Glyma07g40110 - SoyBase

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Report for Sequence Feature Glyma07g40110

Feature Type:	gene_model
Chromosome:	Gm07
Start:	44387969
stop:	44395171
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma07g40110

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G49760	AT	Annotation by Michelle Graham. TAIR10: Leucine-rich repeat protein kinase family protein \| chr5:20216679-20221052 FORWARD LENGTH=953	SoyBase	E_val: 0	ISS
GO:0006468	GO-bp	Annotation by Michelle Graham. GO Biological Process: protein phosphorylation	SoyBase	N/A	ISS
GO:0006569	GO-bp	Annotation by Michelle Graham. GO Biological Process: tryptophan catabolic process	SoyBase	N/A	ISS
GO:0009684	GO-bp	Annotation by Michelle Graham. GO Biological Process: indoleacetic acid biosynthetic process	SoyBase	N/A	ISS
GO:0030003	GO-bp	Annotation by Michelle Graham. GO Biological Process: cellular cation homeostasis	SoyBase	N/A	ISS
GO:0044242	GO-bp	Annotation by Michelle Graham. GO Biological Process: cellular lipid catabolic process	SoyBase	N/A	ISS
GO:0070838	GO-bp	Annotation by Michelle Graham. GO Biological Process: divalent metal ion transport	SoyBase	N/A	ISS
GO:0005576	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: extracellular region	SoyBase	N/A	ISS
GO:0005773	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: vacuole	SoyBase	N/A	ISS
GO:0005886	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane	SoyBase	N/A	ISS
GO:0004672	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein kinase activity	SoyBase	N/A	ISS
GO:0004674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein serine/threonine kinase activity	SoyBase	N/A	ISS
GO:0005524	GO-mf	Annotation by Michelle Graham. GO Molecular Function: ATP binding	SoyBase	N/A	ISS
GO:0016301	GO-mf	Annotation by Michelle Graham. GO Molecular Function: kinase activity	SoyBase	N/A	ISS
GO:0016772	GO-mf	Annotation by Michelle Graham. GO Molecular Function: transferase activity, transferring phosphorus-containing groups	SoyBase	N/A	ISS
KOG1187	KOG	Serine/threonine protein kinase	JGI		ISS
PTHR24420	Panther	FAMILY NOT NAMED	JGI		ISS
PTHR24420:SF476	Panther	SUBFAMILY NOT NAMED	JGI		ISS
PF00560	PFAM	Leucine Rich Repeat	JGI		ISS
PF07714	PFAM	Protein tyrosine kinase	JGI		ISS
UniRef100_B9S062	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Serine/threonine-protein kinase PBS1, putative n=1 Tax=Ricinus communis RepID=B9S062_RICCO	SoyBase	E_val: 0	ISS
UniRef100_UPI00023391D9	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI00023391D9 related cluster n=1 Tax=unknown RepID=UPI00023391D9	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma07g40110

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma07g40110

Paralog	Evidence	Comments
Glyma17g00680	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma07g40110 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.07g270800	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma07g40110

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma07g40110

Limit To All Plant Sequences

>Glyma07g40110.2   sequence type=CDS   gene model=Glyma07g40110   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAGCCAAAGAGTATTAGTAGTCCTGCTGCTTGTTTTGAATTATGTGTTGGTTGCAGAAGGAGAAACAGCTGATGGAGATTTGACCACATTTTTGTCTCTTATAAATACCTGGGAGAACACCCCTCCTAATTGGGTGGGTTCAGATCCTTGTGATGATTGGGTTGGAATCAAGTGCAAGAATTCACACATTACATCAATAACATTATCAAGCACCGGTTTGGCTGGTCAGCTTTCTGGAGATATTGGATCACTATCTGAATTAGAGACTTTGGATCTATCTTACAACAAGGACTTGACTGGACCACTTCCAGAATCCATTGGGGAATTGAAGAAGCTGGCAACCTTAATTCTTGTTGGTTGTAGCTTCAAGGGTCCTATTCCAGACAGCATAGGAAATATGCAGGAGCTCCTCTTCTTATCATTAAATTCCAATAGCTTTAGTGGACCAATTCCTCATTCTATTGGTAATCTATCAAAGCTTTATTGGTTAGATTTAGCTGACAATCAACTTCAAGGGAACATCCCGGTATCTAGTGGCGACATATCTGGTCTTGATAAGTTACACCATGCCAAGCATTTTCATCTTGGGAAGAATAATCTCTCAGGCAGTATTCCTCCTCAACTTTTTAGCTCGGAAATGGCTCTGATTCATGTGCTTTTGGAAAGCAATCAACTCACTGACAAGATTCCACCTACCCTTGGACTAGTTCAGAGTCTGGAGGTGGTGCGCTTAGATGGTAATTCATTAAATGGACCTGTGCCTCCAAACATCAACAATCTTACTCATGTTCAAGATCTGTACTTGTCCAACAATAAACTGTCAGGCTCCCTGCCAAACCTTACTGGAATGAATGCCCTCAGCTATCTGGACATGAGCAACAATAGTTTTAAGCCATTGGATTTTCCAGGATGGTTTTCAACTCTTAAGTCCTTAACAACATTAAAGATGGAGAGAACACAACTTCAAGGACAGGTTCCTACTTCTTTGTTTACACTTATCAATTTACAGATTGTGGTTCTAAAAGACAACAAAATAAATGGTACCTTGGATATCGGCTCCTCCTACAGCAATCAGCTGCGACTTGTTGATTTTGAGACTAATTCAATTGACAGCTTTGAGCAAAAAGACGAAGTTCCAAATGTGAAAATCAAGATAATACTTAAAGATAACCCAATTTGTCAAGAAAATGGAGAACTAGAAAGCTACTGCTCCTCTTCTCAACCCAATGTCTCATATTCAACACCACTAAATAACTGTCAACCTGGTACCTGCAGTTCAGAACAGATTCTTAGTCCCAACTGTATATGCGCATATCCATATTCAGGAACCTTAACTTTCAGGTCACCTCCCTTTTTGGACTTTGATAACAAAACTTACTACTCAATGCTTGAGGAGGGTCTTATGAACTCTTTTAAGTCTCATTTTCTACCTGTGGATTCGGTTTTGTTGAGCCATCCAAGTAAGGATTCAACTCAGTATCTCGAATTGAGCTTACAAGTCTTCCCATCAGGACAGAATCATTTCAATCGAACAGGGGCTTTTAGCATTGGTTTTCTGCTTAGCAACCAGACTTTTAAGCCTCCTAAAGTTTTTGGACCATTTTATTTTGTTGGAGATAAATATGAACACTTTGAAAACTCTGAAGGATTGACTGAATCGAGTAAATCTTCAAACATTGGAATCATAATTGGGGCAGCAGTGGGTGGTTTGGTCCTGCTAGTGTTACTACTACTAGCAGGTCTTTATGCTTTCCGCCAAAAGAAAAGGGCCGAAAAAGCAATTGGACAAAGCAATCCCTTTAGACGCTGGGATACAGCTTCGAGCAAGAGTGAGGTCCCTCAGTTGACAGAAGCAAGGATGTTTTCTTTTGAAGAGCTTAAAAAATACACCAAAAATTTTTCTCAAGTCAATGGCATTGGATCTGGGGGTTTTGGGAAGGTTTATAAGGGAAACCTTCCCAATGGACAAGTGATAGCAATAAAACGAGCTCAAAAAGAATCTATGCAGGGAAAGCTTGAGTTTAAAGCGGAAATTGAGCTCCTATCAAGGGTCCACCATAAGAATCTTGTCAGCCTTGTGGGATTCTGCTTTGAGCACGAAGAACAAATGCTGGTTTATGAGTATGTTCAAAATGGAAGTTTAAAGGACGCTCTCTCAGGGAAGTCAGGAATTAGATTAGATTGGATTAGAAGGCTAAAAATTGCCCTTGGTACTGCCCGTGGTTTGGCTTATCTTCACGAACTTGTTAATCCTCCCATCATACATAGGGACATCAAATCAAACAATATTTTGCTGGATGACCGCCTGAATGCCAAAGTTTCTGATTTTGGTCTCTCCAAGTCTATGGTTGATTCTGAGAAAGATCATGTTACCACTCAAGTTAAAGGAACAATGGGTTACTTGGATCCAGAGTATTATATGTCTCAACAATTGACTGAGAAGAGTGACGTTTATAGCTTTGGAGTGCTCATGTTGGAGCTGATTTCAGCAAGAAGGCCGTTGGAACGAGGGAAGTATATTGTGAAAGAGGTTAGGAATGCACTTGATAAGACAAAAGGGTCATATGGTCTTGATGAGATCATTGACCCAGCCATTGGTCTAGCGTCCACCACACTGACACTGAGCGGTTTTGACAAGTTTGTGGATATGACCATGACATGTGTTAAAGAGTCAGGTTCTGACAGACCTAAAATGAGTGATGTGGTAAGAGAAATCGAAAACATCTTGAAGTCAGCCGGTGCAAACCCCACTGAGGAATCACCCTCCATCTCTTCTAGTTATGAGGAGGTCAGCAGAGGGAGCTCAAGCCATCCTTATAATAGCAACGACACCTTTGATTTGAGTGCAGGACTTCCATATCCAAAAGTTGACCCCAAGTAA

Predicted protein sequences of Glyma07g40110

Limit To All Plant Sequences

>Glyma07g40110.2   sequence type=predicted peptide   gene model=Glyma07g40110   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSQRVLVVLLLVLNYVLVAEGETADGDLTTFLSLINTWENTPPNWVGSDPCDDWVGIKCKNSHITSITLSSTGLAGQLSGDIGSLSELETLDLSYNKDLTGPLPESIGELKKLATLILVGCSFKGPIPDSIGNMQELLFLSLNSNSFSGPIPHSIGNLSKLYWLDLADNQLQGNIPVSSGDISGLDKLHHAKHFHLGKNNLSGSIPPQLFSSEMALIHVLLESNQLTDKIPPTLGLVQSLEVVRLDGNSLNGPVPPNINNLTHVQDLYLSNNKLSGSLPNLTGMNALSYLDMSNNSFKPLDFPGWFSTLKSLTTLKMERTQLQGQVPTSLFTLINLQIVVLKDNKINGTLDIGSSYSNQLRLVDFETNSIDSFEQKDEVPNVKIKIILKDNPICQENGELESYCSSSQPNVSYSTPLNNCQPGTCSSEQILSPNCICAYPYSGTLTFRSPPFLDFDNKTYYSMLEEGLMNSFKSHFLPVDSVLLSHPSKDSTQYLELSLQVFPSGQNHFNRTGAFSIGFLLSNQTFKPPKVFGPFYFVGDKYEHFENSEGLTESSKSSNIGIIIGAAVGGLVLLVLLLLAGLYAFRQKKRAEKAIGQSNPFRRWDTASSKSEVPQLTEARMFSFEELKKYTKNFSQVNGIGSGGFGKVYKGNLPNGQVIAIKRAQKESMQGKLEFKAEIELLSRVHHKNLVSLVGFCFEHEEQMLVYEYVQNGSLKDALSGKSGIRLDWIRRLKIALGTARGLAYLHELVNPPIIHRDIKSNNILLDDRLNAKVSDFGLSKSMVDSEKDHVTTQVKGTMGYLDPEYYMSQQLTEKSDVYSFGVLMLELISARRPLERGKYIVKEVRNALDKTKGSYGLDEIIDPAIGLASTTLTLSGFDKFVDMTMTCVKESGSDRPKMSDVVREIENILKSAGANPTEESPSISSSYEEVSRGSSSHPYNSNDTFDLSAGLPYPKVDPK*

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