Glyma07g40290 - SoyBase

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Integrating Genetics and Genomics to Advance Soybean Research

Report for Sequence Feature Glyma07g40290

Feature Type:	gene_model
Chromosome:	Gm07
Start:	44556590
stop:	44561997
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma07g40290

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT2G23390	AT	Annotation by Michelle Graham. TAIR10: CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF482 (InterPro:IPR007434), Acyl-CoA N-acyltransferase (InterPro:IPR016181); Has 2165 Blast hits to 2163 proteins in 543 species: Archae - 0; Bacteria - 1044; Metazoa - 0; Fungi - 0; Plants - 33; Viruses - 0; Other Eukaryotes - 1088 (source: NCBI BLink). \| chr2:9960568-9963476 REVERSE LENGTH=469	SoyBase	E_val: 0	ISS
GO:0000023	GO-bp	Annotation by Michelle Graham. GO Biological Process: maltose metabolic process	SoyBase	N/A	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0009637	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to blue light	SoyBase	N/A	ISS
GO:0010155	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of proton transport	SoyBase	N/A	ISS
GO:0019252	GO-bp	Annotation by Michelle Graham. GO Biological Process: starch biosynthetic process	SoyBase	N/A	ISS
GO:0019288	GO-bp	Annotation by Michelle Graham. GO Biological Process: isopentenyl diphosphate biosynthetic process, mevalonate-independent pathway	SoyBase	N/A	ISS
GO:0043085	GO-bp	Annotation by Michelle Graham. GO Biological Process: positive regulation of catalytic activity	SoyBase	N/A	ISS
GO:0046777	GO-bp	Annotation by Michelle Graham. GO Biological Process: protein autophosphorylation	SoyBase	N/A	ISS
GO:0003674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: molecular function	SoyBase	N/A	ISS
PF04339	PFAM	Protein of unknown function, DUF482	JGI		ISS
UniRef100_I1KNS3	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1KNS3_SOYBN	SoyBase	E_val: 0	ISS
UniRef100_Q7XRI2	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: P0076O17.10 protein n=1 Tax=Oryza sativa Japonica Group RepID=Q7XRI2_ORYSJ	SoyBase	E_val: 4.00E-171	ISS

Expression Patterns of Glyma07g40290

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma07g40290

Paralog	Evidence	Comments
Glyma17g00490	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma07g40290 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.07g273000	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma07g40290

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma07g40290

Limit To All Plant Sequences

>Glyma07g40290.2   sequence type=transcript   gene model=Glyma07g40290   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATTGTATTTGTGGGGAGAGAGAGCGAGTGGATGTGGTGTTCCGGAGAAGTTGGAATGGCAGCGGTTAGTGTTAGTGTTACTGTGAGAGTGAGGTGGTGCACTCGAAAACCACCCACTCCAACTCCAACCAGATTCAGCGTTAATGCTCTGTTTGGTGATTGGGGATTTGGGAATAGAACAAGGAACTCCCTTCAGCAGCAATTCACGTTCACTCTTGCTGATAGTAAAGTGATAAGCGTGTCGGTTGTTTCTTCGATCTCAGATGTTGCATCGAGCGAATGGGACGCTTGTGCTTTGGATGCGACTGGCCCTGACAACTTCAATCCATTCCTTTCGCATGCCTTTTTGTCGACCTTAGAGCACTCTGCTTCCGCTGTCAGGGAAACTGGTTGGATCCCACACCACATCGTTGCCAAAGCCAACAACAACAGCAACAACAACGTTGTAGCCGTTGTCCCACTCTATCTTAAAACCCACTCCTACGGCGAATTTGTTTTTGATCATTCTTGGGCTAATGCTTACCATTCTTATGGCTACAATTATTACCCCAAGTTACAATCTTGTGTCCCCTTCACACCTGTAACTGGTCCAAGGATCTTACTTCGTAACACCTCCTTCAAACATCAAGTTTTCGACATTATTGTCTCCGCAATGAAGGAACTCGCTCTCACCTCCCAGCTTTCATCATTACATGTTACTTTTCCCTCTGAAAATGAGTGGCACAAGCTCACTGAGAAAGGCTTCCTCCCCAGGATTGGAATGCAGTACCACTGGAAAAACCGTAACTACAAAAATTTTGATGACTTCTTGATGGACATGAAGCAAAGTAAAAGAAAAAATATACGTCAAGAGCGCAAAAAGATCTCAGCCCAGAACTTGATTATGAAACGCCTCCGGGGTTATGAAATAAAGGCTAGGCACTGGGATTCCTTCTACTCTTTTTACAGGAACACAACTGATAACAAATGGGGCACTCCTCACCTGACAAGGGAATTTTTTCATGAGCTGGGAGCAAAAATGGGAGATAATGTGCTACTTGTGGTGGCTGAAGAAGGGGATGAACTAGTTGCTGGAGCCCTAAATCTTATCGGAGGAGATACCTTGTTTGGGCGCCTATGGGGATGTCAGCCACGAAGTTACTACCCAAGTTTGCATTTTGAAGCGTGTTATTACCAGGCAATTGAAGCAGCTATTGAACTCAATCTTAAAACTGTAGAGGCAGGAGCTCAGGGTGAACACAAGATTCAGCGGGGATATCTTCCTGTGACAACTTATAGCTGCCATTACCTTATTGATGAAGAATTTAGAGAAGCTATACAAGATTTTTTAATACGTGAAGCTGCTCAGAATGTGAGTGATTTTAGTATTCGAGCTAACCATTTGGGCACTGTTTGAAGAATGTTCCACAATTCACGTGTTGTAAAATAGTTTATTTACCGTGACTTTTTTGGCTCTACAGGTGAAGCTAGTTATAAAACTCTTGCATGATTCTGGTCCTTTTAAGGA

>Glyma07g40290.3   sequence type=transcript   gene model=Glyma07g40290   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATTGTATTTGTGGGGAGAGAGAGCGAGTGGATGTGGTGTTCCGGAGAAGTTGGAATGGCAGCGGTTAGTGTTAGTGTTACTGTGAGAGTGAGGTGGTGCACTCGAAAACCACCCACTCCAACTCCAACCAGATTCAGCGTTAATGCTCTGTTTGGTGATTGGGGATTTGGGAATAGAACAAGGAACTCCCTTCAGCAGCAATTCACGTTCACTCTTGCTGATAGTAAAGTGATAAGCGTGTCGGTTGTTTCTTCGATCTCAGATGTTGCATCGAGCGAATGGGACGCTTGTGCTTTGGATGCGACTGGCCCTGACAACTTCAATCCATTCCTTTCGCATGCCTTTTTGTCGACCTTAGAGCACTCTGCTTCCGCTGTCAGGGAAACTGGTTGGATCCCACACCACATCGTTGCCAAAGCCAACAACAACAGCAACAACAACGTTGTAGCCGTTGTCCCACTCTATCTTAAAACCCACTCCTACGGCGAATTTGTTTTTGATCATTCTTGGGCTAATGCTTACCATTCTTATGGCTACAATTATTACCCCAAGTTACAATCTTGTGTCCCCTTCACACCTGTAACTGGTCCAAGGATCTTACTTCGTAACACCTCCTTCAAACATCAAGTTTTCGACATTATTGTCTCCGCAATGAAGGAACTCGCTCTCACCTCCCAGCTTTCATCATTACATGTTACTTTTCCCTCTGAAAATGAGTGGCACAAGCTCACTGAGAAAGGCTTCCTCCCCAGGATTGGAATGCAGTACCACTGGAAAAACCGTAACTACAAAAATTTTGATGACTTCTTGATGGACATGAAGCAAAGTAAAAGAAAAAATATACGTCAAGAGCGCAAAAAGATCTCAGCCCAGAACTTGATTATGAAACGCCTCCGGGGTTATGAAATAAAGGCTAGGCACTGGGATTCCTTCTACTCTTTTTACAGGAACACAACTGATAACAAATGGGGCACTCCTCACCTGACAAGGGAATTTTTTCATGAGCTGGGAGCAAAAATGGGAGATAATGTGCTACTTGTGGTGGCTGAAGAAGGGGATGAACTAGTTGCTGGAGCCCTAAATCTTATCGGAGGAGATACCTTGTTTGGGCGCCTATGGGGATGTCAGCCACGAAGTTACTACCCAAGTTTGCATTTTGAAGCGTGTTATTACCAGGCAATTGAAGCAGCTATTGAACTCAATCTTAAAACTGTAGAGGCAGGAGCTCAGGGTGAACACAAGATTCAGCGGGGATATCTTCCTGTGACAACTTATAGCTGCCATTACCTTATTGATGAAGAATTTAGAGAAGCTATACAAGATTTTTTAATACGTGAAGCTGCTCAGGTATGATGAATTGTCAGTTAAAGTAATTCCTTTGAACTTATTGAAGAAATGCAGCCAAGATTTATATTTTGATCTGCATCTTTACTTACTCTTGTTTAAGTATTACAAACATTTATCTAGTAAAATCGTATGACATGATATGATTGTAAAATACTTTTAGTTGGCATTTCTCCTATTAGGATTTCTCCTCAATCATTAAAGCCGTGATGATGGGA

Coding sequences of Glyma07g40290

Limit To All Plant Sequences

>Glyma07g40290.1   sequence type=CDS   gene model=Glyma07g40290   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTGGTGTTCCGGAGAAGTTGGAATGGCAGCGGTTAGTGTTAGTGTTACTGTGAGAGTGAGGTGGTGCACTCGAAAACCACCCACTCCAACTCCAACCAGATTCAGCGTTAATGCTCTGTTTGGTGATTGGGGATTTGGGAATAGAACAAGGAACTCCCTTCAGCAGCAATTCACGTTCACTCTTGCTGATAGTAAAGTGATAAGCGTGTCGGTTGTTTCTTCGATCTCAGATGTTGCATCGAGCGAATGGGACGCTTGTGCTTTGGATGCGACTGGCCCTGACAACTTCAATCCATTCCTTTCGCATGCCTTTTTGTCGACCTTAGAGCACTCTGCTTCCGCTGTCAGGGAAACTGGTTGGATCCCACACCACATCGTTGCCAAAGCCAACAACAACAGCAACAACAACGTTGTAGCCGTTGTCCCACTCTATCTTAAAACCCACTCCTACGGCGAATTTGTTTTTGATCATTCTTGGGCTAATGCTTACCATTCTTATGGCTACAATTATTACCCCAAGTTACAATCTTGTGTCCCCTTCACACCTGTAACTGGTCCAAGGATCTTACTTCGTAACACCTCCTTCAAACATCAAGTTTTCGACATTATTGTCTCCGCAATGAAGGAACTCGCTCTCACCTCCCAGCTTTCATCATTACATGTTACTTTTCCCTCTGAAAATGAGTGGCACAAGCTCACTGAGAAAGGCTTCCTCCCCAGGATTGGAATGCAGTACCACTGGAAAAACCGTAACTACAAAAATTTTGATGACTTCTTGATGGACATGAAGCAAAGTAAAAGAAAAAATATACGTCAAGAGCGCAAAAAGATCTCAGCCCAGAACTTGATTATGAAACGCCTCCGGGGTTATGAAATAAAGGCTAGGCACTGGGATTCCTTCTACTCTTTTTACAGGAACACAACTGATAACAAATGGGGCACTCCTCACCTGACAAGGGAATTTTTTCATGAGCTGGGAGCAAAAATGGGAGATAATGTGCTACTTGTGGTGGCTGAAGAAGGGGATGAACTAGTTGCTGGAGCCCTAAATCTTATCGGAGGAGATACCTTGTTTGGGCGCCTATGGGGATGTCAGCCACGAAGTTACTACCCAAGTTTGCATTTTGAAGCGTGTTATTACCAGGCAATTGAAGCAGCTATTGAACTCAATCTTAAAACTGTAGAGGCAGGAGCTCAGGGTGAACACAAGATTCAGCGGGGATATCTTCCTGTGACAACTTATAGCTGCCATTACCTTATTGATGAAGAATTTAGAGAAGCTATACAAGATTTTTTAATACGTGAAGCTGCTCAGGTGAAGCTAGTTATAAAACTCTTGCATGATTCTGGTCCTTTTAAGGAAGGTATCCTTTAG

>Glyma07g40290.2   sequence type=CDS   gene model=Glyma07g40290   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATTGTATTTGTGGGGAGAGAGAGCGAGTGGATGTGGTGTTCCGGAGAAGTTGGAATGGCAGCGGTTAGTGTTAGTGTTACTGTGAGAGTGAGGTGGTGCACTCGAAAACCACCCACTCCAACTCCAACCAGATTCAGCGTTAATGCTCTGTTTGGTGATTGGGGATTTGGGAATAGAACAAGGAACTCCCTTCAGCAGCAATTCACGTTCACTCTTGCTGATAGTAAAGTGATAAGCGTGTCGGTTGTTTCTTCGATCTCAGATGTTGCATCGAGCGAATGGGACGCTTGTGCTTTGGATGCGACTGGCCCTGACAACTTCAATCCATTCCTTTCGCATGCCTTTTTGTCGACCTTAGAGCACTCTGCTTCCGCTGTCAGGGAAACTGGTTGGATCCCACACCACATCGTTGCCAAAGCCAACAACAACAGCAACAACAACGTTGTAGCCGTTGTCCCACTCTATCTTAAAACCCACTCCTACGGCGAATTTGTTTTTGATCATTCTTGGGCTAATGCTTACCATTCTTATGGCTACAATTATTACCCCAAGTTACAATCTTGTGTCCCCTTCACACCTGTAACTGGTCCAAGGATCTTACTTCGTAACACCTCCTTCAAACATCAAGTTTTCGACATTATTGTCTCCGCAATGAAGGAACTCGCTCTCACCTCCCAGCTTTCATCATTACATGTTACTTTTCCCTCTGAAAATGAGTGGCACAAGCTCACTGAGAAAGGCTTCCTCCCCAGGATTGGAATGCAGTACCACTGGAAAAACCGTAACTACAAAAATTTTGATGACTTCTTGATGGACATGAAGCAAAGTAAAAGAAAAAATATACGTCAAGAGCGCAAAAAGATCTCAGCCCAGAACTTGATTATGAAACGCCTCCGGGGTTATGAAATAAAGGCTAGGCACTGGGATTCCTTCTACTCTTTTTACAGGAACACAACTGATAACAAATGGGGCACTCCTCACCTGACAAGGGAATTTTTTCATGAGCTGGGAGCAAAAATGGGAGATAATGTGCTACTTGTGGTGGCTGAAGAAGGGGATGAACTAGTTGCTGGAGCCCTAAATCTTATCGGAGGAGATACCTTGTTTGGGCGCCTATGGGGATGTCAGCCACGAAGTTACTACCCAAGTTTGCATTTTGAAGCGTGTTATTACCAGGCAATTGAAGCAGCTATTGAACTCAATCTTAAAACTGTAGAGGCAGGAGCTCAGGGTGAACACAAGATTCAGCGGGGATATCTTCCTGTGACAACTTATAGCTGCCATTACCTTATTGATGAAGAATTTAGAGAAGCTATACAAGATTTTTTAATACGTGAAGCTGCTCAGAATGTGAGTGATTTTAGTATTCGAGCTAACCATTTGGGCACTGTTTGA

>Glyma07g40290.3   sequence type=CDS   gene model=Glyma07g40290   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATTGTATTTGTGGGGAGAGAGAGCGAGTGGATGTGGTGTTCCGGAGAAGTTGGAATGGCAGCGGTTAGTGTTAGTGTTACTGTGAGAGTGAGGTGGTGCACTCGAAAACCACCCACTCCAACTCCAACCAGATTCAGCGTTAATGCTCTGTTTGGTGATTGGGGATTTGGGAATAGAACAAGGAACTCCCTTCAGCAGCAATTCACGTTCACTCTTGCTGATAGTAAAGTGATAAGCGTGTCGGTTGTTTCTTCGATCTCAGATGTTGCATCGAGCGAATGGGACGCTTGTGCTTTGGATGCGACTGGCCCTGACAACTTCAATCCATTCCTTTCGCATGCCTTTTTGTCGACCTTAGAGCACTCTGCTTCCGCTGTCAGGGAAACTGGTTGGATCCCACACCACATCGTTGCCAAAGCCAACAACAACAGCAACAACAACGTTGTAGCCGTTGTCCCACTCTATCTTAAAACCCACTCCTACGGCGAATTTGTTTTTGATCATTCTTGGGCTAATGCTTACCATTCTTATGGCTACAATTATTACCCCAAGTTACAATCTTGTGTCCCCTTCACACCTGTAACTGGTCCAAGGATCTTACTTCGTAACACCTCCTTCAAACATCAAGTTTTCGACATTATTGTCTCCGCAATGAAGGAACTCGCTCTCACCTCCCAGCTTTCATCATTACATGTTACTTTTCCCTCTGAAAATGAGTGGCACAAGCTCACTGAGAAAGGCTTCCTCCCCAGGATTGGAATGCAGTACCACTGGAAAAACCGTAACTACAAAAATTTTGATGACTTCTTGATGGACATGAAGCAAAGTAAAAGAAAAAATATACGTCAAGAGCGCAAAAAGATCTCAGCCCAGAACTTGATTATGAAACGCCTCCGGGGTTATGAAATAAAGGCTAGGCACTGGGATTCCTTCTACTCTTTTTACAGGAACACAACTGATAACAAATGGGGCACTCCTCACCTGACAAGGGAATTTTTTCATGAGCTGGGAGCAAAAATGGGAGATAATGTGCTACTTGTGGTGGCTGAAGAAGGGGATGAACTAGTTGCTGGAGCCCTAAATCTTATCGGAGGAGATACCTTGTTTGGGCGCCTATGGGGATGTCAGCCACGAAGTTACTACCCAAGTTTGCATTTTGAAGCGTGTTATTACCAGGCAATTGAAGCAGCTATTGAACTCAATCTTAAAACTGTAGAGGCAGGAGCTCAGGGTGAACACAAGATTCAGCGGGGATATCTTCCTGTGACAACTTATAGCTGCCATTACCTTATTGATGAAGAATTTAGAGAAGCTATACAAGATTTTTTAATACGTGAAGCTGCTCAGGTATGA

Predicted protein sequences of Glyma07g40290

Limit To All Plant Sequences

>Glyma07g40290.1   sequence type=predicted peptide   gene model=Glyma07g40290   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MWCSGEVGMAAVSVSVTVRVRWCTRKPPTPTPTRFSVNALFGDWGFGNRTRNSLQQQFTFTLADSKVISVSVVSSISDVASSEWDACALDATGPDNFNPFLSHAFLSTLEHSASAVRETGWIPHHIVAKANNNSNNNVVAVVPLYLKTHSYGEFVFDHSWANAYHSYGYNYYPKLQSCVPFTPVTGPRILLRNTSFKHQVFDIIVSAMKELALTSQLSSLHVTFPSENEWHKLTEKGFLPRIGMQYHWKNRNYKNFDDFLMDMKQSKRKNIRQERKKISAQNLIMKRLRGYEIKARHWDSFYSFYRNTTDNKWGTPHLTREFFHELGAKMGDNVLLVVAEEGDELVAGALNLIGGDTLFGRLWGCQPRSYYPSLHFEACYYQAIEAAIELNLKTVEAGAQGEHKIQRGYLPVTTYSCHYLIDEEFREAIQDFLIREAAQVKLVIKLLHDSGPFKEGIL*

>Glyma07g40290.2   sequence type=predicted peptide   gene model=Glyma07g40290   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
IVFVGRESEWMWCSGEVGMAAVSVSVTVRVRWCTRKPPTPTPTRFSVNALFGDWGFGNRTRNSLQQQFTFTLADSKVISVSVVSSISDVASSEWDACALDATGPDNFNPFLSHAFLSTLEHSASAVRETGWIPHHIVAKANNNSNNNVVAVVPLYLKTHSYGEFVFDHSWANAYHSYGYNYYPKLQSCVPFTPVTGPRILLRNTSFKHQVFDIIVSAMKELALTSQLSSLHVTFPSENEWHKLTEKGFLPRIGMQYHWKNRNYKNFDDFLMDMKQSKRKNIRQERKKISAQNLIMKRLRGYEIKARHWDSFYSFYRNTTDNKWGTPHLTREFFHELGAKMGDNVLLVVAEEGDELVAGALNLIGGDTLFGRLWGCQPRSYYPSLHFEACYYQAIEAAIELNLKTVEAGAQGEHKIQRGYLPVTTYSCHYLIDEEFREAIQDFLIREAAQNVSDFSIRANHLGTV*

>Glyma07g40290.3   sequence type=predicted peptide   gene model=Glyma07g40290   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
IVFVGRESEWMWCSGEVGMAAVSVSVTVRVRWCTRKPPTPTPTRFSVNALFGDWGFGNRTRNSLQQQFTFTLADSKVISVSVVSSISDVASSEWDACALDATGPDNFNPFLSHAFLSTLEHSASAVRETGWIPHHIVAKANNNSNNNVVAVVPLYLKTHSYGEFVFDHSWANAYHSYGYNYYPKLQSCVPFTPVTGPRILLRNTSFKHQVFDIIVSAMKELALTSQLSSLHVTFPSENEWHKLTEKGFLPRIGMQYHWKNRNYKNFDDFLMDMKQSKRKNIRQERKKISAQNLIMKRLRGYEIKARHWDSFYSFYRNTTDNKWGTPHLTREFFHELGAKMGDNVLLVVAEEGDELVAGALNLIGGDTLFGRLWGCQPRSYYPSLHFEACYYQAIEAAIELNLKTVEAGAQGEHKIQRGYLPVTTYSCHYLIDEEFREAIQDFLIREAAQV*

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