Glyma07g39870 - SoyBase

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Report for Sequence Feature Glyma07g39870

Feature Type:	gene_model
Chromosome:	Gm07
Start:	44224114
stop:	44229002
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma07g39870

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G47720	AT	Annotation by Michelle Graham. TAIR10: Thiolase family protein \| chr5:19331762-19334145 FORWARD LENGTH=415	SoyBase	E_val: 0	ISS
GO:0008152	GO-bp	Annotation by Michelle Graham. GO Biological Process: metabolic process	SoyBase	N/A	ISS
GO:0016126	GO-bp	Annotation by Michelle Graham. GO Biological Process: sterol biosynthetic process	SoyBase	N/A	ISS
GO:0019745	GO-bp	Annotation by Michelle Graham. GO Biological Process: pentacyclic triterpenoid biosynthetic process	SoyBase	N/A	ISS
GO:0005737	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm	SoyBase	N/A	ISS
GO:0003985	GO-mf	Annotation by Michelle Graham. GO Molecular Function: acetyl-CoA C-acetyltransferase activity	SoyBase	N/A	ISS
KOG1390	KOG	Acetyl-CoA acetyltransferase	JGI		ISS
PTHR18919	Panther	ACETYL-COA C-ACYLTRANSFERASE	JGI		ISS
PTHR18919:SF7	Panther	ACETYL-COA C-ACETYLTRANSFERASE	JGI		ISS
PF00108	PFAM	Thiolase, N-terminal domain	JGI		ISS
PF02803	PFAM	Thiolase, C-terminal domain	JGI		ISS
UniRef100_G7ZZU7	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Acetyl-CoA acetyltransferase cytosolic n=1 Tax=Medicago truncatula RepID=G7ZZU7_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_I1KNL7	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Glycine max RepID=I1KNL7_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma07g39870

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma07g39870

Paralog	Evidence	Comments
Glyma17g00910	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma07g39870 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.07g268500	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma07g39870

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma07g39870

Limit To All Plant Sequences

>Glyma07g39870.2   sequence type=transcript   gene model=Glyma07g39870   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
TAGGATTAGGAAGACGCATTGCATGGCATGCAAAAGACAAGGTGAAGAAGATGGGCAAGTGGGTCCCTCCCTCCCTTAACATTATACCATACCAATCAAAAACGTTGTCTTTGATTTCTCTTCTCTTCTCTTTAGCTGCTTCTTCTGTCTCTCTAAACTAAACTAACATTAACATCACATCCGGATTGCTCTGTTACTGTGGATTAAAAGGCCGTCTTTCCTCATTTCTGACGTACGCTCCCCATCCATCCATGTCTACTTCTGCAAAATCCCGAGATGTTTGTATTGTTGGTGTTGCGCGGACGCCAATAGGTGGTTTACTTGGCACCCTATCATCTCTTTCTGCCACAGAGTTAGGCTCAATTGCTATTAAGAGTGCTCTCGAGAGAGCAAATGTTGATCCATCGCTTGTGCAAGAGGTGTTTTTTGGGAATGTTCTTAGTGCCAATTTAGGGCAGGCTCCTGCCAGACAGGCTGCATTAGGTGCAGGAATTCCTACATCTGTAATCTGCACTACTATTAACAAGGTCTGTGCATCAGGGATGAAAGCTACCATGCTTGCAGCACTCACCATACAATTTGGTCTCAATGATGTTGTTGTGGCTGGTGGTATGGAAAGCATGTCTAATGCACCTAAGTACCTTGCAGAGGCCAGGAAAGGATCTCGATATGGACACGATACCATCATTGATGGTATGGTCAAAGATGGCCTTTGGGATGTCTATAATAACTTTGGCATGGGTGCTTGTGCCGAACTATGTGCAGATCAGCATGTCATAACAAGAGATGAGCAGGATTCTTATGCCATTCGAAGCTTTGAGAGAGGAATATCTGCTCAAAATGCTGGTCATTTTGCTTGGGAGATAGTTCCGGTTGAAGTTTCCACTGGAAGAGGGAGGGCTTCCACAATTGTTGATAAAGATGAAGGTCTGGGGAAGTTTGATGCTGCAAAGTTAAGGAAGCTTAGACCAAGCTTTAAAGAGGTTGGGGGTTCTGTGACTGCTGGCAATGCTTCTAGCATAAGTGATGGTGCTGCTGCATTAGTGCTAGTGAGTGAAGAGAAGGCACGTGAGCTTGGATTGCATGTAATTGCAAAGATAAAAGGATATGGGGATGCAGCTAAGGCGCCTGAATTATTTACAACTGCTCCTTCCCTTGCAATACCAAAAGCTATATCAAATGCTGGTCTTGATGCTTCTCAAATTGATTATTATGAAATAAATGAAGCTTTTTCAGTTGTAGCTCTTGCAAATCAGAAGCTTCTTGCTCTTAATCCTGTGAGTGTTTAAGTGAATATGCTCATTTTTTTGGCTGTTCTAGCTGCTTCAGCATTTTGGTTCCTCCATTCTGCCATGGTATAGTGGCCCAATAATAGATAATTCATGTACTTCCTATCAAATGCAGGAAAAAGTTAACGTGTATGGTGGAGCTGTGTCATTGGGGCATCCCTTGGGTTGCAGTGGAGCTCGCATCTTAGTCACATTATTAGGGGTATTGAGACAGAAGAGAGGGAAGTATGGTGTTGCTGCCATCTGCAACGGGGGAGGAGGAGCATCTGCTCTTGTTCTTGAGCTCATGCCGGTTGCCGTGGGACGTTCTTTATTATGACAAAGATCATACTACTTTGCAACACTTGTACTTTTATTTTTTTCTCTTTTTTTAAAGGACAAAACATTTAATAAGTATAGTTACCAGCAAAGTATGAGTGATACTAGATTCAACCCTCTTAAGCAAAGTCTTGAGTTTGAGTACTGTGAATGAAAAAAATGTAATTGAGAAGAGATATCTCACTAAAGATTGTTTACCAGATTTCTCTATAAAGATTAGTCATTAACAAAATTAGTGGTACTCTACAATGACAACAAAAAGAAAAACATGTAATAACTAATAAGTTTGGTCAAAGGAAGAAATGGTTTTAGTAAGGCTCCACATATTGAAACTGTTTGCTGCTGTGCCTCTCTACT

Coding sequences of Glyma07g39870

Limit To All Plant Sequences

>Glyma07g39870.1   sequence type=CDS   gene model=Glyma07g39870   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTCTACTTCTGCAAAATCCCGAGATGTTTGTATTGTTGGTGTTGCGCGGACGCCAATAGGTGGTTTACTTGGCACCCTATCATCTCTTTCTGCCACAGAGTTAGGCTCAATTGCTATTAAGAGTGCTCTCGAGAGAGCAAATGTTGATCCATCGCTTGTGCAAGAGGTGTTTTTTGGGAATGTTCTTAGTGCCAATTTAGGGCAGGCTCCTGCCAGACAGGCTGCATTAGGTGCAGGAATTCCTACATCTGTAATCTGCACTACTATTAACAAGGTCTGTGCATCAGGGATGAAAGCTACCATGCTTGCAGCACTCACCATACAATTTGGTCTCAATGATGTTGTTGTGGCTGGTGGTATGGAAAGCATGTCTAATGCACCTAAGTACCTTGCAGAGGCCAGGAAAGGATCTCGATATGGACACGATACCATCATTGATGGTATGGTCAAAGATGGCCTTTGGGATGTCTATAATAACTTTGGCATGGGTGCTTGTGCCGAACTATGTGCAGATCAGCATGTCATAACAAGAGATGAGCAGGATTCTTATGCCATTCGAAGCTTTGAGAGAGGAATATCTGCTCAAAATGCTGGTCATTTTGCTTGGGAGATAGTTCCGGTTGAAGTTTCCACTGGAAGAGGGAGGGCTTCCACAATTGTTGATAAAGATGAAGGTCTGGGGAAGTTTGATGCTGCAAAGTTAAGGAAGCTTAGACCAAGCTTTAAAGAGGTTGGGGGTTCTGTGACTGCTGGCAATGCTTCTAGCATAAGTGATGGTGCTGCTGCATTAGTGCTAGTGAGTGAAGAGAAGGCACGTGAGCTTGGATTGCATGTAATTGCAAAGATAAAAGGATATGGGGATGCAGCTAAGGCGCCTGAATTATTTACAACTGCTCCTTCCCTTGCAATACCAAAAGCTATATCAAATGCTGGTCTTGATGCTTCTCAAATTGATTATTATGAAATAAATGAAGCTTTTTCAGTTGTAGCTCTTGCAAATCAGAAGCTTCTTGCTCTTAATCCTGAAAAAGTTAACGTGTATGGTGGAGCTGTGTCATTGGGGCATCCCTTGGGTTGCAGTGGAGCTCGCATCTTAGTCACATTATTAGGGGTATTGAGACAGAAGAGAGGGAAGTATGGTGTTGCTGCCATCTGCAACGGGGGAGGAGGAGCATCTGCTCTTGTTCTTGAGCTCATGCCGGTTGCCGTGGGACGTTCTTTATTATGA

>Glyma07g39870.2   sequence type=CDS   gene model=Glyma07g39870   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTCTACTTCTGCAAAATCCCGAGATGTTTGTATTGTTGGTGTTGCGCGGACGCCAATAGGTGGTTTACTTGGCACCCTATCATCTCTTTCTGCCACAGAGTTAGGCTCAATTGCTATTAAGAGTGCTCTCGAGAGAGCAAATGTTGATCCATCGCTTGTGCAAGAGGTGTTTTTTGGGAATGTTCTTAGTGCCAATTTAGGGCAGGCTCCTGCCAGACAGGCTGCATTAGGTGCAGGAATTCCTACATCTGTAATCTGCACTACTATTAACAAGGTCTGTGCATCAGGGATGAAAGCTACCATGCTTGCAGCACTCACCATACAATTTGGTCTCAATGATGTTGTTGTGGCTGGTGGTATGGAAAGCATGTCTAATGCACCTAAGTACCTTGCAGAGGCCAGGAAAGGATCTCGATATGGACACGATACCATCATTGATGGTATGGTCAAAGATGGCCTTTGGGATGTCTATAATAACTTTGGCATGGGTGCTTGTGCCGAACTATGTGCAGATCAGCATGTCATAACAAGAGATGAGCAGGATTCTTATGCCATTCGAAGCTTTGAGAGAGGAATATCTGCTCAAAATGCTGGTCATTTTGCTTGGGAGATAGTTCCGGTTGAAGTTTCCACTGGAAGAGGGAGGGCTTCCACAATTGTTGATAAAGATGAAGGTCTGGGGAAGTTTGATGCTGCAAAGTTAAGGAAGCTTAGACCAAGCTTTAAAGAGGTTGGGGGTTCTGTGACTGCTGGCAATGCTTCTAGCATAAGTGATGGTGCTGCTGCATTAGTGCTAGTGAGTGAAGAGAAGGCACGTGAGCTTGGATTGCATGTAATTGCAAAGATAAAAGGATATGGGGATGCAGCTAAGGCGCCTGAATTATTTACAACTGCTCCTTCCCTTGCAATACCAAAAGCTATATCAAATGCTGGTCTTGATGCTTCTCAAATTGATTATTATGAAATAAATGAAGCTTTTTCAGTTGTAGCTCTTGCAAATCAGAAGCTTCTTGCTCTTAATCCTGTGAGTGTTTAA

Predicted protein sequences of Glyma07g39870

Limit To All Plant Sequences

>Glyma07g39870.1   sequence type=predicted peptide   gene model=Glyma07g39870   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSTSAKSRDVCIVGVARTPIGGLLGTLSSLSATELGSIAIKSALERANVDPSLVQEVFFGNVLSANLGQAPARQAALGAGIPTSVICTTINKVCASGMKATMLAALTIQFGLNDVVVAGGMESMSNAPKYLAEARKGSRYGHDTIIDGMVKDGLWDVYNNFGMGACAELCADQHVITRDEQDSYAIRSFERGISAQNAGHFAWEIVPVEVSTGRGRASTIVDKDEGLGKFDAAKLRKLRPSFKEVGGSVTAGNASSISDGAAALVLVSEEKARELGLHVIAKIKGYGDAAKAPELFTTAPSLAIPKAISNAGLDASQIDYYEINEAFSVVALANQKLLALNPEKVNVYGGAVSLGHPLGCSGARILVTLLGVLRQKRGKYGVAAICNGGGGASALVLELMPVAVGRSLL*

>Glyma07g39870.2   sequence type=predicted peptide   gene model=Glyma07g39870   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSTSAKSRDVCIVGVARTPIGGLLGTLSSLSATELGSIAIKSALERANVDPSLVQEVFFGNVLSANLGQAPARQAALGAGIPTSVICTTINKVCASGMKATMLAALTIQFGLNDVVVAGGMESMSNAPKYLAEARKGSRYGHDTIIDGMVKDGLWDVYNNFGMGACAELCADQHVITRDEQDSYAIRSFERGISAQNAGHFAWEIVPVEVSTGRGRASTIVDKDEGLGKFDAAKLRKLRPSFKEVGGSVTAGNASSISDGAAALVLVSEEKARELGLHVIAKIKGYGDAAKAPELFTTAPSLAIPKAISNAGLDASQIDYYEINEAFSVVALANQKLLALNPVSV*

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