Glyma07g39920 - SoyBase

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Report for Sequence Feature Glyma07g39920

Feature Type:	gene_model
Chromosome:	Gm07
Start:	44260735
stop:	44269095
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma07g39920

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G03370	AT	Annotation by Michelle Graham. TAIR10: C2 calcium/lipid-binding and GRAM domain containing protein \| chr1:830968-834996 FORWARD LENGTH=1020	SoyBase	E_val: 0	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
KOG1032	KOG	Uncharacterized conserved protein, contains GRAM domain	JGI		ISS
PTHR16122	Panther	MCTP-RELATED	JGI		ISS
PTHR16122:SF15	Panther	OS08G0492400 PROTEIN	JGI		ISS
PF00168	PFAM	C2 domain	JGI		ISS
PF02893	PFAM	GRAM domain	JGI		ISS
UniRef100_G7ZZV2	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Protein kinase C beta type n=1 Tax=Medicago truncatula RepID=G7ZZV2_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_UPI00023391D2	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI00023391D2 related cluster n=1 Tax=unknown RepID=UPI00023391D2	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma07g39920

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma07g39920

Paralog	Evidence	Comments
Glyma17g00850	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma07g39920 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.07g269000	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma07g39920

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma07g39920

Limit To All Plant Sequences

>Glyma07g39920.1   sequence type=CDS   gene model=Glyma07g39920   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAAGCTCGTGGTTCGTGTGATTGAGGCAAAAAACTTGGCAACGACAGATTCCAATGGGCTAAGTGATTTGTACGTGCGGGTACAGTTGGGAAAACAAAAGTTCAAAACCAAAGTGGTGAAAAGTTTGAATCCAACGTGGGATGAAAAATTTGCTTTTTGGGTTGACGACCTTAAAGATTCGCTTGTTATCTCTGTGATGGATGAAGATAAGTTCTTTAATTATGAATATGTGGGAAGGCTTAAGGTGCCTATCTCACTTGTTTTTGAAGAGGAAATTAAATCCCTTGGCACTGCTTGGTATTCTTTGAAATCCAAAAACAAGAAGTACAAGAACAAGCAATGTGGTGAGATTCATTTGAGTATATTCATTTCCCAAAATAATGCCTCTGAGGAGTTAAATGACATTGGTGATCAGTTATTACCTCCAAGAAAATGTCCTGATGCAATTACCACTTCTCTTTCAATGTCTTCCACTGGCTTTTCAAGCTCGTCTTCTCCTGTAAGGGAAGAAACTACATCTTGCAGTTCTAAGGAGGAGAAATCTTGTATGCAACAAAGATCATTTGCTGGTCGAATTGCTCAAATTTTTAATAAAGGTCCTGATGTGTCTTCAGTGTCACCCAGCAGAAGTATTGACTTGGACCAATCTGAAACAAACAAAGCTGTAGTTGGTGAGATCAAGATTGAGGAAGATCAGTCCTCTAATGAGACTTTCGAAGAAACTATGAAAAAAATACAGTCTGCTGATCAAGGAAGTGAAATTCCTAACAATTTATCGGGAGGAGTGCTTATTGATCAATTATATATTGTTGCACCAGAAGACTTGAATGTATTACTATTTTCACCTGATTCTAATTTTCCCAAGTCATTATCAGAAGAACAGGGTACTTCAGAACTGCAAATTTGTCCTTGGAAGTTAGAGAATGGTGGGGAAACCTTGAAAAGATCACTTACTTACATCAAGGCTGCCACTAAATTAATTAAGGCTGTCAAAGGCTATGAGGACCAGACATATTTAAAAGCTGATGGGAAGAACTTTGCTGTTTTGGGCAGTGTCAGCACCCCAGATGTTATGTATGGCACCACCTTTAGAGTAGAAGTACTTTATGTGATCACACCTGGACCAGAGTTGCCATCAGGGGAACAGTGTTCACGTCTCGTGATATCTTGGCGAATGAATTTTTTACAGAGCACCATGATGAAAGGAATGATAGAAAGTGGAGCTCGGCAAGGTATGAAGGACAGCTTTGATCAGTATGCTACTTTGTTATGTCAGACTGTAAAGCCTGTTGTCTCAAAGGACCTTGGTTCTAGTAAGGAGCAAGCTTTGGCAACATTACGGCCTGAGCCCCAGTCAATCTTGAAGCTGGCAATGCAGTATTTAGCGAACTTCACAGTCTTCACAACATTCTTAATGGTATCATACGTGCTTGTCCATATTTATCTGGCAGCTCCTCGCACAATTCAAGGGCTTGAGTTTGTTGGGTTTGACTTACCAGATTCTATTGGTGAATTTGTTGTGTGCATTGTCTTGGTTCTTCAAGGTGAAAGGGTGTTGGGTTTAATCTCACGCTTCATGCAGGCCAGAGCCAGAGCACGCAAGGGTAGTGATCATGGAATTAAGGCACAAGGAGAAGGATGGATGCTAACTGTGGCCTTAATTGAAGGAAGCAATCTAGCTACTGTTGATTCTGGTGCATTCTGTGATCCATATGTGGTGTTTACTTGCAATGGGAAAACAAGAACCAGCTCAATTAAGTTCAAGAAATCTGATCCTTTATGGAATGAAATTTTTGAATTTGATGCAATGGATGACCCTCCTTCTGTGCTGGATGTGGAAGTTTATGATTTTGATGGACCCTGTGATAAAGCTGCATCTCTGGGACGTGTTGAAATCAATTTCCTTAAAACAAATATCTCAGATCTTGCTGATATATGGGTTTCTCTAGAAGGAAAGTTGGCTTTGGCATGTCATTCTAAGTTGCACTTGAAAGTTTTTTTGAACAACACTAGAGGTGGGGATGTTGTAAAACACTACATAAGTAAAATGGAGAAAGAGGTGGGGAAGAAGATTAATTTGCGGTCTCCTCAAACAAATTCAGCCTTTCAGAAACTCTTTGGGCTTCCACCTGAGGAATTTCTCATCAATGACTTCACCTGTCATTTGAAAAGAAAAATGCCCCTGCAGGGCCGCCTATTTGTTTCAGCAAGAATTATTGGATTTCATGCAAATTTGTTTGGACACAAGACAAAATTCTTTTTGCTTTGGGAGGACATTGAAGACATCCAAATCATTCCTCCTACATTTTCATCGATGGGCAGTCCGATAATTGTCATAACTCTTTGGCCAGGAAGAGGTGTGGATGCAAGGCATGGTGCAAAAACTCAAGATGAAGAAGGCAGACTGAAATTCCGGTTCCAGTCCTTTGTGTCTTTCAATGTTGCAAACAGGACTATCATGGCTCTCTGGAAGGCCAGATCCTTGAGTCCCGAGCAAAAGGTCCAGTTAGTTGAAGAAGACTCTGAAACTAAAAGCCTTAGAAGTGAGGAGAGTGGGTCATTCATTGGTCTTGGTGATGTCAGCATGTCCGAGGTTCATTCTAGTGCTCTTTCAGTTCCTGCCAGTTTTTTTATGGAGCTATTTAGTGGGGGTGAGTTGGATCGTATGTTCATGGAAAAATCTGGTTGTGTTAATTATTCTTATACCCCTTGGGTGTCTGAGAACAGTGATGTATATGAGAGGGCAATATATTACAAATTTGAGAAGCGTATTTCACGTTATAGAGTTGAAGTAACAAGCACTCAGCAAAGATCTCTTTTGGAAGGAAAGGGTTGGCTGTTGCAAGAGGTTATGAACTTCCATGGAGTTCCCCTTGGTGACTTTTTCAATCTGCACCTTCACTATCAAATTGAGGATTTGTCCCCAAAGGCAAATAGTTGTAAAGTACAGGTATTGTTTGGAACTGAATGGCTCAAAAGTACGAAACATCAGAAAAGAATTACAAAGAACATCCTAAAAAATCTGCAAGAACGTTTGAAGCTGACATTCAGTCTGGTTGAGAAGGAGTTTTTGTCTAAATAA

Predicted protein sequences of Glyma07g39920

Limit To All Plant Sequences

>Glyma07g39920.1   sequence type=predicted peptide   gene model=Glyma07g39920   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MKLVVRVIEAKNLATTDSNGLSDLYVRVQLGKQKFKTKVVKSLNPTWDEKFAFWVDDLKDSLVISVMDEDKFFNYEYVGRLKVPISLVFEEEIKSLGTAWYSLKSKNKKYKNKQCGEIHLSIFISQNNASEELNDIGDQLLPPRKCPDAITTSLSMSSTGFSSSSSPVREETTSCSSKEEKSCMQQRSFAGRIAQIFNKGPDVSSVSPSRSIDLDQSETNKAVVGEIKIEEDQSSNETFEETMKKIQSADQGSEIPNNLSGGVLIDQLYIVAPEDLNVLLFSPDSNFPKSLSEEQGTSELQICPWKLENGGETLKRSLTYIKAATKLIKAVKGYEDQTYLKADGKNFAVLGSVSTPDVMYGTTFRVEVLYVITPGPELPSGEQCSRLVISWRMNFLQSTMMKGMIESGARQGMKDSFDQYATLLCQTVKPVVSKDLGSSKEQALATLRPEPQSILKLAMQYLANFTVFTTFLMVSYVLVHIYLAAPRTIQGLEFVGFDLPDSIGEFVVCIVLVLQGERVLGLISRFMQARARARKGSDHGIKAQGEGWMLTVALIEGSNLATVDSGAFCDPYVVFTCNGKTRTSSIKFKKSDPLWNEIFEFDAMDDPPSVLDVEVYDFDGPCDKAASLGRVEINFLKTNISDLADIWVSLEGKLALACHSKLHLKVFLNNTRGGDVVKHYISKMEKEVGKKINLRSPQTNSAFQKLFGLPPEEFLINDFTCHLKRKMPLQGRLFVSARIIGFHANLFGHKTKFFLLWEDIEDIQIIPPTFSSMGSPIIVITLWPGRGVDARHGAKTQDEEGRLKFRFQSFVSFNVANRTIMALWKARSLSPEQKVQLVEEDSETKSLRSEESGSFIGLGDVSMSEVHSSALSVPASFFMELFSGGELDRMFMEKSGCVNYSYTPWVSENSDVYERAIYYKFEKRISRYRVEVTSTQQRSLLEGKGWLLQEVMNFHGVPLGDFFNLHLHYQIEDLSPKANSCKVQVLFGTEWLKSTKHQKRITKNILKNLQERLKLTFSLVEKEFLSK*

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