Report for Sequence Feature Glyma07g40180
Feature Type: gene_model
Chromosome: Gm07
Start: 44451756
stop: 44459191
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma07g40180
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT2G02480 AT
Annotation by Michelle Graham. TAIR10: AAA-type ATPase family protein | chr2:661093-665337 FORWARD LENGTH=1218
SoyBase E_val: 0 ISS
GO:0003002 GO-bp
Annotation by Michelle Graham. GO Biological Process: regionalization
SoyBase N/A ISS
GO:0006260 GO-bp
Annotation by Michelle Graham. GO Biological Process: DNA replication
SoyBase N/A ISS
GO:0007155 GO-bp
Annotation by Michelle Graham. GO Biological Process: cell adhesion
SoyBase N/A ISS
GO:0009887 GO-bp
Annotation by Michelle Graham. GO Biological Process: organ morphogenesis
SoyBase N/A ISS
GO:0009888 GO-bp
Annotation by Michelle Graham. GO Biological Process: tissue development
SoyBase N/A ISS
GO:0010014 GO-bp
Annotation by Michelle Graham. GO Biological Process: meristem initiation
SoyBase N/A ISS
GO:0010026 GO-bp
Annotation by Michelle Graham. GO Biological Process: trichome differentiation
SoyBase N/A ISS
GO:0010090 GO-bp
Annotation by Michelle Graham. GO Biological Process: trichome morphogenesis
SoyBase N/A ISS
GO:0010091 GO-bp
Annotation by Michelle Graham. GO Biological Process: trichome branching
SoyBase N/A ISS
GO:0010228 GO-bp
Annotation by Michelle Graham. GO Biological Process: vegetative to reproductive phase transition of meristem
SoyBase N/A ISS
GO:0010638 GO-bp
Annotation by Michelle Graham. GO Biological Process: positive regulation of organelle organization
SoyBase N/A ISS
GO:0016049 GO-bp
Annotation by Michelle Graham. GO Biological Process: cell growth
SoyBase N/A ISS
GO:0016926 GO-bp
Annotation by Michelle Graham. GO Biological Process: protein desumoylation
SoyBase N/A ISS
GO:0022402 GO-bp
Annotation by Michelle Graham. GO Biological Process: cell cycle process
SoyBase N/A ISS
GO:0033043 GO-bp
Annotation by Michelle Graham. GO Biological Process: regulation of organelle organization
SoyBase N/A ISS
GO:0033044 GO-bp
Annotation by Michelle Graham. GO Biological Process: regulation of chromosome organization
SoyBase N/A ISS
GO:0045010 GO-bp
Annotation by Michelle Graham. GO Biological Process: actin nucleation
SoyBase N/A ISS
GO:0045595 GO-bp
Annotation by Michelle Graham. GO Biological Process: regulation of cell differentiation
SoyBase N/A ISS
GO:0048449 GO-bp
Annotation by Michelle Graham. GO Biological Process: floral organ formation
SoyBase N/A ISS
GO:0048589 GO-bp
Annotation by Michelle Graham. GO Biological Process: developmental growth
SoyBase N/A ISS
GO:0048765 GO-bp
Annotation by Michelle Graham. GO Biological Process: root hair cell differentiation
SoyBase N/A ISS
GO:0050665 GO-bp
Annotation by Michelle Graham. GO Biological Process: hydrogen peroxide biosynthetic process
SoyBase N/A ISS
GO:0071555 GO-bp
Annotation by Michelle Graham. GO Biological Process: cell wall organization
SoyBase N/A ISS
GO:0005634 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: nucleus
SoyBase N/A ISS
GO:0005886 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane
SoyBase N/A ISS
GO:0009360 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: DNA polymerase III complex
SoyBase N/A ISS
GO:0003677 GO-mf
Annotation by Michelle Graham. GO Molecular Function: DNA binding
SoyBase N/A ISS
GO:0003887 GO-mf
Annotation by Michelle Graham. GO Molecular Function: DNA-directed DNA polymerase activity
SoyBase N/A ISS
GO:0005524 GO-mf
Annotation by Michelle Graham. GO Molecular Function: ATP binding
SoyBase N/A ISS
KOG0989
KOG
Replication factor C, subunit RFC4
JGI ISS
PTHR11669 Panther
REPLICATION FACTOR C / DNA POLYMERASE III GAMMA-TAU SUBUNIT
JGI ISS
PF00004 PFAM
ATPase family associated with various cellular activities (AAA)
JGI ISS
PF12169 PFAM
DNA polymerase III subunits gamma and tau domain III
JGI ISS
UniRef100_B9S048 UniRef
Annotation by Michelle Graham. Most informative UniRef hit: Replication factor C / DNA polymerase III gamma-tau subunit, putative n=1 Tax=Ricinus communis RepID=B9S048_RICCO
SoyBase E_val: 0 ISS
UniRef100_UPI00023391DE UniRef
Annotation by Michelle Graham. Best UniRef hit: UPI00023391DE related cluster n=1 Tax=unknown RepID=UPI00023391DE
SoyBase E_val: 0 ISS
Expression Patterns of Glyma07g40180
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE
Paralogs of Glyma07g40180
Paralog Evidence Comments
Glyma17g00620 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.
Gene model name correspondences to Glyma07g40180 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
Glyma.07g271700 Wm82.a2.v1 IGC As supplied by JGI
References for Glyma07g40180
Coding sequences of Glyma07g40180
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma07g40180.1 sequence type=CDS gene model=Glyma07g40180 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGTCAGAAATGCGGGTATCTGAGCTTCACTTGAAGAAGGAACTCACCCAAATCCGCAAGGCTGCTCGAGTGCTCAGAGATCCTGGCACCACTTCTTCTTGGAAGTCACCTCTCAGTTCATCAAGATCTGTGGCTGCATGGAACAACGACACTGCCAGTAGAAGGCTCACTACTATTTCACAACTGGGTCCCAACAACACCAATGACAAGGACAAGAGGGTGTTCTTGTACAACTGGAAGAACTACAAATCTTCCAGTGAGAAATACAACGATGAGGAGGAAGAAGAAGAAGATGATGATGGATCTTCTTCGCTTCTCGGGGACAGAGACAGAGATAGTTTGAGTGATGCTCGCAATGGTTGTGACTCAAAGAGTGATACTTACTTGGCTGCTGCCGTTGGTGGTGGTGGTGGCGGTGGCACTCGCTCTTCCATTTTCCGATGTGGGGATGCCAATCTTGTTTCCAGAAGAACGGTTCCCGTTAAGAAAAAGAGTAAGAAAAATAACCCACATTTTGATTTTTTAGCAAAATATCAACACCATAGACCAGGAAAAAAATTTGTGAGTTCTTCCAAGGCATTGCTAGAAGGGCATCCTTCGCCTTTTTTTAACAGGGATGACTCGGTTGAACACTCTGATGATGATACCGAGGATTACACTAATTCCGAGGGTGTGAGACCAATTTCGGGGACTTCCCCTTTGCTTCTCAAACTCAGGCAAAAGAACTGGTCTCGCTCTTCCTCTAAGTTTTTGAGAAGAAGCAGGAAAGAGGACTCTTCTTATTCTTATAGCACCCCTGCATTGTCAACTAGTTCTTACAATAGGTACGGTCACCGCTATCCCAGCACTCTTGGATCCTGGGATGGAACCACCACATCGGTCAATGATGGCGACGGCGATGATGAGATTGATGATCATTTGGATTTGCCAGGCCGTCAAGGATGTGGAATTCCTTGCTACTGGTCCAAGAGGACTCCTAAACATAGAGGCATGTGTGGGAGTTGTTATTCTCCTTCACTGTCGGATACTTTGAGGAGGAAAGGGAGTAGCATGCTCTGTGGAAGTCAAACTATTTATCCAAGGCACCGGAGATCAGCTTCGGCTTCTCACAAGCGAAGACTCTCTTTGAGGAGTGCTAGAGGTGTTATTCCATTGCTCACTAATAGTGGTGATGTTAGAGAAGGGTCATCTGTTGGAACCGGTAGGAGTGATGACGAGCTTTCCACAAACTTTGGGGAGCTTGATCTTGAGGGATTGAGCCGGTTGGATGGAAGAAGGTGGTCATCGAGTTGTAGGAGTCAAGAGGGATTGGAGATTGTAGCTCTCAATGGGGAAGGGGAATATGATGGCACGCCAGAAAATAATCGGAGCTTCAGCCAGAAGTATAGGCCCATGTTCTTTGGTGAACTGATCGGGCAGAATGTTGTGGTTCAGTCACTTATCAGTGCTGTTTCAAGGGGACGAATTGCTCCCGTCTATCTGTTTCAAGGTCCCCGTGGGACTGGCAAAACATCAACAGCTAGGATATTTGCTGCTGCTTTGAATTGTGCGAGTCCTAATGAGAGCAAACCTTGTGGCTACTGCAGAGAATGTGTTGATTTCATTTCTGGTAAGAGCAGTGATCTATTGGAAGTTGATGGAACCAATAAGAGAGGAATTGATAAGGCTAGATATCTACTAAAACGATTGTCAACTGGATCATCATCAGCCTCCCCACAATATACAATTTTTGTTATTGATGAGTGTCACCTGTTGCCCTCCAAGACATGGCTGGGATTTCTTAAGTTTCTGGAAGAACCACCGCAGCGAGTTGTATTCATTTTTATAACATCTGATCTTGACAATGTGCCACGAACAATACAATCTCGATGCCAGAAGTACCTTTTTAATAAAATTAAAGATGGGGATATTGTGACCAGGTTGAGGAAAATATCTACTCAGGAGAACCTTGATGTTGAAGCAGATGCACTGGACCTCATTGCTATGAATGCAGATGGTTCACTTCGAGATGCAGAAACAATGTTAGAACAACTTAGTTTGCTGGGGAAGAGAATTACTACTTCTCTTGTCAATGAACTGGTGGGAGTTGTTTCAGATGAAAAATTATTGGAACTTTTGGAGCTAGCAATGTCATCAGATACTGTAGAGACAGTGAAAAGAGCCAGAGAATTGATGGACTCTGGAGTTGATCCAATGGTTTTGATGTCTCAACTAGCCGGTCTTATCATGGACATCATTGCTGGATCATATGCAGTCATTGACACCAAACCTGATGATTCATTTTTTGGTGGACGGAGTTTGAATCAATCAGAGTTGGAGAGGTTAAAGAATGCTTTGAAGCTTCTCTCAGAGGCAGAGAAACAGTTAAGGACATCCAGTGAACGCTCTACATGGTTCACAGCAACTCTATTGCAGCTTGGTTCTACACCTTCTCCTGATCTTACTCAGTCAAGCAGCAGTAGGAGACAGAGCTGCAAGACAACTGAAGATGATCCATCAAGTGTTTCAAGAGACGTTACATCTTGCATGCATAAGTCAGACCCTCAATATGTGCCTCGAAAGTCAGCATACACTGCATCCCAGCAAAAAGCCGTGAATGAGAGTTCCCACCATCAAAAGGATATATCCTCAAAGATTGAAGGCTTGAAATCAAAGCCATCAAACGGCCCAGTCATAGATGATGGCTCCACAGTGGTCTCATCTGATGACCTTATGGTTGAGAATAGAATGTTTAGGTGCATAGATTCAGGGAAGTTATGTGACATCTGGGTGCATTGTATTGAGAGGTGTCACTCGAAGACATTGAGGCAGCTGCTACACAATCATGGAAAGCTTGTGTCTGTATGTGAAGTAGAAGGTGTTTTGGTAGCATATGTTGCTTTTGGAGATGCCGATATTAAAGTTAGGGTTGAGAGGTTTTTGAGAAGCATTACAAACTCTATGGAAATGGTTCTTAGGCGCAATGTGGAGGTAAGAATAATCCATTTGCCAGATGGTGAAGGTGAAAATCAAGTTAATCTATTGGGCCTAAAGCAGGCAGAGTCAACAGTGGCTGGTGAGAAGGAAGAAAGAAAGGGTCATATGAACAGAACGGAGTCTTATTCTAGTTTTCCTCCTTTACTGGATGGAAACCTTCAATCTACCAATGCTTCATCAGATATTTTGGCTGAAGGAAATGGTGTGAAGGAGAGGAGACAGGATAATCCAATGCAAAGAATTGAATCCATCATTCGTGAACAGAGGCTGGAAACTGCCTGGTTACAGGCAGTAGAAAAGGGTTCCCCTGGATCATTGAGTCGGTTGAGACCTGAGGAGAATCAAGTACTGCTACAGAATGCTGTGGACCCAATGGAGTCCATGGATTCTACAAGATTTCCCTCTCACCAGCATTGGGAAGATGAACTGAATAATGAAGTCAAAGTTTTAAGCCTTAAAAATGGAAGGGTCCCACAGAAGGATCAGATTGGTCGAAAGGCAGATCGTTATCCCATGTCACCAAGTTTATTGCATGACAACAGTTTAGCAACAATTTCTGGAAAAGACAATCTGGGATATGAATCAGGGTCAGGAGCTGGGGGTTGTGGATTTTTATGTTGGAATAAGTCCAAGCCTAGAAGGGTAGTAAAGGTCAAAGGTGGCACCCCAGTTAGAGCGCGTAGAGCTGCAACTTTTACGTTGTTTGGTGACTGCACTAAGCCAAAGAAAAGGGAGAGGAGAAGATAA
Predicted protein sequences of Glyma07g40180
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma07g40180.1 sequence type=predicted peptide gene model=Glyma07g40180 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MSEMRVSELHLKKELTQIRKAARVLRDPGTTSSWKSPLSSSRSVAAWNNDTASRRLTTISQLGPNNTNDKDKRVFLYNWKNYKSSSEKYNDEEEEEEDDDGSSSLLGDRDRDSLSDARNGCDSKSDTYLAAAVGGGGGGGTRSSIFRCGDANLVSRRTVPVKKKSKKNNPHFDFLAKYQHHRPGKKFVSSSKALLEGHPSPFFNRDDSVEHSDDDTEDYTNSEGVRPISGTSPLLLKLRQKNWSRSSSKFLRRSRKEDSSYSYSTPALSTSSYNRYGHRYPSTLGSWDGTTTSVNDGDGDDEIDDHLDLPGRQGCGIPCYWSKRTPKHRGMCGSCYSPSLSDTLRRKGSSMLCGSQTIYPRHRRSASASHKRRLSLRSARGVIPLLTNSGDVREGSSVGTGRSDDELSTNFGELDLEGLSRLDGRRWSSSCRSQEGLEIVALNGEGEYDGTPENNRSFSQKYRPMFFGELIGQNVVVQSLISAVSRGRIAPVYLFQGPRGTGKTSTARIFAAALNCASPNESKPCGYCRECVDFISGKSSDLLEVDGTNKRGIDKARYLLKRLSTGSSSASPQYTIFVIDECHLLPSKTWLGFLKFLEEPPQRVVFIFITSDLDNVPRTIQSRCQKYLFNKIKDGDIVTRLRKISTQENLDVEADALDLIAMNADGSLRDAETMLEQLSLLGKRITTSLVNELVGVVSDEKLLELLELAMSSDTVETVKRARELMDSGVDPMVLMSQLAGLIMDIIAGSYAVIDTKPDDSFFGGRSLNQSELERLKNALKLLSEAEKQLRTSSERSTWFTATLLQLGSTPSPDLTQSSSSRRQSCKTTEDDPSSVSRDVTSCMHKSDPQYVPRKSAYTASQQKAVNESSHHQKDISSKIEGLKSKPSNGPVIDDGSTVVSSDDLMVENRMFRCIDSGKLCDIWVHCIERCHSKTLRQLLHNHGKLVSVCEVEGVLVAYVAFGDADIKVRVERFLRSITNSMEMVLRRNVEVRIIHLPDGEGENQVNLLGLKQAESTVAGEKEERKGHMNRTESYSSFPPLLDGNLQSTNASSDILAEGNGVKERRQDNPMQRIESIIREQRLETAWLQAVEKGSPGSLSRLRPEENQVLLQNAVDPMESMDSTRFPSHQHWEDELNNEVKVLSLKNGRVPQKDQIGRKADRYPMSPSLLHDNSLATISGKDNLGYESGSGAGGCGFLCWNKSKPRRVVKVKGGTPVRARRAATFTLFGDCTKPKKRERRR*