAAAGAAGAAGCAGAAGAGGAGGCTCCCAAGCCTAAAGCCAAGAATCCCCTTGATCTTCTCCCTCCAAGTCCGATGATACTGGATGAGTGGAAAAGACTCTACTCAAACACTAAAACCAACTTCAGGGAGGTTGCTATCAAAGGATTTTGGGACATGTATGATCCCGAGGGATACTCTCTCTGGTTTTGTGATTACAAATACAATCAGGAGAATACTGTTTCTTTTGTGACATTGAACAAGGTTGGTGGATTTCTTCAGCGGATGGATTTGGCTCGCAAGTATGCATTTGGAAAGATGCTTGTGATTGGATCAGATCCACCATTTAAGGTGAAGGGGCTGTGGCTTTTCCGTGGGCAAGAAATCCCTCAATTTGTGATTGATGAATGCTATGACATGGAGCTCTACGAATGGACTAAGGTTGACATCTCTGACGAACCTCAAAAGGAGCGTGTCAATCAGATGATTGAAGATTGTGAACCTTTTGAGGGCGAGGCTCTTTTGGATGCCAAGTGCTTCAAGTGA

Predicted protein sequences of Glyma07g40330

Limit To All Plant Sequences

>Glyma07g40330.1   sequence type=predicted peptide   gene model=Glyma07g40330   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAPLILHGGKTNKNSYKTLIAAEYAGVQVDFAPNFEMGVSNKTPEFLKINPIGKVPVLETPDGPVFESNAIARYVTQLKGDNTLYGSSLIEHAHIEQWIDFSSLEIDANIIKWYAPRVGRGPYLPPAEEAAISALKRALAALNTHLASNTYLVGHSVTLADIIMTCNLYLGFANILVKCFTSEFPHVERYFWTLVNQPNFRKIIGQVKQAETIPPVQSAKKPSQPKESKPKVKNEPKKEANKEPEKPKEEAEEEAPKPKAKNPLDLLPPSPMILDEWKRLYSNTKTNFREVAIKGFWDMYDPEGYSLWFCDYKYNQENTVSFVTLNKVGGFLQRMDLARKYAFGKMLVIGSDPPFKVKGLWLFRGQEIPQFVIDECYDMELYEWTKVDISDEPQKERVNQMIEDCEPFEGEALLDAKCFK*

>Glyma07g40330.2   sequence type=predicted peptide   gene model=Glyma07g40330   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAPLILHGGKTNKNSYKTLIAAEYAGVQVDFAPNFEMGVSNKTPEFLKINPIGKVPVLETPDGPVFESNAIARYVTQLKGDNTLYGSSLIEHAHIEQWIDFSSLEIDANIIKWYAPRVGRGPYLPPAEEAAISALKRALAALNTHLASNTYLVGHSVTLADIIMTCNLYLGFANILVKCFTSEFPHVERYFWTLVNQPNFRKIIGQVKQAETIPPVQSAKKPSQPKESKPKVKNEPKKEANKEPEKPKEEAEEEAPKPKAKNPLDLLPPSPMILDEWKRLYSNTKTNFREVAIKGFWDMYDPEGYSLWFCDYKYNQENTVSFVTLNKVGGFLQRMDLARKYAFGKMLVIGSDPPFKVKGLWLFRGQEIPQFVIDECYDMELYEWTKVDISDEPQKERVNQMIEDCEPFEGEALLDAKCFK*

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