Glyma07g40160 - SoyBase

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Report for Sequence Feature Glyma07g40160

Feature Type:	gene_model
Chromosome:	Gm07
Start:	44437118
stop:	44441208
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma07g40160

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G39960	AT	Annotation by Michelle Graham. TAIR10: GTP binding;GTP binding \| chr5:15994195-15996820 FORWARD LENGTH=621	SoyBase	E_val: 0	ISS
GO:0005739	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion	SoyBase	N/A	ISS
GO:0005525	GO-mf	Annotation by Michelle Graham. GO Molecular Function: GTP binding	SoyBase	N/A	ISS
KOG1191	KOG	Mitochondrial GTPase	JGI		ISS
PTHR11649	Panther	MSS1/TRME-RELATED GTP-BINDING PROTEIN	JGI		ISS
PTHR11649:SF5	Panther	GTP-BINDING PROTEIN ERG	JGI		ISS
PF01926	PFAM	GTPase of unknown function	JGI		ISS
UniRef100_B9S055	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: GTP-binding protein enga, putative n=1 Tax=Ricinus communis RepID=B9S055_RICCO	SoyBase	E_val: 0	ISS
UniRef100_UPI00023391DC	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI00023391DC related cluster n=1 Tax=unknown RepID=UPI00023391DC	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma07g40160

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma07g40160

Paralog	Evidence	Comments
Glyma17g00640	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma07g40160 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.07g271300	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma07g40160

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma07g40160

Limit To All Plant Sequences

>Glyma07g40160.1   sequence type=CDS   gene model=Glyma07g40160   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAGCCGAATCCGGAGGCTTGTCTATGTTCATCTCATTCCACCTGTGACTGAGAGGGGATTTTCTAGCCTGAGTGTGGTCACTGCACCTCTTGATTTTACTGAAATTCAAATTAGTCGCCTTCCCACTGTCGTCATTCTAGGGCGACCTAATGTAGGGAAATCTGCATTGTTCAACCGTCTTATTCGGAGGAGGGAGGCTCTGGTATATAACACCCCCGATGACCATGTTACCCGTGACATACGAGAAGGACTTGCCAAGTTGGCCGACTTACGATTCAGGGTCTTGGACTCTGCTGGCTTGGAAGCTGAAGCCACTTCCGCTTCTATCCTCCACAGAACAGCTTCTATCACTGCACACGTCTTAGCAAAGTCACACTTTGCGCTCTTCCTCACTGATGCAAGAGCTGGACTTCATCCACTTGATCTCCAGGTTGGAAAATGGTTACGGAAACATGCACCTCAAATCAAGCCTATTGTTGCCATGAATAAATCCGAATCACTCTTTGATGCCACTGGCTCTCTGGCTTCAGCTGCAAACGAAATGTGCCGCTTGGGATTTGGGGATCCTATTGCCATATCTGCTGAGACTGGACTCGGTATGCATGACTTATATATGTCTCTTAAGCCTCTCCTCGAGGACTATATGCTTCGTGTCTTCACTGAAGAAGGTGCTCGCGAAAATAGCCACAACGAGGTCGAGGACAGCAGCGACCTTGATGTTGACAAAAGTAAGCTGCCATTGCAGTTAGCCATTGTAGGACGCCCTAATGTTGGTAAATCAACTTTATTGAATGCATTGTTGCAAGAAGACCGTGTTCTTGTGGGTCCTGAAGCTGGTCTGACAAGAGATTCAATCAGAACCCAGTTTGAATTTCAAGGAAGAACAATTTATCTGGTTGATACTGCTGGTTGGTTGCAGAGGACGAAGCAGGAGAAAGGAGCAGCATCCTTGAGCATTATGCAATCAAGGAAGAGTCTACTCCGGGCTCATATAATTGCTTTAGTACTAGATGCAGAAGAGATTATAAATGCAAGACGAAGTATGAAACATGCTGAAGTAGTTATAGCCAGACGGGCAGTGGAAGAAGGACGTGGGCTGGTTGTGATTGTGAACAAGATGGACCTTCTAAGAGGCAAACACAAATCGTCATCCTATGAGAAGGTTATGGAAGTTGTTCCACAAGAAATTCAGACAATTATACCTCAGGTAACAGGGATCCCAGTTGTATTCATTTCAGCATTGGAGGGAAGGGGCCGGACCACTGTCTTGAATCAGGTCATCGATACTTATGAAAAATGGTGTTCAAGATTACCTACAGCTCGTCTAAACCGTTGGTTGCAAAAGGTTATGAGCAGGCATTCTTGGAAAGACCAAGCAGCACAGCCTAAGGTTAAGTATTTCACTCAGGTCAAGGCCCGGCCACCTACATTTGTTGCGTTTGTGCGTGGGAAGACTCAGCTTTCTGATACAGACATTAGGTTCTTAACCAAGTCCTTGAAGGAGGACTTCGATTTGGGTGGAATTCCTATACGGATCATGCAACGTTCTGTCACTAAGAAAGATGCCAGTGGAAGTGGAAATAGCAAGAATAGCCATTCGGTATGCAGAGTGGTTGAAAGGACTGTCTCTGACAAGAGAAGTATCGTAGATGAATAA

Predicted protein sequences of Glyma07g40160

Limit To All Plant Sequences

>Glyma07g40160.1   sequence type=predicted peptide   gene model=Glyma07g40160   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSRIRRLVYVHLIPPVTERGFSSLSVVTAPLDFTEIQISRLPTVVILGRPNVGKSALFNRLIRRREALVYNTPDDHVTRDIREGLAKLADLRFRVLDSAGLEAEATSASILHRTASITAHVLAKSHFALFLTDARAGLHPLDLQVGKWLRKHAPQIKPIVAMNKSESLFDATGSLASAANEMCRLGFGDPIAISAETGLGMHDLYMSLKPLLEDYMLRVFTEEGARENSHNEVEDSSDLDVDKSKLPLQLAIVGRPNVGKSTLLNALLQEDRVLVGPEAGLTRDSIRTQFEFQGRTIYLVDTAGWLQRTKQEKGAASLSIMQSRKSLLRAHIIALVLDAEEIINARRSMKHAEVVIARRAVEEGRGLVVIVNKMDLLRGKHKSSSYEKVMEVVPQEIQTIIPQVTGIPVVFISALEGRGRTTVLNQVIDTYEKWCSRLPTARLNRWLQKVMSRHSWKDQAAQPKVKYFTQVKARPPTFVAFVRGKTQLSDTDIRFLTKSLKEDFDLGGIPIRIMQRSVTKKDASGSGNSKNSHSVCRVVERTVSDKRSIVDE*

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