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SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT2G02560 | AT | Annotation by Michelle Graham. TAIR10: cullin-associated and neddylation dissociated | chr2:690345-697342 FORWARD LENGTH=1217 | SoyBase | E_val: 0 | ISS |
| GO:0003002 | GO-bp | Annotation by Michelle Graham. GO Biological Process: regionalization | SoyBase | N/A | ISS |
| GO:0007155 | GO-bp | Annotation by Michelle Graham. GO Biological Process: cell adhesion | SoyBase | N/A | ISS |
| GO:0009640 | GO-bp | Annotation by Michelle Graham. GO Biological Process: photomorphogenesis | SoyBase | N/A | ISS |
| GO:0009733 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to auxin stimulus | SoyBase | N/A | ISS |
| GO:0009790 | GO-bp | Annotation by Michelle Graham. GO Biological Process: embryo development | SoyBase | N/A | ISS |
| GO:0009793 | GO-bp | Annotation by Michelle Graham. GO Biological Process: embryo development ending in seed dormancy | SoyBase | N/A | ISS |
| GO:0009845 | GO-bp | Annotation by Michelle Graham. GO Biological Process: seed germination | SoyBase | N/A | ISS |
| GO:0009909 | GO-bp | Annotation by Michelle Graham. GO Biological Process: regulation of flower development | SoyBase | N/A | ISS |
| GO:0009933 | GO-bp | Annotation by Michelle Graham. GO Biological Process: meristem structural organization | SoyBase | N/A | ISS |
| GO:0010051 | GO-bp | Annotation by Michelle Graham. GO Biological Process: xylem and phloem pattern formation | SoyBase | N/A | ISS |
| GO:0010090 | GO-bp | Annotation by Michelle Graham. GO Biological Process: trichome morphogenesis | SoyBase | N/A | ISS |
| GO:0010162 | GO-bp | Annotation by Michelle Graham. GO Biological Process: seed dormancy process | SoyBase | N/A | ISS |
| GO:0010182 | GO-bp | Annotation by Michelle Graham. GO Biological Process: sugar mediated signaling pathway | SoyBase | N/A | ISS |
| GO:0010228 | GO-bp | Annotation by Michelle Graham. GO Biological Process: vegetative to reproductive phase transition of meristem | SoyBase | N/A | ISS |
| GO:0016567 | GO-bp | Annotation by Michelle Graham. GO Biological Process: protein ubiquitination | SoyBase | N/A | ISS |
| GO:0019915 | GO-bp | Annotation by Michelle Graham. GO Biological Process: lipid storage | SoyBase | N/A | ISS |
| GO:0022402 | GO-bp | Annotation by Michelle Graham. GO Biological Process: cell cycle process | SoyBase | N/A | ISS |
| GO:0033043 | GO-bp | Annotation by Michelle Graham. GO Biological Process: regulation of organelle organization | SoyBase | N/A | ISS |
| GO:0045010 | GO-bp | Annotation by Michelle Graham. GO Biological Process: actin nucleation | SoyBase | N/A | ISS |
| GO:0048316 | GO-bp | Annotation by Michelle Graham. GO Biological Process: seed development | SoyBase | N/A | ISS |
| GO:0048449 | GO-bp | Annotation by Michelle Graham. GO Biological Process: floral organ formation | SoyBase | N/A | ISS |
| GO:0048765 | GO-bp | Annotation by Michelle Graham. GO Biological Process: root hair cell differentiation | SoyBase | N/A | ISS |
| GO:0050826 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to freezing | SoyBase | N/A | ISS |
| GO:0071555 | GO-bp | Annotation by Michelle Graham. GO Biological Process: cell wall organization | SoyBase | N/A | ISS |
| GO:0005618 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: cell wall | SoyBase | N/A | ISS |
| GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
| GO:0005829 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: cytosol | SoyBase | N/A | ISS |
| GO:0005886 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane | SoyBase | N/A | ISS |
| GO:0005515 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: protein binding | SoyBase | N/A | ISS |
| KOG1824 | KOG | TATA-binding protein-interacting protein | JGI | ISS | |
| PTHR12696 | Panther | TIP120 | JGI | ISS | |
| PF02985 | PFAM | HEAT repeat | JGI | ISS | |
| PF08623 | PFAM | TATA-binding protein interacting (TIP20) | JGI | ISS | |
| UniRef100_B9SPA7 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Tip120, putative n=1 Tax=Ricinus communis RepID=B9SPA7_RICCO | SoyBase | E_val: 0 | ISS |
| UniRef100_UPI0002339210 | UniRef | Annotation by Michelle Graham. Best UniRef hit: UPI0002339210 related cluster n=1 Tax=unknown RepID=UPI0002339210 | SoyBase | E_val: 0 | ISS |
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Glyma07g40231 not represented in the dataset |
Glyma07g40231 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma17g00570 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.07g272400 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma07g40231.1 sequence type=CDS gene model=Glyma07g40231 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGCCAATCTAGCTTTGACTAGCATACTAGAAAAGATGACTGGGAAGGACAAAGATTACAGATATATGGCCACATCTGATTTGCTCAATGAGTTGAGCAAAGCAACGTTTAAGGCCGATGCTGATCTGGAGGTCAAATTGACAAACATCATCATACAACAACTTGATGATGCAGCTGGTGATGTTTCTGGACTTGCTGTCAAATGTCTTGCTCCGTTAGTGAGGAAGGTGAGTGAGGTAAGGGTTGTGGAAATGACCAGTAAACTATGTGACAAATTGCTAAATGGGAAGGATCAGCATCGCGACATTGCTAGCATAGCTTTGAAGACAGTTGTTGCAGAAGTTTCTACTCAGTCTCTTGCACAATCTATTCTCCAGACTCTCACGCCGCAATTGATAAGAGGAATTACTGGTCCTGGAATGGGTTCCGAGATTAAATGTGAATCTCTGGATATTTTATGTGATGTCCTTCATAAATTTGGGAATCTAATGGCAGCGGATCATGAACTATTATTAAGTTCCTTGCTTTCTCAGTTGAGTTCTAATCAAGCTAGTGTGCGCAAGAAGACTGTGGCATGCATTGCATCTCTCTCTTCAAGCCTGTCAGATGATTTGTTGGCAAAGGCAACTGTTGAAGTTGTTACTAACTTGAAAAATAAAGTTGCCAAGTCCGAAATGATCCGTACAAATATACAGATGATCGGTGCTTTGAGTCGAGCTGTTGGCTACCGATTTGGGCCCCATCTTGGAGACACTGTTCCAGTGCTAATTAATTATTGTACTAATGCCTCAGAAAATGATGAAGAGCTTCGTGAGTACAGCTTGCAGGCACTGGAAAGCTTTCTCCTTAGGTGTCCAAGGGATATTTCTGTTTACTGTGATGAAATTCTTCATTTGACACTAGAATATCTAAGTTATGATCCAAATTTCACTGACAACATGGAGGAGGATACTGATGACGAAGGTCTTGAAGAGGAGGAGGATGATGAGAGTGCAAATGAATATACAGATGATGAAGATGTAAGCTGGAAAGTTCGGAGAGCAGCAGCTAAATGTTTAGCAGCATTGATTGTTTCTCGTCCTGAGATCTTGTCAAAGCTGTATGATGAGGCTTGTCCAAAACTAATAGACAGATTCAAAGAGAGGGAAGAAAATGTCAAGATGGATGTATTTAATACTTTCATTGAGCTCTTGCGTCAAACTGGAAATGTCACAAAAGGGCAGACAGATGCAGATATGAGTCCTCGATGGTTGTTGAAGCAAGAAGTGTCGAAGATTGTCAAATCTATAAATAGGCAGTTGCGTGAGAAATCTATCAAGACAAAGGTTGGAGCCTTTTCTGTTTTGAAAGAACTTGTGGTTGTATTGCCCAACTGTCTTGCAGACCATATTGGGTCACTCATTCCAGGAATTGAAAAAGCATTAAATGACAAATCATCTACCTCAAATTTGAAGATTGAAGCCCTAACATTTACAAGATTGGTATTATCTTCACATTCTCCTGATGTTTTTCACCCTTACATCAAGGCTCTTTCTGCCCCTGTTCTGTCAGCTGTTGGTGAGCGTTATTACAAGGTCACTGCAGAGGCCTTGAGAGTATGTGGAGAACTTGTCCGTGTTGTGCGGCCAAACATTGAGGGGTCTGGTTTTGATTTCAGACCATATGTTCATCCCATATATAACGGCATTATGTCACGCTTAATAAACCAAGATCAGGATCAGGAGGTTAAGGAGTGTGCTATCTCCTGCATGGGCCTCATTGTGTCAACATTTGGCGATCATCTTAATGCAGAATTACCTGCATGCCTTCCTGTGCTTGTTGATCGAATGGGAAATGAGATAACCCGACTTACTGCTGTCAAGGCATTTGCTGTCATTGCTGCTTCTCCACTTCGGGTGGATCTATCATGTGTTCTAGAGCATGTGGTAGCAGAGTTGACTGCATTCCTTCGAAAAGCTAATCGTGCTCTAAGGCAGGCTACCTTGGGAACCTTAAATTCACTTATAGTTGCTTATGGTGATAAGATTGTTTTGTCTGCTTATGAAGTTATTATCGTAGAACTGTCGGGACTAATTAGTGATTCTGACTTGCATATGACAGCTCTTGCCCTGGAACTCTGCTGCACATTAATGGGTGACAAGAGGTCAAATCAAAGTATTGGTTTGGCCGTTAGAAACAAAGTTCTTCCTCAAGCTTTAACATTAATTAAAAGCTCATTGTTGCAGGGGCAAGCACTTTCGGCTTTGCAAAACTTTTTTGCTGCTTTAGTCTATTCTGCAAATACTAGTTTTGATTCTCTGCTGGAGTCACTACTTGCCTGTGCTAAGCCTTCTCCACAGTCTGGTGGCATTGCTAAACAAGCTCTGCATTCGATAGCTCAGTGTGTTGCTGTTCTATGCCTTGCTGCTGGTGATCAGAAGTGTTCATCTACAGTGAAAATGCTCACTGACATTCTCAAGGATGACAGCAGTTCTAACTCCGCTAAGCAGCACCTTGCACTTTTATGTTTGGGGGAGATTGGTAGAAGGAAGGATCTAAGTACACATGCACACATAGAAAATATTGTTATTGAATCTTTCCAGTCCCCTTTTGAAGAGATAAAGTCTGCTGCCTCATATGCTCTTGGTAACATTGCTGTTGGTAATCTTCCAAAATACTTGCCATTTATCTTGGATCAGATTGATAATCAGCAGAAGAAACAATATCTCTTGCTTCATTCTTTGAAAGAGGTAATTGTGAGACAATCTGTAGATAAAGCAGAGTTTCAAGAGTCCAGTGTGGAGAAAATACTTAATTTACTCTTCAACCACTGTGAAAGTGAGGAAGAGGGAGTGCGCAATGTAGTGGCGGAGTGTTTGGGCAAAATTGCTCTTATTGAGCCTGTTAAACTCATCCCTGCACTCAAGGTAAGAAGAACCAGCCCAGCTGCATTTACTCGAGCTACTGTTGTCATTGCTGTGAAGTACTCCATAGTTGAGCGTCCAGAGAAGATAGATGAGATCATATACCCTGAAATATCTTCATTTCTGATGCTTATCAAGGATAACGATAGGCATGTTAGGCGAGCTGCTGTTTTGGCTATAAGCACATTTGCACACAATAAGCCGAATCTCATCAAGGGGCTTCTTCCTGATCTGCTGCCTCTTCTATATGATCAAACTATTGTTAAGCAAGAGCTCATAAGGACAGTTGATCTTGGTCCTTTTAAGCATATTGTGGATGATGGACTTGAATTGAGGAAGGCGGCTTTTGAATGTGTAGACACATTGCTGGATAGTTGCCTTGATCAAGTGAACCCGTCATCATTCATTGTTCCTTATCTTAAATCTGGTTTGGATGATCATTATGATGTTAAAATGCCATGCCACCTGATACTCTCCAAACTAGCTGACAAGTGTCCTTCTGCAGTCTTGGCAGTGTTAGATTCATTGGTTGATCCTCTCCAGAAGACTATTAATTTTAAGCCAAAGCAAGACGCTGTCAAGCAAGAAGTAGATCGCAATGAAGACATGATTCGAAGTGCACTCCGAGCTATTGCATCCTTGAACCGCATAAGTGGAGGAGATTGCAGTGTCAAGTTCAAGAATCTTATGAACGAAATATCAAAATCACAAACTCTCTGGGATAAATATTATTCAATCCGCAATGAATGA
>Glyma07g40231.1 sequence type=predicted peptide gene model=Glyma07g40231 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MANLALTSILEKMTGKDKDYRYMATSDLLNELSKATFKADADLEVKLTNIIIQQLDDAAGDVSGLAVKCLAPLVRKVSEVRVVEMTSKLCDKLLNGKDQHRDIASIALKTVVAEVSTQSLAQSILQTLTPQLIRGITGPGMGSEIKCESLDILCDVLHKFGNLMAADHELLLSSLLSQLSSNQASVRKKTVACIASLSSSLSDDLLAKATVEVVTNLKNKVAKSEMIRTNIQMIGALSRAVGYRFGPHLGDTVPVLINYCTNASENDEELREYSLQALESFLLRCPRDISVYCDEILHLTLEYLSYDPNFTDNMEEDTDDEGLEEEEDDESANEYTDDEDVSWKVRRAAAKCLAALIVSRPEILSKLYDEACPKLIDRFKEREENVKMDVFNTFIELLRQTGNVTKGQTDADMSPRWLLKQEVSKIVKSINRQLREKSIKTKVGAFSVLKELVVVLPNCLADHIGSLIPGIEKALNDKSSTSNLKIEALTFTRLVLSSHSPDVFHPYIKALSAPVLSAVGERYYKVTAEALRVCGELVRVVRPNIEGSGFDFRPYVHPIYNGIMSRLINQDQDQEVKECAISCMGLIVSTFGDHLNAELPACLPVLVDRMGNEITRLTAVKAFAVIAASPLRVDLSCVLEHVVAELTAFLRKANRALRQATLGTLNSLIVAYGDKIVLSAYEVIIVELSGLISDSDLHMTALALELCCTLMGDKRSNQSIGLAVRNKVLPQALTLIKSSLLQGQALSALQNFFAALVYSANTSFDSLLESLLACAKPSPQSGGIAKQALHSIAQCVAVLCLAAGDQKCSSTVKMLTDILKDDSSSNSAKQHLALLCLGEIGRRKDLSTHAHIENIVIESFQSPFEEIKSAASYALGNIAVGNLPKYLPFILDQIDNQQKKQYLLLHSLKEVIVRQSVDKAEFQESSVEKILNLLFNHCESEEEGVRNVVAECLGKIALIEPVKLIPALKVRRTSPAAFTRATVVIAVKYSIVERPEKIDEIIYPEISSFLMLIKDNDRHVRRAAVLAISTFAHNKPNLIKGLLPDLLPLLYDQTIVKQELIRTVDLGPFKHIVDDGLELRKAAFECVDTLLDSCLDQVNPSSFIVPYLKSGLDDHYDVKMPCHLILSKLADKCPSAVLAVLDSLVDPLQKTINFKPKQDAVKQEVDRNEDMIRSALRAIASLNRISGGDCSVKFKNLMNEISKSQTLWDKYYSIRNE*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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