Glyma07g39880 - SoyBase

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Report for Sequence Feature Glyma07g39880

Feature Type:	gene_model
Chromosome:	Gm07
Start:	44230857
stop:	44233722
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma07g39880

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G12150	AT	Annotation by Michelle Graham. TAIR10: Plant protein of unknown function (DUF827) \| chr1:4123530-4125328 REVERSE LENGTH=548	SoyBase	E_val: 5.00E-122	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0003674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: molecular function	SoyBase	N/A	ISS
PF05701	PFAM	Plant protein of unknown function (DUF827)	JGI		ISS
UniRef100_Q2HV31	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Prefoldin n=1 Tax=Medicago truncatula RepID=Q2HV31_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_UPI0002339066	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI0002339066 related cluster n=1 Tax=unknown RepID=UPI0002339066	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma07g39880

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma07g39880

Paralog	Evidence	Comments
Glyma17g00900	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma07g39880 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.07g268600	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma07g39880

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma07g39880

Limit To All Plant Sequences

>Glyma07g39880.1   sequence type=CDS   gene model=Glyma07g39880   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAATGGCCTCAAAAAGTTGAATTCTCCAAGGGGAGAGGTTGGAGAGATAGACACAAGGGCGCCATTCCAATCAGTCAAAGCTGCTGTTAGTTTATTTGGGGAAGTAGCCATCACTAGAGACAGATTTTCTGTCAAGAGAAGATCATCAGAGAATGTATATGAAAAGGAGACGCAGCTTATCTTGGCCCAAAAGGAATTAAACAAGATAAAGAAACAGGTAAATAATGCTGAGGCCATCAAAACCAAAGCACTTTCTGAGCTTGAGAATGCCAAGGAGATCCTTCAGAATTTGACAAGCAAGCTGGCTAACGTGAGAGAATGCAAGCAATCTGCAATGAAAGCAGCTGAATTGGTGAGGAACCAGAGCAAGCGATTTGAAAAGACACTATCCCTAAAAACCGTGGGATATGAAGTTTGGAGAAAAGAACTAGATCATGCAAGAAAAGCGTACACCACAACTATAACTGAACTAGATTCCTCCAAGCAACAACTCACCAAAATAAGGCAGGATTTTGATGCAGTTTTGGAGGCAAAGCTGGCAGCACTCCAAGCAGCAGGAGAGGCTCAGTATTCAGCAAAATTAAACTCAGAAAGGATTGGTGAACTCTCAAATGAAATTGCAACCATGAAAGCATCAATTGAACAATTGAAACTTGCCTCTGAACAATCCCAAGAAGAAAATGAAGCCCAACTTGTTGGTTATTACAAAACGGCCAAGCAAGAAGCACAGAGAAACTTGGAGTCCTTAAAGAATGAATACGACTCTGAACTCATGCAAAGTCTAGACGTCAAACTTGCTCAAACAAGTGCTGAGATTGAGGCTCTTCAAGAGAAAATTAAGAAGCTGCATGCTTCTAAGATGGATTCTGTGAGGCTTCTAACTTCAGAGCTTAAAGAAGCCACAAAGACACTTGAGGAGGTTGCTGAAGAAAAGAACTCCCTTAAGAAACTGGTGTTTTCTCTTAGGACAGAATTGAAGCAAGTTAAGAAGGAGCAAGATGAAGTGAAGGAGAAGGAACATGCAGCAGAAGCTCTTGCTGCTAACCTCACTAGTAAACTGCAAGGGAGCATGAGAGATGCAAGGCCTAAGCCAGGCACTGTCGATGACTTAGAAGCAAATATCTTCTATGTGCAGAGTGTGAAGATTTGGAAGTTACAATTGGAAACTGAAGGTGCAAGAAAAGAAGCAGAAGAGATGAGGAGAAAAGCTCAAGAGCTGAAGCAAGAAGCTGAAAAATCAAGGGCTGTGGCTAAAGAAGCAGAGGAAAAGCTTGAGCTCGTTCTGGTGGAGGCTGAAGAGGCAAAAGCAGCAGAACAAAGAGCCGTTAAGGAGATCAAGATTTTGTCTGAAGTGGGTAGAGTCCCGTACTCAAAATTCAATGGCAAGATCAAGATGTCAAATGAAGAGTTTGAGGCACTGAGAGCAAAGGCCAAGGAGTGTGAGGATTTGGTTGAAAAGAAAGAAGCAATTGTGATGGCAGAGCTGCAGGAAATCTATGCAAGAAAGAATGAAGTGGACAGAAAGGTGGAAACTAATCTGAAGGCAATTGAGGAAACAAAGGCTGCAGAGGAGACGGCTTTGTGGAGTGCAGAGATGGCAGATTCTGCAAAAGTGGCAATTGAAAGTGAACTTAGGAGGTGGCGTCAATAA

Predicted protein sequences of Glyma07g39880

Limit To All Plant Sequences

>Glyma07g39880.1   sequence type=predicted peptide   gene model=Glyma07g39880   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MNGLKKLNSPRGEVGEIDTRAPFQSVKAAVSLFGEVAITRDRFSVKRRSSENVYEKETQLILAQKELNKIKKQVNNAEAIKTKALSELENAKEILQNLTSKLANVRECKQSAMKAAELVRNQSKRFEKTLSLKTVGYEVWRKELDHARKAYTTTITELDSSKQQLTKIRQDFDAVLEAKLAALQAAGEAQYSAKLNSERIGELSNEIATMKASIEQLKLASEQSQEENEAQLVGYYKTAKQEAQRNLESLKNEYDSELMQSLDVKLAQTSAEIEALQEKIKKLHASKMDSVRLLTSELKEATKTLEEVAEEKNSLKKLVFSLRTELKQVKKEQDEVKEKEHAAEALAANLTSKLQGSMRDARPKPGTVDDLEANIFYVQSVKIWKLQLETEGARKEAEEMRRKAQELKQEAEKSRAVAKEAEEKLELVLVEAEEAKAAEQRAVKEIKILSEVGRVPYSKFNGKIKMSNEEFEALRAKAKECEDLVEKKEAIVMAELQEIYARKNEVDRKVETNLKAIEETKAAEETALWSAEMADSAKVAIESELRRWRQ*

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