Glyma07g40040 - SoyBase

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Report for Sequence Feature Glyma07g40040

Feature Type:	gene_model
Chromosome:	Gm07
Start:	44334230
stop:	44340662
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma07g40040

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G28560	AT	Annotation by Michelle Graham. TAIR10: snRNA activating complex family protein \| chr1:10038197-10040382 REVERSE LENGTH=375	SoyBase	E_val: 2.00E-114	ISS
GO:0009301	GO-bp	Annotation by Michelle Graham. GO Biological Process: snRNA transcription	SoyBase	N/A	ISS
GO:0009887	GO-bp	Annotation by Michelle Graham. GO Biological Process: organ morphogenesis	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0003677	GO-mf	Annotation by Michelle Graham. GO Molecular Function: DNA binding	SoyBase	N/A	ISS
KOG2664	KOG	Small nuclear RNA activating protein complex - 50kD subunit (SNAP50)	JGI		ISS
PTHR13421	Panther	FAMILY NOT NAMED	JGI		ISS
PTHR13421:SF7	Panther	SUBFAMILY NOT NAMED	JGI		ISS
PF12251	PFAM	snRNA-activating protein of 50kDa MW C terminal	JGI		ISS
UniRef100_I1KNN6	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1KNN6_SOYBN	SoyBase	E_val: 0	ISS
UniRef100_Q9S7F0	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: F1K23.20 n=1 Tax=Arabidopsis thaliana RepID=Q9S7F0_ARATH	SoyBase	E_val: 1.00E-130	ISS

Expression Patterns of Glyma07g40040

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma07g40040 not represented in the dataset	Glyma07g40040 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma07g40040 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.07g270100	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma07g40040

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma07g40040

Limit To All Plant Sequences

>Glyma07g40040.2   sequence type=transcript   gene model=Glyma07g40040   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
TACATATTGTACACACTCACTGCTCTGTATCTCTATCACTAAATTTCAAAATTTGCTCTCTCTAATCTTAAACTTGATTGCATCAGTGAGGAAGAATGGAACGTTCAATTCCAGAGGCTGCAGAATGTGATCTCTCCATTCCAATTCCAAGGGGTGGACCCATTTACGTTCCTAACATGGTCGGCCCCTCCACTAGGGTTCCTCACTTTCAGACTTGTCTTCTTTCTGAACTTCGGAATCTCGAGGCTGAATTGTCTGAAGATTTTTCTCACCTTGATATCTCGGTGGATGACCTTAAAATATTTACAGAGGATGACTTAATGGATATGGCTCTCAAAGAAGTATTTCAAGGTAGGGAGAACGATGAAAATCATCCTCCGCTTCTGGACCAACCCAATGCGAGGTTCGGTGAGAAGAAATCAAATAGAAAGAGGAAGGGAACAAATGATTCTGTTCTTGAAAGTGATTGTATAGAAAAGGTGGAACAAGTGGTGAGAATCAAACAGAAGCAAGAAGAAGACAAAGCATCAGTCAAACTTCATTCATTTGATCGCAGGATCAATGAAGCTGTCCATAAATCAACTAGAACAGAAAGGATGAGGACCCTTAGGTCTACAAGTTCTACCAGAAAGGTCAACACTGCCAGCCTTCAGGAACACTTACCTGTGCTGTATCCAGAAGTTGTTCTATCTGTAGAGGTTTACCATAATGTTCGAAAGGGTACCAAGATCCAAGAGTTGTTAGTTCTTGGAGGTCAGACCTTAACTGCTCTGAGGGACAAGATTTTTTGCTCAACGGACCAGGTGATGCACAAAGCTGGGCAGCATGATCCTTCTGGTTATTTTCTCATCGAAGATGTATTCTGTCCCGATTTGAGGGATCCGTCTGCTATTGATCTCACAAGACCTATACTGGATTGGCTCAGAGACTCCAAGGAGGAGGCCCAAAAGAAATGGGAATATATTATAACTGGGGAACTGCAGAAGAAACAAAAGGCAATCATGGGTGAGAAATCTGCATCACAATTGCCTCATTTTAGATCCATTGAGATGCATAAGATACGTTTTTGTGACTTAAGCTTTCAACTTGGTGCTGGATACCTCTATTGTCATCAGGGTGACTGCACCCATACCTTAGTGATACGAGATATGAGGTTAATTCACCCTGAAGACGTTCATAATCGAGCTGTTTATCCAATAATCACGTTTCAGTTGAAGTTGCGTTTTCAGAAATGCAATGTTTGCAAAATATTCAGAGCTACAAAGGTCACGGTGGATGACAAATGGACACCAGAAAACCCTTGTTATTTCTGTGATGAATGTTTTTCCCTACTTCACCAAGCAGATGATGGCACTCTATTATATACTGACTTTGTAGAGTATGATTACAACCATGATTAATTGCTGTTAGCCTTGGAAGAACACCCACAGGCAACTAAAGTTCTTTACAATAATCTTATAGAAAATTGTTTTTTCATTGTGTATTGAATTCTGTATCTTTGGAAATTAAAATCTATAATGAGGTCCACAGGGTAGGAGATAAATTGTGTCAACCATGGAGATGTATTGTATATGTACAAATGTTTATGATCATGTTTTTCAGATCTACTGCAAGTAGAACTATAGAAAAGAATAGGTTCAGATCATGTTTTGTATCATACCAAAAAACATTAAAATACTATTCAGTTTCTACCTCTAAGTATAAAGTTAATATATTTTCAACTCAACAGGTTCAGTTTAAACGTGCC

>Glyma07g40040.3   sequence type=transcript   gene model=Glyma07g40040   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
TACATATTGTACACACTCACTGCTCTGTATCTCTATCACTAAATTTCAAAATTTGCTCTCTCTAATCTTAAACTTGATTGCATCAGTGAGGAAGAATGGAACGTTCAATTCCAGAGGCTGCAGAATGTGATCTCTCCATTCCAATTCCAAGGGGTGGACCCATTTACGTTCCTAACATGGTCGGCCCCTCCACTAGGGTTCCTCACTTTCAGACTTGTCTTCTTTCTGAACTTCGGAATCTCGAGGCTGAATTGTCTGAAGATTTTTCTCACCTTGATATCTCGGTGGATGACCTTAAAATATTTACAGAGGATGACTTAATGGATATGGCTCTCAAAGAAGTATTTCAAGGTAGGGAGAACGATGAAAATCATCCTCCGCTTCTGGACCAACCCAATGCGAGGTTCGGTGAGAAGAAATCAAATAGAAAGAGGAAGGGAACAAATGATTCTGTTCTTGAAAGTGATTGTATAGAAAAGGTGGAACAAGTGGTGAGAATCAAACAGAAGCAAGAAGAAGACAAAGCATCAGTCAAACTTCATTCATTTGATCGCAGGATCAATGAAGCTGTCCATAAATCAACTAGAACAGAAAGGATGAGGACCCTTAGGTCTACAAGTTCTACCAGAAAGGTCAACACTGCCAGCCTTCAGGAACACTTACCTGTGCTGTATCCAGAAGTTGTTCTATCTGTAGAGGTTTACCATAATGTTCGAAAGGGTACCAAGATCCAAGAGTTGTTAGTTCTTGGAGGTCAGACCTTAACTGCTCTGAGGGACAAGATTTTTTGCTCAACGGACCAGGTGATGCACAAAGCTGGGCAGCATGATCCTTCTGGTTATTTTCTCATCGAAGATGTATTCTGTCCCGATTTGAGGGATCCGTCTGCTATTGATCTCACAAGACCTATACTGGATTGGCTCAGAGACTCCAAGGAGGAGGCCCAAAAGAAATGGGAATATATTATAACTGGGGAACTGCAGAAGAAACAAAAGGCAATCATGGGTGAGAAATCTGCATCACAATTGCCTCATTTTAGATCCATTGAGATGCATAAGATACGTTTTTGTGACTTAAGCTTTCAACTTGGTGCTGGATACCTCTATTGTCATCAGGTACTTTCCTTTTTCTGTCTCAGACTAATTTATACACACACTTTTGCTTTTAAATAAAAAATTGCTCACAAAACTTGGTATGGTAAATGTAGGGGAAGTTTGGCTTATGGTTGTATTGTTTTACTACTGTTGAATGCCTTTCAAGTTAAATGTGAAAATGTCAAATAGTATGATTTGACCTCCGTGACTTGATTCTAGATGTAGTCTGTTGGTTTTATTGAATAAAACATGTTCTTTAAATGAGACCATGCAAAGATGGATTAAGGTGACACAAGGAAGATCATATAAGCAAGTCGTTTTTGGGGTTTAGGGTAGAAGAATTTCTAAAACCAGTGCCTTTTTTCAGCACTTATCAGTGGCAGTTAATGCTTTCAATATTTGGTAATGACAAGGGCAGGTAGCTTTAACCTTTTAAAGGGCAACTAATTATCTTAGTATGGGAGCTAACTGATTCAATTACAAAACATGAGAAGGCCATCAACGATCGATATATAAATCAAAAGGGGAGATGGTTTATTGAGCTCTGACAAAGGGGAAATGTGATCTTTTGTTGAGTCCCAAATAAGATGATGTTTCATGCCAGATTGAGAGTATTATATATATTTCTAAAATTTGTATGTGTTTCACTTCATAGTTTTTCTCTTAAGTTATAATCAGAAAACATTTAATGTGGTTTGTTGTTCTCTGTGTGGAACCTGCAGGGTGACTGCACCCATACCTTAGTGATACGAGATATGAGGTTAATTCACCCTGAAGACGTTCATAATCGAGCTGTTTATCCAATAATCACGTTTCAGTTGAAGTTGCGTTTTCAGAAATGCAATGTTTGCAAAATATTCAGAGCTACAAAGGTCACGGTGGATGACAAATGGACACCAGAAAACCCTTGTTATTTCTGTGATGAATGTTTTTCCCTACTTCACCAAGCAGATGATGGCACTCTATTATATACTGACTTTGTAGAGTATGATTACAACCATGATTAATTGCTGTTAGCCTTGGAAGAACACCCACAGGCAACTAAAGTTCTTTACAATAATCTTATAGAAAATTGTTTTTTCATTGTGTATTGAATTCTGTATCTTTGGAAATTAAAATCTATAATGAGGTCCACAGGGTAGGAGATAAATTGTGTCAACCATGGAGATGTATTGTATATGTACAAATGTTTATGATCATGTTTTTCAGATCTACTGCAAGTAGAACTATAGAAAAGAATAGGTTCAGATCATGTTTTGTATCATACCAAAAAACATTAAAATACTATTCAGTTTCTACCTCTAAGTATAAAGTTAATATATTTTCAACTCAACAGGTTCAGTTTAAACGTGCC

Coding sequences of Glyma07g40040

Limit To All Plant Sequences

>Glyma07g40040.1   sequence type=CDS   gene model=Glyma07g40040   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAACGTTCAATTCCAGAGGCTGCAGAATGTGATCTCTCCATTCCAATTCCAAGGGGTGGACCCATTTACGTTCCTAACATGGTCGGCCCCTCCACTAGGGTTCCTCACTTTCAGACTTGTCTTCTTTCTGAACTTCGGAATCTCGAGGCTGAATTGTCTGAAGATTTTTCTCACCTTGATATCTCGGTGGATGACCTTAAAATATTTACAGAGGATGACTTAATGGATATGGCTCTCAAAGAAGTATTTCAAGGTAGGGAGAACGATGAAAATCATCCTCCGCTTCTGGACCAACCCAATGCGAGCAGGTTCGGTGAGAAGAAATCAAATAGAAAGAGGAAGGGAACAAATGATTCTGTTCTTGAAAGTGATTGTATAGAAAAGGTGGAACAAGTGGTGAGAATCAAACAGAAGCAAGAAGAAGACAAAGCATCAGTCAAACTTCATTCATTTGATCGCAGGATCAATGAAGCTGTCCATAAATCAACTAGAACAGAAAGGATGAGGACCCTTAGGTCTACAAGTTCTACCAGAAAGGTCAACACTGCCAGCCTTCAGGAACACTTACCTGTGCTGTATCCAGAAGTTGTTCTATCTGTAGAGGTTTACCATAATGTTCGAAAGGGTACCAAGATCCAAGAGTTGTTAGTTCTTGGAGGTCAGACCTTAACTGCTCTGAGGGACAAGATTTTTTGCTCAACGGACCAGGTGATGCACAAAGCTGGGCAGCATGATCCTTCTGGTTATTTTCTCATCGAAGATGTATTCTGTCCCGATTTGAGGGATCCGTCTGCTATTGATCTCACAAGACCTATACTGGATTGGCTCAGAGACTCCAAGGAGGAGGCCCAAAAGAAATGGGAATATATTATAACTGGGGAACTGCAGAAGAAACAAAAGGCAATCATGGGTGAGAAATCTGCATCACAATTGCCTCATTTTAGATCCATTGAGATGCATAAGATACGTTTTTGTGACTTAAGCTTTCAACTTGGTGCTGGATACCTCTATTGTCATCAGGGTGACTGCACCCATACCTTAGTGATACGAGATATGAGGTTAATTCACCCTGAAGACGTTCATAATCGAGCTGTTTATCCAATAATCACGTTTCAGTTGAAGTTGCGTTTTCAGAAATGCAATGTTTGCAAAATATTCAGAGCTACAAAGGTCACGGTGGATGACAAATGGACACCAGAAAACCCTTGTTATTTCTGTGATGAATGTTTTTCCCTACTTCACCAAGCAGATGATGGCACTCTATTATATACTGACTTTGTAGAGTATGATTACAACCATGATTAA

>Glyma07g40040.2   sequence type=CDS   gene model=Glyma07g40040   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAACGTTCAATTCCAGAGGCTGCAGAATGTGATCTCTCCATTCCAATTCCAAGGGGTGGACCCATTTACGTTCCTAACATGGTCGGCCCCTCCACTAGGGTTCCTCACTTTCAGACTTGTCTTCTTTCTGAACTTCGGAATCTCGAGGCTGAATTGTCTGAAGATTTTTCTCACCTTGATATCTCGGTGGATGACCTTAAAATATTTACAGAGGATGACTTAATGGATATGGCTCTCAAAGAAGTATTTCAAGGTAGGGAGAACGATGAAAATCATCCTCCGCTTCTGGACCAACCCAATGCGAGGTTCGGTGAGAAGAAATCAAATAGAAAGAGGAAGGGAACAAATGATTCTGTTCTTGAAAGTGATTGTATAGAAAAGGTGGAACAAGTGGTGAGAATCAAACAGAAGCAAGAAGAAGACAAAGCATCAGTCAAACTTCATTCATTTGATCGCAGGATCAATGAAGCTGTCCATAAATCAACTAGAACAGAAAGGATGAGGACCCTTAGGTCTACAAGTTCTACCAGAAAGGTCAACACTGCCAGCCTTCAGGAACACTTACCTGTGCTGTATCCAGAAGTTGTTCTATCTGTAGAGGTTTACCATAATGTTCGAAAGGGTACCAAGATCCAAGAGTTGTTAGTTCTTGGAGGTCAGACCTTAACTGCTCTGAGGGACAAGATTTTTTGCTCAACGGACCAGGTGATGCACAAAGCTGGGCAGCATGATCCTTCTGGTTATTTTCTCATCGAAGATGTATTCTGTCCCGATTTGAGGGATCCGTCTGCTATTGATCTCACAAGACCTATACTGGATTGGCTCAGAGACTCCAAGGAGGAGGCCCAAAAGAAATGGGAATATATTATAACTGGGGAACTGCAGAAGAAACAAAAGGCAATCATGGGTGAGAAATCTGCATCACAATTGCCTCATTTTAGATCCATTGAGATGCATAAGATACGTTTTTGTGACTTAAGCTTTCAACTTGGTGCTGGATACCTCTATTGTCATCAGGGTGACTGCACCCATACCTTAGTGATACGAGATATGAGGTTAATTCACCCTGAAGACGTTCATAATCGAGCTGTTTATCCAATAATCACGTTTCAGTTGAAGTTGCGTTTTCAGAAATGCAATGTTTGCAAAATATTCAGAGCTACAAAGGTCACGGTGGATGACAAATGGACACCAGAAAACCCTTGTTATTTCTGTGATGAATGTTTTTCCCTACTTCACCAAGCAGATGATGGCACTCTATTATATACTGACTTTGTAGAGTATGATTACAACCATGATTAA

>Glyma07g40040.3   sequence type=CDS   gene model=Glyma07g40040   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAACGTTCAATTCCAGAGGCTGCAGAATGTGATCTCTCCATTCCAATTCCAAGGGGTGGACCCATTTACGTTCCTAACATGGTCGGCCCCTCCACTAGGGTTCCTCACTTTCAGACTTGTCTTCTTTCTGAACTTCGGAATCTCGAGGCTGAATTGTCTGAAGATTTTTCTCACCTTGATATCTCGGTGGATGACCTTAAAATATTTACAGAGGATGACTTAATGGATATGGCTCTCAAAGAAGTATTTCAAGGTAGGGAGAACGATGAAAATCATCCTCCGCTTCTGGACCAACCCAATGCGAGGTTCGGTGAGAAGAAATCAAATAGAAAGAGGAAGGGAACAAATGATTCTGTTCTTGAAAGTGATTGTATAGAAAAGGTGGAACAAGTGGTGAGAATCAAACAGAAGCAAGAAGAAGACAAAGCATCAGTCAAACTTCATTCATTTGATCGCAGGATCAATGAAGCTGTCCATAAATCAACTAGAACAGAAAGGATGAGGACCCTTAGGTCTACAAGTTCTACCAGAAAGGTCAACACTGCCAGCCTTCAGGAACACTTACCTGTGCTGTATCCAGAAGTTGTTCTATCTGTAGAGGTTTACCATAATGTTCGAAAGGGTACCAAGATCCAAGAGTTGTTAGTTCTTGGAGGTCAGACCTTAACTGCTCTGAGGGACAAGATTTTTTGCTCAACGGACCAGGTGATGCACAAAGCTGGGCAGCATGATCCTTCTGGTTATTTTCTCATCGAAGATGTATTCTGTCCCGATTTGAGGGATCCGTCTGCTATTGATCTCACAAGACCTATACTGGATTGGCTCAGAGACTCCAAGGAGGAGGCCCAAAAGAAATGGGAATATATTATAACTGGGGAACTGCAGAAGAAACAAAAGGCAATCATGGGTGAGAAATCTGCATCACAATTGCCTCATTTTAGATCCATTGAGATGCATAAGATACGTTTTTGTGACTTAAGCTTTCAACTTGGTGCTGGATACCTCTATTGTCATCAGGTACTTTCCTTTTTCTGTCTCAGACTAATTTATACACACACTTTTGCTTTTAAATAA

Predicted protein sequences of Glyma07g40040

Limit To All Plant Sequences

>Glyma07g40040.1   sequence type=predicted peptide   gene model=Glyma07g40040   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MERSIPEAAECDLSIPIPRGGPIYVPNMVGPSTRVPHFQTCLLSELRNLEAELSEDFSHLDISVDDLKIFTEDDLMDMALKEVFQGRENDENHPPLLDQPNASRFGEKKSNRKRKGTNDSVLESDCIEKVEQVVRIKQKQEEDKASVKLHSFDRRINEAVHKSTRTERMRTLRSTSSTRKVNTASLQEHLPVLYPEVVLSVEVYHNVRKGTKIQELLVLGGQTLTALRDKIFCSTDQVMHKAGQHDPSGYFLIEDVFCPDLRDPSAIDLTRPILDWLRDSKEEAQKKWEYIITGELQKKQKAIMGEKSASQLPHFRSIEMHKIRFCDLSFQLGAGYLYCHQGDCTHTLVIRDMRLIHPEDVHNRAVYPIITFQLKLRFQKCNVCKIFRATKVTVDDKWTPENPCYFCDECFSLLHQADDGTLLYTDFVEYDYNHD*

>Glyma07g40040.2   sequence type=predicted peptide   gene model=Glyma07g40040   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MERSIPEAAECDLSIPIPRGGPIYVPNMVGPSTRVPHFQTCLLSELRNLEAELSEDFSHLDISVDDLKIFTEDDLMDMALKEVFQGRENDENHPPLLDQPNARFGEKKSNRKRKGTNDSVLESDCIEKVEQVVRIKQKQEEDKASVKLHSFDRRINEAVHKSTRTERMRTLRSTSSTRKVNTASLQEHLPVLYPEVVLSVEVYHNVRKGTKIQELLVLGGQTLTALRDKIFCSTDQVMHKAGQHDPSGYFLIEDVFCPDLRDPSAIDLTRPILDWLRDSKEEAQKKWEYIITGELQKKQKAIMGEKSASQLPHFRSIEMHKIRFCDLSFQLGAGYLYCHQGDCTHTLVIRDMRLIHPEDVHNRAVYPIITFQLKLRFQKCNVCKIFRATKVTVDDKWTPENPCYFCDECFSLLHQADDGTLLYTDFVEYDYNHD*

>Glyma07g40040.3   sequence type=predicted peptide   gene model=Glyma07g40040   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MERSIPEAAECDLSIPIPRGGPIYVPNMVGPSTRVPHFQTCLLSELRNLEAELSEDFSHLDISVDDLKIFTEDDLMDMALKEVFQGRENDENHPPLLDQPNARFGEKKSNRKRKGTNDSVLESDCIEKVEQVVRIKQKQEEDKASVKLHSFDRRINEAVHKSTRTERMRTLRSTSSTRKVNTASLQEHLPVLYPEVVLSVEVYHNVRKGTKIQELLVLGGQTLTALRDKIFCSTDQVMHKAGQHDPSGYFLIEDVFCPDLRDPSAIDLTRPILDWLRDSKEEAQKKWEYIITGELQKKQKAIMGEKSASQLPHFRSIEMHKIRFCDLSFQLGAGYLYCHQVLSFFCLRLIYTHTFAFK*

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