Glyma07g40120 - SoyBase

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Report for Sequence Feature Glyma07g40120

Feature Type:	gene_model
Chromosome:	Gm07
Start:	44396339
stop:	44398694
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma07g40120

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G49800	AT	Annotation by Michelle Graham. TAIR10: Polyketide cyclase/dehydrase and lipid transport superfamily protein \| chr5:20234771-20236135 REVERSE LENGTH=242	SoyBase	E_val: 5.00E-125	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0005739	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion	SoyBase	N/A	ISS
GO:0003674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: molecular function	SoyBase	N/A	ISS
KOG2761	KOG	START domain-containing proteins involved in steroidogenesis/phosphatidylcholine transfer	JGI		ISS
PF01852	PFAM	START domain	JGI		ISS
UniRef100_I1KNP8	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Glycine max RepID=I1KNP8_SOYBN	SoyBase	E_val: 1.00E-173	ISS
UniRef100_Q53NA1	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Expressed protein n=2 Tax=Oryza sativa RepID=Q53NA1_ORYSJ	SoyBase	E_val: 1.00E-94	ISS

Expression Patterns of Glyma07g40120

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma07g40120

Paralog	Evidence	Comments
Glyma17g00670	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma07g40120 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.07g270900	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma07g40120

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma07g40120

Limit To All Plant Sequences

>Glyma07g40120.1   sequence type=CDS   gene model=Glyma07g40120   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAGCAGCAGTCCTGCACCTTGCAGCCGATCCTGGTCAATAAGTGAGGACTCCCTAAGAAGGTATGTGCAGTTTGCGAGTGAAAGCTGCGTACAAGAGTTATTGGCAGCTTCGGACACAAACAAAGGAAATGGCAATGATGGATGGAAGATGCTCACTCTTGACAATGGAGTGGAGATATCAAAACGCAGGTCAGGCTCACTCCACACGTTTCGCAGCCGTTGGGTTCTTAGAGCTGTCTCTCCCCAACAGTTCATAACAGTGGCCAATGCCATTGATGCTGCAAAGCAATGGGACTCTGATCTGGTGGAAGCCAGGTACATAAAAGATCTTCAAGACAACCTCAGCATAATTCGTCTTAGGTTTGGTGATAACTCCAAGCCTCTCTTCAGGAATAGAGAATTCATTGTCTATGAGCGGCGTGAGACTATGGAAGATGGCACCTTGGTGGTAGCAGTTGCTTCACTGCCAAAGGAAATAGCTGCAGGGTTACATCCGGAGCAAAGTAATGCAATCAGAGGACTGTTGCTACAGTCAGGGTGGGTGGTAGAGAAGCTTGAAGATGATTCATGTGTGGTCACTTATGTTGTTCAGTTGGATCCTGCAGGATGGCTGCCCAAGTGCTTTGTCAATCGATTTAACACAAAACTGGTTATGATCATTGAAAACCTTAAAAAATTAGCCCAAGCATGTCCTAGTGAAGGTGAAATTTGA

Predicted protein sequences of Glyma07g40120

Limit To All Plant Sequences

>Glyma07g40120.1   sequence type=predicted peptide   gene model=Glyma07g40120   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSSSPAPCSRSWSISEDSLRRYVQFASESCVQELLAASDTNKGNGNDGWKMLTLDNGVEISKRRSGSLHTFRSRWVLRAVSPQQFITVANAIDAAKQWDSDLVEARYIKDLQDNLSIIRLRFGDNSKPLFRNREFIVYERRETMEDGTLVVAVASLPKEIAAGLHPEQSNAIRGLLLQSGWVVEKLEDDSCVVTYVVQLDPAGWLPKCFVNRFNTKLVMIIENLKKLAQACPSEGEI*

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