Glyma07g39900 - SoyBase

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Report for Sequence Feature Glyma07g39900

Feature Type:	gene_model
Chromosome:	Gm07
Start:	44251716
stop:	44253806
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma07g39900

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G47740	AT	Annotation by Michelle Graham. TAIR10: Adenine nucleotide alpha hydrolases-like superfamily protein \| chr5:19338688-19339683 FORWARD LENGTH=244	SoyBase	E_val: 4.00E-46	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0003674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: molecular function	SoyBase	N/A	ISS
PF00582	PFAM	Universal stress protein family	JGI		ISS
UniRef100_G7ZZT9	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: U-box domain-containing protein n=1 Tax=Medicago truncatula RepID=G7ZZT9_MEDTR	SoyBase	E_val: 3.00E-106	ISS
UniRef100_I1KNM2	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1KNM2_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma07g39900

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma07g39900

Paralog	Evidence	Comments
Glyma17g00870	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma07g39900 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.07g268800	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma07g39900

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma07g39900

Limit To All Plant Sequences

>Glyma07g39900.1   sequence type=CDS   gene model=Glyma07g39900   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCCATCAACAAGGTCATGGGAAATGGAGCACGATGAGTGCATCAGTTGTGGCGGTTTTATTGGGTTCAAGAGAAACCAAGTGATAGATTGCAGCAGCGAGATAGGAGATTCTGATACAGAGGAGTTGTTTGAGATAAATCTGAAGGAGAAGGAGCCTTTGGCTTTGGATGCAATAAGAGAAGACTGCGAGATCAGCACTGTGTTCTCGCTTGATATTGATATTCACGACGGCGGTAGCGGCAACGATGATGATGTTGTTTATGTGGCAGTAGGCAAGGATGGAGATTCGAGCATGGAAGCTCTTTCATGGGCATTGAAGCACGCCGTGACACCCTCTGCCACCGTTTGTATCGTACACGTTTTCCCTCAAGTCAAGCTCATTCCAAGTCCATTGGGGAAAATTCCAAGGAGCCACGTAAATCTAGAGTATGTTAACATGCATTTGACACAGGAGAAAGGCAAGAGAAAATTGCTCCTTCAAAAGTTCACTGACCTCTGCGTTGATTCGAAGGTTAAGGTGGAGATGAAGCTTATCGAGGGTGACAATGTTGCTAAAACCATCGTGGACCTTGTCGGAAATCTTAATATAAGGAAATTGGTGATTGGAATTACCAAATCTAATTTAAGAAAATCTGGGTCTAGAAGTCATAATTCCATAGCGGCCAAGGTATTGAAAAATGCACAGGAGAGCTGTGACATAAAAATCATCTGCGAAGGAAGAGAAGTGATCGACCAGATGAGTGATTGCACTTCACCACGCTCCATAGACGTCAAAGGGAGTTTGAGACTTTCACAGGAAAAAAATGAATCCCGTGGATTTGTCCCACTTAAGCATTTTATGCCCAGTTCGTTATGGTTATTTAGGTCCATCACCAAGATGAGATGA

Predicted protein sequences of Glyma07g39900

Limit To All Plant Sequences

>Glyma07g39900.1   sequence type=predicted peptide   gene model=Glyma07g39900   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MPSTRSWEMEHDECISCGGFIGFKRNQVIDCSSEIGDSDTEELFEINLKEKEPLALDAIREDCEISTVFSLDIDIHDGGSGNDDDVVYVAVGKDGDSSMEALSWALKHAVTPSATVCIVHVFPQVKLIPSPLGKIPRSHVNLEYVNMHLTQEKGKRKLLLQKFTDLCVDSKVKVEMKLIEGDNVAKTIVDLVGNLNIRKLVIGITKSNLRKSGSRSHNSIAAKVLKNAQESCDIKIICEGREVIDQMSDCTSPRSIDVKGSLRLSQEKNESRGFVPLKHFMPSSLWLFRSITKMR*

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