Glyma07g39890 - SoyBase

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Report for Sequence Feature Glyma07g39890

Feature Type:	gene_model
Chromosome:	Gm07
Start:	44233747
stop:	44238550
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma07g39890

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G47730	AT	Annotation by Michelle Graham. TAIR10: Sec14p-like phosphatidylinositol transfer family protein \| chr5:19334592-19336618 REVERSE LENGTH=341	SoyBase	E_val: 4.00E-179	ISS
GO:0006810	GO-bp	Annotation by Michelle Graham. GO Biological Process: transport	SoyBase	N/A	ISS
GO:0009723	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to ethylene stimulus	SoyBase	N/A	ISS
GO:0009738	GO-bp	Annotation by Michelle Graham. GO Biological Process: abscisic acid mediated signaling pathway	SoyBase	N/A	ISS
GO:0035556	GO-bp	Annotation by Michelle Graham. GO Biological Process: intracellular signal transduction	SoyBase	N/A	ISS
GO:0005737	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm	SoyBase	N/A	ISS
GO:0005794	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: Golgi apparatus	SoyBase	N/A	ISS
GO:0005215	GO-mf	Annotation by Michelle Graham. GO Molecular Function: transporter activity	SoyBase	N/A	ISS
KOG1471	KOG	Phosphatidylinositol transfer protein SEC14 and related proteins	JGI		ISS
PTHR23324	Panther	SEC14 RELATED PROTEIN	JGI		ISS
PTHR23324:SF18	Panther	SUBFAMILY NOT NAMED	JGI		ISS
PF00650	PFAM	CRAL/TRIO domain	JGI		ISS
PF03765	PFAM	CRAL/TRIO, N-terminus	JGI		ISS
UniRef100_I1KNM0	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1KNM0_SOYBN	SoyBase	E_val: 0	ISS
UniRef100_O48939	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Polyphosphoinositide binding protein Ssh1p n=1 Tax=Glycine max RepID=O48939_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma07g39890

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma07g39890

Paralog	Evidence	Comments
Glyma17g00890	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma07g39890 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.07g268700	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma07g39890

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma07g39890

Limit To All Plant Sequences

>Glyma07g39890.2   sequence type=transcript   gene model=Glyma07g39890   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
AAAACATTGGAGGTTAATAACTGAATTTTAATATAATTAGGAGAAAAAGAAATTAAAAAAAGAGGGTGGAATTTGTAGGTGAAGAACTTGGAGATAGGCCCGCCTTTGTTGAATCTTCATTTATGGTGTTTCCTTCTTTCTGGTACTTGTTGTTGTTCTTATTATATATTTAAACCTCTTCCTCCTCTTCTTCCTTTTGCTTCAAGGTGTGGTGTTTTGTGTTTCACATTTAAAGCAACACTGAAAAGAAAGGAAAGTGAAGTTGAGAGTTTGTTTAGGAAGAACAAGAAATGGGGGTTGGTTCCCAGGATGCCATCAAGCAGTTCCAGGCATTCATTGACCAAGTTGAGGAGCCTTTGCGAACAACGTTTCAGAATGTTCATCAAGGGTTTGTCACCGAAACTTTAATGCGGTTTCTAAAAGCAAGGGACTGGGATCCTTGCAAGGCACATAAAATGTTGGTTGACTGTTTAAATTGGAGGGTGCAAAATGAGATTGACAATATATTATCTAAACCAATTGTTCCTGCTGATTTATACAGAGCGGTGCGTGATTCACAACTCATAGGATTATCAGGTTACTCAAGAGAGGGTCTGCCTGTCTTTGCAATTGGTGTTGGGCTTAGCACATTTGACAAAGCATCTGTTCATTATTATGTGCAGTCACACATTCAAATTAATGAATATCGTGAGCGTATAATCTTGCCTTCTGCATCAAAGAAGCAGGGGCGACCTATTACCACTTGTATAAAGGTTTTAGACATGACTGGTCTGAAGTTATCAGCCCTGAATCAGATTAAGTTGCTAACTATTATATCATCCATTGATGATCTGAACTACCCTGAGAAGACAAATACTTATTACATTGTAAATGCTCCATACATATTTTCTGCTTGTTGGAAGGTTGTGAAGCCACTTTTACAAGAGAGGACAAGAAGAAAAATACAGGTGTTACCAGGTTGTGGACGAGATGAGCTATTGACTATCATGGATTACTCGTCTCTACCACATTTCTGTCGAAGAGAAGGCTCTGGATCATCCAGACATTCTGAGAGTGGTAGTGAAAATTGCTATTCCTTGGATCATCCCTTCCATCAAGAGCTCTACAATCACATCAAGCAGCAAGCCAGACTCCGTGAAGCTGTTGAACCCATCAAGCAGGGATCATTTCATGTAGATTTTCCAGTACCTCCAGATGATGAAGTTGAGATTGCCAAGACTATAGAGTCAGAGTTACATAAGTTTGAGAACGGAAATGGTGTCTGATACTTTCTTTTAGGATCTACTGTGGAGACCTCAAAATCAGAGATCTTTTGCTAGTACAACCAATGTAGAAGGACTCCACATCAGAATTACTTTTATCAGGATTCGGAAGAATTAGTTAGCGTTGTTTATGTATGTTAAAAGAGAAATTAAGGGTTAGTCAATTTAATGCAAATCCCAGCTTTACATCGTATCACAATGCTAGAGATCAATGTTAAATATAATATTTTATCCTTGTGTTTCCTGTCTCCTGATCTTTTGCATGTTTGGTCTTGATATTTCTTTACCAGTTCAAATATAAGATTATAATTTATGTTAAAGCATTGTTGAATGGCATAAGAGA

Coding sequences of Glyma07g39890

Limit To All Plant Sequences

>Glyma07g39890.1   sequence type=CDS   gene model=Glyma07g39890   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGGGTTGGTTCCCAGGATGCCATCAAGCAGTTCCAGGCATTCATTGACCAAGTTGAGGAGCCTTTGCGAACAACGTTTCAGAATGTTCATCAAGGGTTTGTCACCGAAACTTTAATGCGGTTTCTAAAAGCAAGGGACTGGGATCCTTGCAAGGCACATAAAATGTTGGTTGACTGTTTAAATTGGAGGGTGCAAAATGAGATTGACAATATATTATCTAAACCAATTGTTCCTGCTGATTTATACAGAGCGGTGCGTGATTCACAACTCATAGGATTATCAGGTTACTCAAGAGAGGGTCTGCCTGTCTTTGCAATTGGTGTTGGGCTTAGCACATTTGACAAAGCATCTGTTCATTATTATGTGCAGTCACACATTCAAATTAATGAATATCGTGAGCGTATAATCTTGCCTTCTGCATCAAAGAAGCAGGGGCGACCTATTACCACTTGTATAAAGGTTTTAGACATGACTGGTCTGAAGTTATCAGCCCTGAATCAGATTAAGTTGCTAACTATTATATCATCCATTGATGATCTGAACTACCCTGAGAAGACAAATACTTATTACATTGTAAATGCTCCATACATATTTTCTGCTTGTTGGAAGCAGGTTGTGAAGCCACTTTTACAAGAGAGGACAAGAAGAAAAATACAGGTGTTACCAGGTTGTGGACGAGATGAGCTATTGACTATCATGGATTACTCGTCTCTACCACATTTCTGTCGAAGAGAAGGCTCTGGATCATCCAGACATTCTGAGAGTGGTAGTGAAAATTGCTATTCCTTGGATCATCCCTTCCATCAAGAGCTCTACAATCACATCAAGCAGCAAGCCAGACTCCGTGAAGCTGTTGAACCCATCAAGCAGGGATCATTTCATGTAGATTTTCCAGTACCTCCAGATGATGAAGTTGAGATTGCCAAGACTATAGAGTCAGAGTTACATAAGTTTGAGAACGGAAATGGTGTCTGA

>Glyma07g39890.2   sequence type=CDS   gene model=Glyma07g39890   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGGGTTGGTTCCCAGGATGCCATCAAGCAGTTCCAGGCATTCATTGACCAAGTTGAGGAGCCTTTGCGAACAACGTTTCAGAATGTTCATCAAGGGTTTGTCACCGAAACTTTAATGCGGTTTCTAAAAGCAAGGGACTGGGATCCTTGCAAGGCACATAAAATGTTGGTTGACTGTTTAAATTGGAGGGTGCAAAATGAGATTGACAATATATTATCTAAACCAATTGTTCCTGCTGATTTATACAGAGCGGTGCGTGATTCACAACTCATAGGATTATCAGGTTACTCAAGAGAGGGTCTGCCTGTCTTTGCAATTGGTGTTGGGCTTAGCACATTTGACAAAGCATCTGTTCATTATTATGTGCAGTCACACATTCAAATTAATGAATATCGTGAGCGTATAATCTTGCCTTCTGCATCAAAGAAGCAGGGGCGACCTATTACCACTTGTATAAAGGTTTTAGACATGACTGGTCTGAAGTTATCAGCCCTGAATCAGATTAAGTTGCTAACTATTATATCATCCATTGATGATCTGAACTACCCTGAGAAGACAAATACTTATTACATTGTAAATGCTCCATACATATTTTCTGCTTGTTGGAAGGTTGTGAAGCCACTTTTACAAGAGAGGACAAGAAGAAAAATACAGGTGTTACCAGGTTGTGGACGAGATGAGCTATTGACTATCATGGATTACTCGTCTCTACCACATTTCTGTCGAAGAGAAGGCTCTGGATCATCCAGACATTCTGAGAGTGGTAGTGAAAATTGCTATTCCTTGGATCATCCCTTCCATCAAGAGCTCTACAATCACATCAAGCAGCAAGCCAGACTCCGTGAAGCTGTTGAACCCATCAAGCAGGGATCATTTCATGTAGATTTTCCAGTACCTCCAGATGATGAAGTTGAGATTGCCAAGACTATAGAGTCAGAGTTACATAAGTTTGAGAACGGAAATGGTGTCTGA

Predicted protein sequences of Glyma07g39890

Limit To All Plant Sequences

>Glyma07g39890.1   sequence type=predicted peptide   gene model=Glyma07g39890   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGVGSQDAIKQFQAFIDQVEEPLRTTFQNVHQGFVTETLMRFLKARDWDPCKAHKMLVDCLNWRVQNEIDNILSKPIVPADLYRAVRDSQLIGLSGYSREGLPVFAIGVGLSTFDKASVHYYVQSHIQINEYRERIILPSASKKQGRPITTCIKVLDMTGLKLSALNQIKLLTIISSIDDLNYPEKTNTYYIVNAPYIFSACWKQVVKPLLQERTRRKIQVLPGCGRDELLTIMDYSSLPHFCRREGSGSSRHSESGSENCYSLDHPFHQELYNHIKQQARLREAVEPIKQGSFHVDFPVPPDDEVEIAKTIESELHKFENGNGV*

>Glyma07g39890.2   sequence type=predicted peptide   gene model=Glyma07g39890   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGVGSQDAIKQFQAFIDQVEEPLRTTFQNVHQGFVTETLMRFLKARDWDPCKAHKMLVDCLNWRVQNEIDNILSKPIVPADLYRAVRDSQLIGLSGYSREGLPVFAIGVGLSTFDKASVHYYVQSHIQINEYRERIILPSASKKQGRPITTCIKVLDMTGLKLSALNQIKLLTIISSIDDLNYPEKTNTYYIVNAPYIFSACWKVVKPLLQERTRRKIQVLPGCGRDELLTIMDYSSLPHFCRREGSGSSRHSESGSENCYSLDHPFHQELYNHIKQQARLREAVEPIKQGSFHVDFPVPPDDEVEIAKTIESELHKFENGNGV*

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