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Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT1G79610 | AT | Annotation by Michelle Graham. TAIR10: Na+/H+ antiporter 6 | chr1:29953089-29957070 REVERSE LENGTH=535 | SoyBase | E_val: 0 | ISS |
| GO:0006812 | GO-bp | Annotation by Michelle Graham. GO Biological Process: cation transport | SoyBase | N/A | ISS |
| GO:0006814 | GO-bp | Annotation by Michelle Graham. GO Biological Process: sodium ion transport | SoyBase | N/A | ISS |
| GO:0006885 | GO-bp | Annotation by Michelle Graham. GO Biological Process: regulation of pH | SoyBase | N/A | ISS |
| GO:0010351 | GO-bp | Annotation by Michelle Graham. GO Biological Process: lithium ion transport | SoyBase | N/A | ISS |
| GO:0035725 | GO-bp | Annotation by Michelle Graham. GO Biological Process: sodium ion transmembrane transport | SoyBase | N/A | ISS |
| GO:0055085 | GO-bp | Annotation by Michelle Graham. GO Biological Process: transmembrane transport | SoyBase | N/A | ISS |
| GO:0005737 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm | SoyBase | N/A | ISS |
| GO:0005768 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: endosome | SoyBase | N/A | ISS |
| GO:0016021 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: integral to membrane | SoyBase | N/A | ISS |
| GO:0015299 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: solute:hydrogen antiporter activity | SoyBase | N/A | ISS |
| GO:0015385 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: sodium:hydrogen antiporter activity | SoyBase | N/A | ISS |
| KOG1965 | KOG | Sodium/hydrogen exchanger protein | JGI | ISS | |
| PTHR10110 | Panther | SODIUM/HYDROGEN EXCHANGER | JGI | ISS | |
| PF00999 | PFAM | Sodium/hydrogen exchanger family | JGI | ISS | |
| UniRef100_I1KNP2 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Sodium/hydrogen exchanger n=1 Tax=Glycine max RepID=I1KNP2_SOYBN | SoyBase | E_val: 0 | ISS |
| UniRef100_UPI00023391D7 | UniRef | Annotation by Michelle Graham. Best UniRef hit: UPI00023391D7 related cluster n=1 Tax=unknown RepID=UPI00023391D7 | SoyBase | E_val: 0 | ISS |
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Glyma07g40070 not represented in the dataset |
Glyma07g40070 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.07g270400 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma07g40070.3 sequence type=transcript gene model=Glyma07g40070 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high CTTGGGGGAAGGAGTTGAGCTATGGTAATTAAGGAATGCAACAAAACACAAGTGAGTGAAGAGAAAAAAGGGTTGGGTGAGGAAAACGTCCCACACACTTATAAGATAAAGTCAAAAGTGCACTTTGTGTTGATAAAGAGGTGGCGAAGTAGCTTTGTTCCACGTGGCGAGCGTAAGAGTAATGGGTTGAATAATTGATAGCAGGCAATGCAGAGGTGAGAAGGAAAGGGATCGATGATGGAGGAGGATGGGACCAGCAAAGAGCAGCAGCAGGCGGCGGGAGTGGGAATTCTTCTTCAGATAATGATGTTAGTTTTGTCATTCGTCTTAGGTCACGTCCTTCGTCGCAAGAAGATTTACGTTCTTCCCGAAGCCAGCGCTTCTCTTCTCATTGGCTTACTCGTTGGTACTCTCGCTAACATTTCTCACACTCAAACCAGCATCAGGGCGTGGTTCAATTTTCACGAGGAGTTCTTCTTCCTCTTCCTTTTGCCTCCTATCATATTTCAGTCTGGCTTCAGTCTCTCTCCCAAGCCTTTCTTCGCTAATTTCGGAGCCATTGTTACATTTGCTATATTCGGCACCTTTCTGGCTTCCATTGTCACCGGTGTCTTGGTTTATCTTGGTGGGTTGATGTACCTCATGTACAGACTGCCTTTTGTCGAGTGCCTAATGTTTGGTGCACTTATATCCGCCACGGACCCTGTTACTGTTTTGTCCATTTTTCAGGAGCTTGGCACAGATGTCAATCTATATGCCTTGGTTTTTGGAGAATCTGTTTTGAATGATGCAATGGCTATTTCTCTGTACAGGACAATGTCAGTAGTTAAAAGTCATCCATCTGGACAAAATTTCTTCATGGTGATTGTTAGATTTTTGGAGACTTTTGTTGGCTCAATGTCTTCTGGTGTTGGAGTTGGATTTATATCTGCTTTACTATTTAAGTATGCAGGGTTGGATATTGACAATCTTCAGAACTTGGAGAGCTGTCTTTTTGTTCTTTTCCCATACTTCTCGTACATGCTTGCAGAAGGTCTTGGACTGTCTGGTATTGTGTCAATATTGTTCACAGGAATGGTCATGAAGCATTACACATATTCAAATTTGTCACGTAGTTCTCAAAGATTTGTCTCTGCTTTTTTTGAGTTGATATCATCATTAGCAGAGACATTTGTATTTATCTACATGGGCTTTGATATTGCTATGGAGAAACATAGCTGGTCACATGTTGGATTTATATTCTTCTCCATTATATTCATTGGAATTGCAAGGGCAGCCAATGTGTTCTCTTGTGCTTATCTAGTCAACTTGATCAGACCTGCCTATCGACAAATACCGCCAAAACACCAGAAAGCACTTTGGTATAGTGGACTTCGAGGGGCAATGGCCTTTGCCCTTGCTCTGCAATCAATTCATGATCTGCCAGAAGGACATGGACAGACCATCTTAACTGCAACTACAGCAATAGTTGTTTTGACGGTATTACTGATTGGCGGTTCAACGGGCACCATGCTGGAAGCTTTAGAAGTTGTAGGTAGTGACAGTCCTGTCGAGAGTCCTTTGGCTTCGAATTTTGAGGGAAACAATGTGTATATTTCTCCTGATGATGAAGAACCGTCATCAGGGAACAAAATCAAGATGAAGCTACAAGAATTCCAAAGGAGTGCTGCATCTTTTACAGCAATAGATAAAAACTACCTCACCCCATTCTTCACTAGTCAAAATGGAGATGAAGAAGATGAAGCTGTGCCTTTGACTTTGAAGAACGTGGGATTGGATGACCACGACCACTATTCGTCATGATATTTTTGAAACAACATGCTCAATAATACTACTTGAAGGTTCCTTTTTGTACACACCTTGAATCATGCAATATATAGACAACTTAGAGGAATTTCCATAATACAAGGATTCAGAATCTTACGTCAAGTAGGCAGAGTTAGGTTGGAAGACAGACATCTTGTCTGCGGCTTTAGTATTTTATGCCATGCAAGTTGATAACCATGCGTGTTTACTGACTCTAATTATCGGTAGTCCAAGAACCATTTACCACATACATATTACCGAACACATGATCTTCATACAAAAGAATATGCGTGTACAACGATCGAGGATCATAAAGAGAAATGCTAAAATGTTTCAACTTTGCAATAAATTCATCCGACTTTGAAAAAGTTTTCAACAATAAAATCACGATAGAATTGTACCCAAAAAAGTTCATGCTACCTTTCATACACTATTTATTTATGGTATTTGTACACGAACTTTGTTATAAAAAAATGTAACAAG
>Glyma07g40070.1 sequence type=CDS gene model=Glyma07g40070 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGATGGAGGAGGATGGGACCAGCAAAGAGCAGCAGCAGGCGGCGGGAGTGGGAATTCTTCTTCAGATAATGATGTTAGTTTTGTCATTCGTCTTAGGTCACGTCCTTCGTCGCAAGAAGATTTACGTTCTTCCCGAAGCCAGCGCTTCTCTTCTCATTGGCTTACTCGTTGGTACTCTCGCTAACATTTCTCACACTCAAACCAGCATCAGGGCGTGGTTCAATTTTCACGAGGAGTTCTTCTTCCTCTTCCTTTTGCCTCCTATCATATTTCAGTCTGGCTTCAGTCTCTCTCCCAAGCCTTTCTTCGCTAATTTCGGAGCCATTGTTACATTTGCTATATTCGGCACCTTTCTGGCTTCCATTGTCACCGGTGTCTTGGTTTATCTTGGTGGGTTGATGTACCTCATGTACAGACTGCCTTTTGTCGAGTGCCTAATGTTTGGTGCACTTATATCCGCCACGGACCCTGTTACTGTTTTGTCCATTTTTCAGGAGCTTGGCACAGATGTCAATCTATATGCCTTGGTTTTTGGAGAATCTGTTTTGAATGATGCAATGGCTATTTCTCTGTACAGGACAATGTCAGTAGTTAAAAGTCATCCATCTGGACAAAATTTCTTCATGGTGATTGTTAGATTTTTGGAGACTTTTGTTGGCTCAATGTCTTCTGGTGTTGGAGTTGGATTTATATCTGCTTTACTATTTAAGTATGCAGGGTTGGATATTGACAATCTTCAGAACTTGGAGAGCTGTCTTTTTGTTCTTTTCCCATACTTCTCGTACATGCTTGCAGAAGGTCTTGGACTGTCTGGTATTGTGTCAATATTGTTCACAGGAATGGTCATGAAGCATTACACATATTCAAATTTGTCACGTAGTTCTCAAAGATTTGTCTCTGCTTTTTTTGAGTTGATATCATCATTAGCAGAGACATTTGTATTTATCTACATGGGCTTTGATATTGCTATGGAGAAACATAGCTGGTCACATGTTGGATTTATATTCTTCTCCATTATATTCATTGGAATTGCAAGGGCAGCCAATGTGTTCTCTTGTGCTTATCTAGTCAACTTGATCAGACCTGCCTATCGACAAATACCGCCAAAACACCAGAAAGCACTTTGGTATAGTGGACTTCGAGGGGCAATGGCCTTTGCCCTTGCTCTGCAATCAATTCATGATCTGCCAGAAGGACATGGACAGACCATCTTAACTGCAACTACAGCAATAGTTGTTTTGACGGTATTACTGATTGGCGGTTCAACGGGCACCATGCTGGAAGCTTTAGAAGTTGTAGGTAGTGACAGTCCTGTCGAGAGTCCTTTGGCTTCGGTTAGTACCAGAACGAATTTTGAGGGAAACAATGTGTATATTTCTCCTGATGATGAAGAACCGTCATCAGGGAACAAAATCAAGATGAAGCTACAAGAATTCCAAAGGAGTGCTGCATCTTTTACAGCAATAGATAAAAACTACCTCACCCCATTCTTCACTAGTCAAAATGGAGATGAAGAAGATGAAGCTGTGCCTTTGACTTTGAAGAACGTGGGATTGGATGACCACGACCACTATTCGTCATGA >Glyma07g40070.3 sequence type=CDS gene model=Glyma07g40070 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGATGGAGGAGGATGGGACCAGCAAAGAGCAGCAGCAGGCGGCGGGAGTGGGAATTCTTCTTCAGATAATGATGTTAGTTTTGTCATTCGTCTTAGGTCACGTCCTTCGTCGCAAGAAGATTTACGTTCTTCCCGAAGCCAGCGCTTCTCTTCTCATTGGCTTACTCGTTGGTACTCTCGCTAACATTTCTCACACTCAAACCAGCATCAGGGCGTGGTTCAATTTTCACGAGGAGTTCTTCTTCCTCTTCCTTTTGCCTCCTATCATATTTCAGTCTGGCTTCAGTCTCTCTCCCAAGCCTTTCTTCGCTAATTTCGGAGCCATTGTTACATTTGCTATATTCGGCACCTTTCTGGCTTCCATTGTCACCGGTGTCTTGGTTTATCTTGGTGGGTTGATGTACCTCATGTACAGACTGCCTTTTGTCGAGTGCCTAATGTTTGGTGCACTTATATCCGCCACGGACCCTGTTACTGTTTTGTCCATTTTTCAGGAGCTTGGCACAGATGTCAATCTATATGCCTTGGTTTTTGGAGAATCTGTTTTGAATGATGCAATGGCTATTTCTCTGTACAGGACAATGTCAGTAGTTAAAAGTCATCCATCTGGACAAAATTTCTTCATGGTGATTGTTAGATTTTTGGAGACTTTTGTTGGCTCAATGTCTTCTGGTGTTGGAGTTGGATTTATATCTGCTTTACTATTTAAGTATGCAGGGTTGGATATTGACAATCTTCAGAACTTGGAGAGCTGTCTTTTTGTTCTTTTCCCATACTTCTCGTACATGCTTGCAGAAGGTCTTGGACTGTCTGGTATTGTGTCAATATTGTTCACAGGAATGGTCATGAAGCATTACACATATTCAAATTTGTCACGTAGTTCTCAAAGATTTGTCTCTGCTTTTTTTGAGTTGATATCATCATTAGCAGAGACATTTGTATTTATCTACATGGGCTTTGATATTGCTATGGAGAAACATAGCTGGTCACATGTTGGATTTATATTCTTCTCCATTATATTCATTGGAATTGCAAGGGCAGCCAATGTGTTCTCTTGTGCTTATCTAGTCAACTTGATCAGACCTGCCTATCGACAAATACCGCCAAAACACCAGAAAGCACTTTGGTATAGTGGACTTCGAGGGGCAATGGCCTTTGCCCTTGCTCTGCAATCAATTCATGATCTGCCAGAAGGACATGGACAGACCATCTTAACTGCAACTACAGCAATAGTTGTTTTGACGGTATTACTGATTGGCGGTTCAACGGGCACCATGCTGGAAGCTTTAGAAGTTGTAGGTAGTGACAGTCCTGTCGAGAGTCCTTTGGCTTCGAATTTTGAGGGAAACAATGTGTATATTTCTCCTGATGATGAAGAACCGTCATCAGGGAACAAAATCAAGATGAAGCTACAAGAATTCCAAAGGAGTGCTGCATCTTTTACAGCAATAGATAAAAACTACCTCACCCCATTCTTCACTAGTCAAAATGGAGATGAAGAAGATGAAGCTGTGCCTTTGACTTTGAAGAACGTGGGATTGGATGACCACGACCACTATTCGTCATGA
>Glyma07g40070.1 sequence type=predicted peptide gene model=Glyma07g40070 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MMEEDGTSKEQQQAAGVGILLQIMMLVLSFVLGHVLRRKKIYVLPEASASLLIGLLVGTLANISHTQTSIRAWFNFHEEFFFLFLLPPIIFQSGFSLSPKPFFANFGAIVTFAIFGTFLASIVTGVLVYLGGLMYLMYRLPFVECLMFGALISATDPVTVLSIFQELGTDVNLYALVFGESVLNDAMAISLYRTMSVVKSHPSGQNFFMVIVRFLETFVGSMSSGVGVGFISALLFKYAGLDIDNLQNLESCLFVLFPYFSYMLAEGLGLSGIVSILFTGMVMKHYTYSNLSRSSQRFVSAFFELISSLAETFVFIYMGFDIAMEKHSWSHVGFIFFSIIFIGIARAANVFSCAYLVNLIRPAYRQIPPKHQKALWYSGLRGAMAFALALQSIHDLPEGHGQTILTATTAIVVLTVLLIGGSTGTMLEALEVVGSDSPVESPLASVSTRTNFEGNNVYISPDDEEPSSGNKIKMKLQEFQRSAASFTAIDKNYLTPFFTSQNGDEEDEAVPLTLKNVGLDDHDHYSS* >Glyma07g40070.3 sequence type=predicted peptide gene model=Glyma07g40070 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MMEEDGTSKEQQQAAGVGILLQIMMLVLSFVLGHVLRRKKIYVLPEASASLLIGLLVGTLANISHTQTSIRAWFNFHEEFFFLFLLPPIIFQSGFSLSPKPFFANFGAIVTFAIFGTFLASIVTGVLVYLGGLMYLMYRLPFVECLMFGALISATDPVTVLSIFQELGTDVNLYALVFGESVLNDAMAISLYRTMSVVKSHPSGQNFFMVIVRFLETFVGSMSSGVGVGFISALLFKYAGLDIDNLQNLESCLFVLFPYFSYMLAEGLGLSGIVSILFTGMVMKHYTYSNLSRSSQRFVSAFFELISSLAETFVFIYMGFDIAMEKHSWSHVGFIFFSIIFIGIARAANVFSCAYLVNLIRPAYRQIPPKHQKALWYSGLRGAMAFALALQSIHDLPEGHGQTILTATTAIVVLTVLLIGGSTGTMLEALEVVGSDSPVESPLASNFEGNNVYISPDDEEPSSGNKIKMKLQEFQRSAASFTAIDKNYLTPFFTSQNGDEEDEAVPLTLKNVGLDDHDHYSS*
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