Glyma07g39980 - SoyBase

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Report for Sequence Feature Glyma07g39980

Feature Type:	gene_model
Chromosome:	Gm07
Start:	44304046
stop:	44306933
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma07g39980

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G09500	AT	Annotation by Michelle Graham. TAIR10: Ribosomal protein S19 family protein \| chr5:2954044-2954850 REVERSE LENGTH=150	SoyBase	E_val: 1.00E-91	ISS
GO:0006412	GO-bp	Annotation by Michelle Graham. GO Biological Process: translation	SoyBase	N/A	ISS
GO:0005737	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm	SoyBase	N/A	ISS
GO:0005840	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: ribosome	SoyBase	N/A	ISS
GO:0015935	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: small ribosomal subunit	SoyBase	N/A	ISS
GO:0022627	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytosolic small ribosomal subunit	SoyBase	N/A	ISS
GO:0003723	GO-mf	Annotation by Michelle Graham. GO Molecular Function: RNA binding	SoyBase	N/A	ISS
GO:0003735	GO-mf	Annotation by Michelle Graham. GO Molecular Function: structural constituent of ribosome	SoyBase	N/A	ISS
KOG0898	KOG	40S ribosomal protein S15	JGI		ISS
PTHR11880	Panther	40S RIBOSOMAL PROTEIN S15	JGI		ISS
PF00203	PFAM	Ribosomal protein S19	JGI		ISS
UniRef100_I1KNN1	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Glycine max RepID=I1KNN1_SOYBN	SoyBase	E_val: 6.00E-110	ISS
UniRef100_I3NML4	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: 40S ribosomal protein S15D n=2 Tax=rosids RepID=I3NML4_HEVBR	SoyBase	E_val: 3.00E-98	ISS

Expression Patterns of Glyma07g39980

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma07g39980

Paralog	Evidence	Comments
Glyma17g00820	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma07g39980 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.07g269600	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma07g39980

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma07g39980

Limit To All Plant Sequences

>Glyma07g39980.1   sequence type=CDS   gene model=Glyma07g39980   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCAGACGTTGAGGTTGATGTGGCGGCGGCGGCGGCGGCGGCGGCTGCAGGGCAGCCAAAGAAGAGAACGTTCAAGAAGTTCAGCTTCAGGGGGGTGGATCTGGACGCGCTTCTGGACATGTCCACTGACGAACTCGTGAAGATGTTCAGTGCTCGCGCACGCAGAAGGTTCCAGAGAGGTCTCACCAGAAAGCCCATGGCCTTGATTAAAAAGCTCCGCAAAGCGAAAAGGGAAGCACCAGCAGGTGAGAAGCCAGAACCAGTTCGCACCCATCTCCGCAACATGATTATTGTGCCTGAGATGATTGGTAGCATCATTGGAGTCTACAATGGCAAGACCTTCAACCAGGTTGAAATCAAACCCGAGATGATTGGACATTATCTCGCTGAGTTCTCTATTTCATACAAACCCGTCAAGCACGGTAGGCCTGGTATTGGTGCCACTCACTCTTCCAGGTTCATTCCTCTCAAGTGA

Predicted protein sequences of Glyma07g39980

Limit To All Plant Sequences

>Glyma07g39980.1   sequence type=predicted peptide   gene model=Glyma07g39980   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MADVEVDVAAAAAAAAAGQPKKRTFKKFSFRGVDLDALLDMSTDELVKMFSARARRRFQRGLTRKPMALIKKLRKAKREAPAGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK*

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