Glyma07g39770 - SoyBase

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Report for Sequence Feature Glyma07g39770

Feature Type:	gene_model
Chromosome:	Gm07
Start:	44140858
stop:	44145922
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma07g39770

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G50740	AT	Annotation by Michelle Graham. TAIR10: Heavy metal transport/detoxification superfamily protein \| chr5:20635983-20637847 REVERSE LENGTH=283	SoyBase	E_val: 8.00E-62	ISS
GO:0030001	GO-bp	Annotation by Michelle Graham. GO Biological Process: metal ion transport	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0005737	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm	SoyBase	N/A	ISS
GO:0005886	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane	SoyBase	N/A	ISS
GO:0046872	GO-mf	Annotation by Michelle Graham. GO Molecular Function: metal ion binding	SoyBase	N/A	ISS
KOG1603	KOG	Copper chaperone	JGI		ISS
PTHR22814	Panther	COPPER TRANSPORT PROTEIN ATOX1-RELATED	JGI		ISS
PTHR22814:SF52	Panther	SUBFAMILY NOT NAMED	JGI		ISS
PF00403	PFAM	Heavy-metal-associated domain	JGI		ISS
UniRef100_B9RAC5	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Metal ion binding protein, putative n=1 Tax=Ricinus communis RepID=B9RAC5_RICCO	SoyBase	E_val: 2.00E-61	ISS
UniRef100_I1KNK9	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1KNK9_SOYBN	SoyBase	E_val: 2.00E-174	ISS

Expression Patterns of Glyma07g39770

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma07g39770

Paralog	Evidence	Comments
Glyma17g01010	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma07g39770 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.07g267700	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma07g39770

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma07g39770

Limit To All Plant Sequences

>Glyma07g39770.2   sequence type=transcript   gene model=Glyma07g39770   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
CACAATTCAGTAATAAACATACATGATGTGAGTATAATGTATTCAATCATGTTTTATCGGTGCGCTACCTGCATCTGCATGGTAGTTCACCCTGGCCAAACCGAAAAATGAGTTAATAAGTAAAAATATGTTTTTTTTTTATAAAAAAACTTTCCGGTAGATTGTGCAGGAAAGTGTCCACGTCAGATTTGCAGAATCCCTACACGTTAAATTTTCTCCTCCGGGGGAGTGTGTGCGTGTTGCCTTCTGTTGTGTTGTGTGTGCATAAACAAAACAAAAACAAAGAGCGTTTCAATTGCTATCTCCCACAAACATCTTTAGTTAAGATCTGCGTTAACCACTAAGATCTCTGAAGCAGAGGGCATTGTCTACTGTCACAGGCATGGGTGAAAAAGACGAAGGAAACAAAGAAGAAGCCAAGGAGGAAAAGAAGGAAGAAGAGAAGAAGGAGGAGCCACCACCGGAGATAGTGCTCAAAGTTGATATGCATTGTGAGGCCTGTGCAAGGAAAGTTGCAAAAGCATTGAAAGGATTCCAAGGAGTGGAAGAGGTGAGTGCGGATAGCAGGACAAGCAAAGTGGTAGTGAAAGGAAAGGCAGCTGACCCCATAAAGGTGTGTGAGAGGCTACAAAAGAAAAGTGGTAAGAAAGTGGAGCTAATTTCACCCTTGCCAAAACCTCCAGAGGAGAAAAAAGAAGAAACCAAAGAAGAACCACCCAAAGAGGAGAAAAAAGATGAGCCTCCTCCTGTGGTAACAGTTGTCCTTAAAGTTCGAATGCATTGTGAACCATGTGCTCAAGTTATCCAGAAGCGAATCCGCAAGATTAAGGGAGTAGAATCAGTGGAAACAGACTTGGCAAATGATCAAGTTATAGTAAAAGGTGTTGTCGACCCTGCCAAGCTTGTTGATCATGTCTACAAGAGGACCAAAAAGCAAGCCTCTATTGTGAAGGACGAAGAAAAGAAGGAAGAAGAAAAGAAAGAAGAAGAGAAAAGGGAAGAGAAAGAAGAAGAGAAAAAAGAAGGTGAAGAAGATAACAAAACTGAAATCAAACGAAGTGAATACTGGCCATCCAAGAACTACATCGACTATGCTTATGACCCCGAGATTTTCAGCGACGAGAACCCGAATGCCTGCTCTGTTATGTAAACCAGCAAGTAATTCCGTATTTCAGTTGGAACGGTAATTAGCTGAAGTAGTTTTCATTTCAATGCTTTTCTAATTATATCTAGCAGTGTGAGTATGTTAAGGGTATATTCGTTCCTTTCCATAGCGTCCCTCAAAGATAGATGTCTTATTTCTTGTGCTTTTGAGGTTTCAAGTAGTGTATATCCGTTGCCAAAGGGTAGGTAGAGTTGCTTCAGTTTGTGTAAGTGTTAACATGCTTCACTGAATTTTGGCCTAAAATCTCTTTGCCCATGAATGTTGACGTTGAAATTTGCATGCAATGGTCTCTCTTTAAGAATTTTCTGAAATAGTCATGGTTCCCTCTAGCGAGTACCTGTGTTTACAATA

Coding sequences of Glyma07g39770

Limit To All Plant Sequences

>Glyma07g39770.1   sequence type=CDS   gene model=Glyma07g39770   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGTGAAGAAAAGAAAGACGAAGGAAACAAAGAAGAAGCCAAGGAGGAAAAGAAGGAAGAAGAGAAGAAGGAGGAGCCACCACCGGAGATAGTGCTCAAAGTTGATATGCATTGTGAGGCCTGTGCAAGGAAAGTTGCAAAAGCATTGAAAGGATTCCAAGGAGTGGAAGAGGTGAGTGCGGATAGCAGGACAAGCAAAGTGGTAGTGAAAGGAAAGGCAGCTGACCCCATAAAGGTGTGTGAGAGGCTACAAAAGAAAAGTGGTAAGAAAGTGGAGCTAATTTCACCCTTGCCAAAACCTCCAGAGGAGAAAAAAGAAGAAACCAAAGAAGAACCACCCAAAGAGGAGAAAAAAGATGAGCCTCCTCCTGTGGTAACAGTTGTCCTTAAAGTTCGAATGCATTGTGAACCATGTGCTCAAGTTATCCAGAAGCGAATCCGCAAGATTAAGGGAGTAGAATCAGTGGAAACAGACTTGGCAAATGATCAAGTTATAGTAAAAGGTGTTGTCGACCCTGCCAAGCTTGTTGATCATGTCTACAAGAGGACCAAAAAGCAAGCCTCTATTGTGAAGGACGAAGAAAAGAAGGAAGAAGAAAAGAAAGAAGAAGAGAAAAGGGAAGAGAAAGAAGAAGAGAAAAAAGAAGGTGAAGAAGATAACAAAACTGAAATCAAACGAAGTGAATACTGGCCATCCAAGAACTACATCGACTATGCTTATGACCCCGAGATTTTCAGCGACGAGAACCCGAATGCCTGCTCTGTTATGTAA

>Glyma07g39770.2   sequence type=CDS   gene model=Glyma07g39770   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGTGAAAAAGACGAAGGAAACAAAGAAGAAGCCAAGGAGGAAAAGAAGGAAGAAGAGAAGAAGGAGGAGCCACCACCGGAGATAGTGCTCAAAGTTGATATGCATTGTGAGGCCTGTGCAAGGAAAGTTGCAAAAGCATTGAAAGGATTCCAAGGAGTGGAAGAGGTGAGTGCGGATAGCAGGACAAGCAAAGTGGTAGTGAAAGGAAAGGCAGCTGACCCCATAAAGGTGTGTGAGAGGCTACAAAAGAAAAGTGGTAAGAAAGTGGAGCTAATTTCACCCTTGCCAAAACCTCCAGAGGAGAAAAAAGAAGAAACCAAAGAAGAACCACCCAAAGAGGAGAAAAAAGATGAGCCTCCTCCTGTGGTAACAGTTGTCCTTAAAGTTCGAATGCATTGTGAACCATGTGCTCAAGTTATCCAGAAGCGAATCCGCAAGATTAAGGGAGTAGAATCAGTGGAAACAGACTTGGCAAATGATCAAGTTATAGTAAAAGGTGTTGTCGACCCTGCCAAGCTTGTTGATCATGTCTACAAGAGGACCAAAAAGCAAGCCTCTATTGTGAAGGACGAAGAAAAGAAGGAAGAAGAAAAGAAAGAAGAAGAGAAAAGGGAAGAGAAAGAAGAAGAGAAAAAAGAAGGTGAAGAAGATAACAAAACTGAAATCAAACGAAGTGAATACTGGCCATCCAAGAACTACATCGACTATGCTTATGACCCCGAGATTTTCAGCGACGAGAACCCGAATGCCTGCTCTGTTATGTAA

Predicted protein sequences of Glyma07g39770

Limit To All Plant Sequences

>Glyma07g39770.1   sequence type=predicted peptide   gene model=Glyma07g39770   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGEEKKDEGNKEEAKEEKKEEEKKEEPPPEIVLKVDMHCEACARKVAKALKGFQGVEEVSADSRTSKVVVKGKAADPIKVCERLQKKSGKKVELISPLPKPPEEKKEETKEEPPKEEKKDEPPPVVTVVLKVRMHCEPCAQVIQKRIRKIKGVESVETDLANDQVIVKGVVDPAKLVDHVYKRTKKQASIVKDEEKKEEEKKEEEKREEKEEEKKEGEEDNKTEIKRSEYWPSKNYIDYAYDPEIFSDENPNACSVM*

>Glyma07g39770.2   sequence type=predicted peptide   gene model=Glyma07g39770   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGEKDEGNKEEAKEEKKEEEKKEEPPPEIVLKVDMHCEACARKVAKALKGFQGVEEVSADSRTSKVVVKGKAADPIKVCERLQKKSGKKVELISPLPKPPEEKKEETKEEPPKEEKKDEPPPVVTVVLKVRMHCEPCAQVIQKRIRKIKGVESVETDLANDQVIVKGVVDPAKLVDHVYKRTKKQASIVKDEEKKEEEKKEEEKREEKEEEKKEGEEDNKTEIKRSEYWPSKNYIDYAYDPEIFSDENPNACSVM*

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