Report for Sequence Feature Glyma07g39750
Feature Type: gene_model
Chromosome: Gm07
Start: 44128807
stop: 44131206
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma07g39750
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT4G16390 AT
Annotation by Michelle Graham. TAIR10: pentatricopeptide (PPR) repeat-containing protein | chr4:9257985-9260093 FORWARD LENGTH=702
SoyBase E_val: 0 ISS
GO:0009658 GO-bp
Annotation by Michelle Graham. GO Biological Process: chloroplast organization
SoyBase N/A ISS
GO:0031425 GO-bp
Annotation by Michelle Graham. GO Biological Process: chloroplast RNA processing
SoyBase N/A ISS
GO:0045036 GO-bp
Annotation by Michelle Graham. GO Biological Process: protein targeting to chloroplast
SoyBase N/A ISS
GO:0045727 GO-bp
Annotation by Michelle Graham. GO Biological Process: positive regulation of translation
SoyBase N/A ISS
GO:0009507 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: chloroplast
SoyBase N/A ISS
GO:0009570 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: chloroplast stroma
SoyBase N/A ISS
PTHR24015 Panther
FAMILY NOT NAMED
JGI ISS
PF01535 PFAM
PPR repeat
JGI ISS
UniRef100_G7JMV3 UniRef
Annotation by Michelle Graham. Most informative UniRef hit: Pentatricopeptide repeat-containing protein n=1 Tax=Medicago truncatula RepID=G7JMV3_MEDTR
SoyBase E_val: 0 ISS
UniRef100_I1KNK8 UniRef
Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1KNK8_SOYBN
SoyBase E_val: 0 ISS
Expression Patterns of Glyma07g39750
Gene expression representations made with eFP at the University of Toronto. Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE Paralogs of Glyma07g39750
Paralog Evidence Comments
Glyma17g01050 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.
Gene model name correspondences to Glyma07g39750 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
Glyma.07g267500 Wm82.a2.v1 IGC As supplied by JGI
References for Glyma07g39750
Coding sequences of Glyma07g39750
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma07g39750.1 sequence type=CDS gene model=Glyma07g39750 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGGCTTACAATCTTTGCTCTTCCCCTTCCTCTCTCTTCCATGACCTTCCCTCCATTTCTTCTTCTTCTTCTTCCCGCAAATTCAAACTTCGAAACTTGTCCTCTTCTTCTCTCACTCCTCATTCCAAAACCCTTCTCCATGTCTCCTTGCACGAACACGAACCCATTCCCGAACACCTACCACCCGACGCAAAATCCTCGTCTTCGTCGAAAAGTAATTACATCTGGGTCAACCCCCGAAGCCCCAGGGCCAAACAACTCGAGAGTAGATCCTACGATGCCAGGTACACTTCTCTTGTAAATCTCGCCCACTCCTTGGACTCTTGCAATCCCTCTCAAGAGGACGTCTCTCTAGTTTTGAAGGACTTAGGGGATAGGGTTATAGAGCAAGACGCTGTAATTGTCATCAACAACATGTCCAATTCCCGTGTTGTACCCTTTGTTCTCAATTACTTTCAGCGTAGGATTAGACCCACCAGAGAGGTCATTCTCTACAACGTCACCCTCAAGGTGTTTAGGAAGAGCAAGGATTTGGATGCAATGGAGAAGCTGTTTGATGAAATGCTCCAGAGAGGGGTGAGGCCTGACAATGTCACTTTCTCCACTATAATTAGCTGTGCTAGGATTTGTTCTTTACCCAATAAGGCCGTGGAGTGGTTTGAAAAGATGTCATCATTCGGGTGTGAGCCTGATGATGTTACCTACTCGGCTATGATTGATGCTTATGGCAGGGCTGGTAATATTGACATGGCTTTGCGCCTGTATGATCGTGCCAGGACCGAGAAGTGGCGACTTGATACCGTTACCTTCTCCACCCTGATTAAGATGTATGGTTTGGCGGGTAATTATGATGGATGCTTGAATGTCTACCAAGAGATGAAGGTTCTTGGTGTTAAGCCTAACATGGTTATTTATAACACTCTGTTGGATGCCATGGGGAGAGCTAAGAGGCCCTGGCAGGCCAAGAGCATATATACGGAGATGACTAATAATGGATTTTCACCGAATTGGGTGACTTACGCGTCTCTCTTAAGGGCCTATGGTAGAGGACGCTACAGCGAAGATGCTCTCTTTGTTTATAAGGAAATGAAGGAAAAGGGAATGGAGATGAACACTCATCTTTATAATACTCTTCTGGCCATGTGTGCAGATCTAGGCCTAGCCAATGAAGCATTTGAGATTTTTGAAGACATGAAAACTTCCGCAACTTGCCTCTGTGACAGTTGGACGTTCTCATCCTTGATTACCATATATTCCTGCACTGGGAATGTTTCGGAAGCTGAAAGAATGTTGAATGAAATGATTGAGTCTGGCTCTCAGCCTACTATTTTTGTTCTGACATCACTTGTCCAGTGCTATGGGAAGGTTGGGCGTACTGATGATGTTGTGAAAACATTTAATCAACTCTTGGATTTGGGCATCAGTCCAGACGACCGTTTCTGTGGTTGTCTTCTGAATGTTATGACCCAAACACCAAAAGAAGAGCTTGGTAAGCTAAACGATTGTGTGAAGAAGGCTAATCCAAAGCTTGGGTCCGTGGTAAGATATTTGGTGGAAGGGCTGGAGGAGGGTGGTGGGGAGTTTAAGAAAGAAGCATCTGAACTCTTTAATTCAATTGCTGATGAAGTAAAGAAGCCCTTTTGCAATTCTCTGATTGATCTTTGTGTCAACCTGAATTTGTTGGACAAAGCATGTGAGCTTCTAGACCTGGGGTTGACCCTTGAAATATATACGGATGTACAGTCCAAGTCTCAAACTCAGTGGTCTCTACATCTAAAGAGTCTCTCGCTTGGAGCTTCGCTGACTGCATTACATGCTTGGATAAATGACTTGTCCAAGACTTTGGAATCAGGAGAGGATCTTCCACCGCTGCTTGGAATTAATACTGGTCATGGGAAACACAGGTATTCGGACAAAGGTTTGGCAAGTGTAGTTGAATCACATTTGAACGAACTCAATGCTCCATTCCATGAGGCTCCGGATAAGGCTGGCTGGTTTTTGACTACACAGGTAGCAGCCAAGTCATGGCTGGAGTCTCGGGAATTGGTAACAGCATAA
Predicted protein sequences of Glyma07g39750
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma07g39750.1 sequence type=predicted peptide gene model=Glyma07g39750 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MAYNLCSSPSSLFHDLPSISSSSSSRKFKLRNLSSSSLTPHSKTLLHVSLHEHEPIPEHLPPDAKSSSSSKSNYIWVNPRSPRAKQLESRSYDARYTSLVNLAHSLDSCNPSQEDVSLVLKDLGDRVIEQDAVIVINNMSNSRVVPFVLNYFQRRIRPTREVILYNVTLKVFRKSKDLDAMEKLFDEMLQRGVRPDNVTFSTIISCARICSLPNKAVEWFEKMSSFGCEPDDVTYSAMIDAYGRAGNIDMALRLYDRARTEKWRLDTVTFSTLIKMYGLAGNYDGCLNVYQEMKVLGVKPNMVIYNTLLDAMGRAKRPWQAKSIYTEMTNNGFSPNWVTYASLLRAYGRGRYSEDALFVYKEMKEKGMEMNTHLYNTLLAMCADLGLANEAFEIFEDMKTSATCLCDSWTFSSLITIYSCTGNVSEAERMLNEMIESGSQPTIFVLTSLVQCYGKVGRTDDVVKTFNQLLDLGISPDDRFCGCLLNVMTQTPKEELGKLNDCVKKANPKLGSVVRYLVEGLEEGGGEFKKEASELFNSIADEVKKPFCNSLIDLCVNLNLLDKACELLDLGLTLEIYTDVQSKSQTQWSLHLKSLSLGASLTALHAWINDLSKTLESGEDLPPLLGINTGHGKHRYSDKGLASVVESHLNELNAPFHEAPDKAGWFLTTQVAAKSWLESRELVTA*
SoyBase
SoyBase transitions to NEW site on 10/1/2024
