Glyma07g39820 - SoyBase

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Report for Sequence Feature Glyma07g39820

Feature Type:	gene_model
Chromosome:	Gm07
Start:	44184210
stop:	44186882
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma07g39820

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G47670	AT	Annotation by Michelle Graham. TAIR10: nuclear factor Y, subunit B6 \| chr5:19315061-19315975 FORWARD LENGTH=234	SoyBase	E_val: 4.00E-75	ISS
GO:0006355	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of transcription, DNA-dependent	SoyBase	N/A	ISS
GO:0009738	GO-bp	Annotation by Michelle Graham. GO Biological Process: abscisic acid mediated signaling pathway	SoyBase	N/A	ISS
GO:0045893	GO-bp	Annotation by Michelle Graham. GO Biological Process: positive regulation of transcription, DNA-dependent	SoyBase	N/A	ISS
GO:0005622	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: intracellular	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0003677	GO-mf	Annotation by Michelle Graham. GO Molecular Function: DNA binding	SoyBase	N/A	ISS
GO:0003700	GO-mf	Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding transcription factor activity	SoyBase	N/A	ISS
GO:0005515	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein binding	SoyBase	N/A	ISS
GO:0033613	GO-mf	Annotation by Michelle Graham. GO Molecular Function: activating transcription factor binding	SoyBase	N/A	ISS
GO:0043565	GO-mf	Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding	SoyBase	N/A	ISS
KOG0869	KOG	CCAAT-binding factor, subunit A (HAP3)	JGI		ISS
PTHR11064	Panther	TATA-BINDING PROTEIN-ASSOCIATED PHOSPHOPROTEIN	JGI		ISS
PTHR11064:SF9	Panther	CCAAT-BINDING TRANSCRIPTION FACTOR SUBUNIT A	JGI		ISS
PF00808	PFAM	Histone-like transcription factor (CBF/NF-Y) and archaeal histone	JGI		ISS
UniRef100_B5KMS8	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Transcription factor LEC1-A n=1 Tax=Glycine max RepID=B5KMS8_SOYBN	SoyBase	E_val: 6.00E-168	ISS
UniRef100_B5KMS8	UniRef	Annotation by Michelle Graham. Best UniRef hit: Transcription factor LEC1-A n=1 Tax=Glycine max RepID=B5KMS8_SOYBN	SoyBase	E_val: 6.00E-168	ISS

Expression Patterns of Glyma07g39820

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma07g39820

Paralog	Evidence	Comments
Glyma17g00950	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma07g39820 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.07g268100	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma07g39820

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma07g39820

Limit To All Plant Sequences

>Glyma07g39820.1   sequence type=CDS   gene model=Glyma07g39820   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAAACTGGAGGCTTTCATGGCTACCGCAAGCTCCCCAACACAACCTCTGGGTTGAAGCTGTCAGTGTCAGACATGAACATGAACATGAGGCAGCAGCAGGTAGCATCATCAGATCAGAACTGCAGCAACCACAGTGCAGCAGGAGAGGAGAACGAATGCACGGTGAGGGAGCAAGACAGGTTCATGCCAATCGCTAACGTGATACGGATCATGCGCAAGATTCTCCCTCCACACGCAAAAATCTCCGATGATGCAAAGGAGACAATCCAAGAGTGCGTGTCGGAGTACATCAGCTTCATCACCGGGGAGGCCAACGAGCGTTGCCAGAGGGAGCAGCGCAAGACCATAACCGCAGAGGACGTGCTTTGGGCAATGAGTAAGCTTGGATTCGACGACTACATCGAACCGTTAACCATGTACCTTCACCGCTACCGTGAGCTGGAGGGTGACCGCACCTCTATGAGGGGTGAACCGCTCGGGAAGAGGACTGTGGAATATGCCACGCTTGCTACTGCTTTTGTGCCGCCACCCTTTCATCACCACAATGGCTACTTTGGTGCTGCCATGCCCATGGGGACTTACGTTAGGGAAACGCCACCAAATGCTGCGTCATCTCATCACCATCATGGAATCTCCAATGCTCATGAACCAAATGCTCGCTCCATATAA

Predicted protein sequences of Glyma07g39820

Limit To All Plant Sequences

>Glyma07g39820.1   sequence type=predicted peptide   gene model=Glyma07g39820   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
METGGFHGYRKLPNTTSGLKLSVSDMNMNMRQQQVASSDQNCSNHSAAGEENECTVREQDRFMPIANVIRIMRKILPPHAKISDDAKETIQECVSEYISFITGEANERCQREQRKTITAEDVLWAMSKLGFDDYIEPLTMYLHRYRELEGDRTSMRGEPLGKRTVEYATLATAFVPPPFHHHNGYFGAAMPMGTYVRETPPNAASSHHHHGISNAHEPNARSI*

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