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Report for Sequence Feature Glyma07g39793

Feature Type:gene_model
Chromosome:Gm07
Start:44169567
stop:44172607
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma07g39793
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT4G16360AT Annotation by Michelle Graham. TAIR10: 5'-AMP-activated protein kinase beta-2 subunit protein | chr4:9245571-9246833 FORWARD LENGTH=261 SoyBaseE_val: 3.00E-95ISS
GO:0006499GO-bp Annotation by Michelle Graham. GO Biological Process: N-terminal protein myristoylation SoyBaseN/AISS
GO:0005737GO-cc Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm SoyBaseN/AISS
GO:0004679GO-mf Annotation by Michelle Graham. GO Molecular Function: AMP-activated protein kinase activity SoyBaseN/AISS
GO:0005515GO-mf Annotation by Michelle Graham. GO Molecular Function: protein binding SoyBaseN/AISS
KOG1616 KOG Protein involved in Snf1 protein kinase complex assembly JGI ISS
PTHR10343Panther 5'-AMP-ACTIVATED PROTEIN KINASE , BETA SUBUNIT JGI ISS
PTHR10343:SF10Panther 5-AMP-ACTIVATED PROTEIN KINASE , BETA SUBUNIT JGI ISS
PF04739PFAM 5'-AMP-activated protein kinase beta subunit, interation domain JGI ISS
UniRef100_Q7XYX7UniRef Annotation by Michelle Graham. Most informative UniRef hit: AKIN beta2 n=1 Tax=Medicago truncatula RepID=Q7XYX7_MEDTR SoyBaseE_val: 1.00E-107ISS
UniRef100_UPI0002339065UniRef Annotation by Michelle Graham. Best UniRef hit: UPI0002339065 related cluster n=1 Tax=unknown RepID=UPI0002339065 SoyBaseE_val: 5.00E-132ISS

Expression Patterns of Glyma07g39793
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma07g39793 not represented in the dataset
Glyma07g39793 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma07g39793
ParalogEvidenceComments
Glyma17g00990 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma07g39793 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.07g267900 Wm82.a2.v1IGC As supplied by JGI

References for Glyma07g39793
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma07g39793
>Glyma07g39793.1   sequence type=CDS   gene model=Glyma07g39793   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCCTCAGTCTCCTCCCACCACCCCTACGACTACCCATTCCCCCCTCTTATTCGCTCCTCAGGTTCCCGTGGTTCCGCTACAAAGACCTGATGACATTCATGTTCCAAGTTGTTCCTGGATGGAGACAACTTCAGGGTATGAAGATATGTACACTCAAGTAGGAATCCCAACAATGATTACTTGGAGTTATGATGGAAAGGAAGTAGCTGTCGAGGGATCGTGGGATAATTGGAAAACAAGAATGCCCCTGCAGAGATCAGGGAAGGACTTTGCCTTAATGAGGTACTTCCGTCTGGTGTTTACCAGTACAGATTTATTGTGGATGGACGCAAGAAGTACACTCCAGATTCGCCTTGGGCCCAAGATGATGCTGGGAATGCTTACAACATCTTGGACTTACAGTCCTGAAGACATTGGAAGCATCTCTAGTTTTGAGCCTCCTCAATCACCAGACTCAAGTTATGATAACTTACATCTTAGTTCTGAAGATTATGCTAAGGAGCCACCATTAGTTCCTCCACTCTTGCAAATGACACTGCTAAATGTGCCTGCAACAAATATGGAAATCCAACCTCCTATGTCAAGACCTCGACATGGAGTGCTGAATCATCTTTACACCCAGAAAGGAAAGAGCAGTCCTTCAGTGGCTGGCCTTGGTACAACTCATCGGTTTCTAGCCAAATATGTCACTGTGGTACTGTACAAGTCGTTGCAAAGTAAACCATAA
Predicted protein sequences of Glyma07g39793
>Glyma07g39793.1   sequence type=predicted peptide   gene model=Glyma07g39793   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MPQSPPTTPTTTHSPLLFAPQVPVVPLQRPDDIHVPSCSWMETTSGYEDMYTQVGIPTMITWSYDGKEVAVEGSWDNWKTRMPLQRSGKDFALMRYFRLVFTSTDLLWMDARSTLQIRLGPKMMLGMLTTSWTYSPEDIGSISSFEPPQSPDSSYDNLHLSSEDYAKEPPLVPPLLQMTLLNVPATNMEIQPPMSRPRHGVLNHLYTQKGKSSPSVAGLGTTHRFLAKYVTVVLYKSLQSKP*






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