SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT4G17220 | AT | Annotation by Michelle Graham. TAIR10: microtubule-associated proteins 70-5 | chr4:9657008-9659405 REVERSE LENGTH=513 | SoyBase | E_val: 1.00E-167 | ISS |
| GO:0007010 | GO-bp | Annotation by Michelle Graham. GO Biological Process: cytoskeleton organization | SoyBase | N/A | ISS |
| GO:0009832 | GO-bp | Annotation by Michelle Graham. GO Biological Process: plant-type cell wall biogenesis | SoyBase | N/A | ISS |
| GO:0010051 | GO-bp | Annotation by Michelle Graham. GO Biological Process: xylem and phloem pattern formation | SoyBase | N/A | ISS |
| GO:0010413 | GO-bp | Annotation by Michelle Graham. GO Biological Process: glucuronoxylan metabolic process | SoyBase | N/A | ISS |
| GO:0045492 | GO-bp | Annotation by Michelle Graham. GO Biological Process: xylan biosynthetic process | SoyBase | N/A | ISS |
| GO:0005737 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm | SoyBase | N/A | ISS |
| GO:0005874 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: microtubule | SoyBase | N/A | ISS |
| GO:0008017 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: microtubule binding | SoyBase | N/A | ISS |
| PF07058 | PFAM | Myosin II heavy chain-like | JGI | ISS | |
| UniRef100_B9SA68 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Myosin heavy chain, clone, putative n=1 Tax=Ricinus communis RepID=B9SA68_RICCO | SoyBase | E_val: 0 | ISS |
| UniRef100_UPI0002339064 | UniRef | Annotation by Michelle Graham. Best UniRef hit: UPI0002339064 related cluster n=1 Tax=unknown RepID=UPI0002339064 | SoyBase | E_val: 0 | ISS |
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Glyma07g39741 not represented in the dataset |
Glyma07g39741 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma17g01060 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.07g267400 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma07g39741.2 sequence type=transcript gene model=Glyma07g39741 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATTTGCTTCACCAAAGGAGAAGGGTCAATTCCTTATACGAAACGAATACAATCTTTCATTCTCTGCCTTTGAATATCTCTCTAATTATTATATATGCTTTCATGAGAGCCTCCATTTGTTGTTGATGCTTTTGGACTCATCCTACTTTGTCATGTAGTAGCACCTAAAAAGGAAAGGAACCGAACCAATTCCAAAGCGTCGTGTAGAGATATAAGCCACTGGGTCCTCCTCCCATCTGTTTGCATTTCCCAACGCCAAAGGAGAAATGGTGAGCTGTGAAGACCAATATGGAGAAAAGCTTCCACTTGTCCAACCAGACCCGGTGGTGTTGGAGATTAATCGTTTGCAAAACCAACTAAAAGAAAAAGAAAAGGAACTAGCGACTTGTCAGGGTGAAATCAAAGCTTTAAGGTCAACTGAAGCTCTAAAGGATAAGGCCATAGAAGAGTTGAGAAATGGAGTCAGTAAACTGGACGAAAGACTTAGAATTACAGAGGATCATCTTAAACAAAAGAATCTAGAAATCAAGAAACTGACAGATGAAAAGAAAAATGCATTGGCTTCGCAATATGCTGCAGAAGCAACACTTAGAAGGGTACATGCAAATCAAAAGGATGAAGATTTTGTTCCAATTGAGAGAGCCATTGCTCCTCTTGAAGCTGAGATCAAAATGTATAAGAATGAGATCACTGCACTTCAAGAAGATAAGAAAGCTTTGGAACGACTCACAAAATTGAAAGAGTCAGCATTGCTAGAAGCAGAGAGGATTCTGAGAAGTGCTCTAGATAGGGCTCTAGTTGTTGAGGAGGTTCGAAATCAGAACATTGACTTGAAGAGACAGATTGAGATCTGCCAGGAGGAGAACAAACTCTTAGAGAAAAACCATCGTCAAAAGATTTTGGAAGTTGAAAAGCTTAGTCAAACCATTCAAGAACTTGAGGAAGTCATCTTAGCTAGTGGAGCTACTGCTAATGCTGTTCGTGATTATCAGCAACAGATTTCTGAATTGCAAGAAGAGAAGAGGACATTAGAGAGGGAGCTAGCAAGGGTAAAAGTTTCAACCAACAGAATTGCAAATGCCGTGGCTAATGAGTGGAAGGACGAAAATCATAAGGTCATGCCTGTCAGGCAATGGCTGGAAGAAAGAAGGATTATGCAGGCAGAGATTCAACGGTTGAAAGACAAGCAAGCTATATCAGAGAGAACAGCTAAGGCAGAGTCCCAATTGAAGGATAAACTGAAGCTGAGGCTTAAAACACTGGAGGAAGGCTTAAAGCATTTCTCCAATAACCCAATCACTTCGAATGTGTCTTATGCATCTCAAAAAGCAGAAAAGTCTAACATACTAGGTTTCCTAACAACCAGTGCTGGACTGAGAAAGAGATCCACATCACAACCAAGGGCATGTACGGTTGGAAGCTCATTGTTCCAGACACCAAATATAAAAAACAACAGAGGAGACATCGTAGCTGGGAATTTGAAGCTGGGGAGCCCTACAAAAAAATATGGTTCTACAGAAAATATGTTAACGAAAGGGATATGGGCATCAAGAAGTAAAGTTGCTGATAATGGTGAAAAGGAAAATGAAATGCAGGTGAACAGAGACATGACTTTAAACAGATGCAATGATGAAAGTGAAGCAACAGAAATTAAAACCATTGTTGATGTGGAAGAAGACCCTCCTGAAAGCAAGAAACCAAAAGGTTCAAGCAGGGATGATGTGGTCTCAGGTTTTCTATATGATAAGCTGCAAAAAGAGGTCATCAATTTGAGGAAGTCTTGTGAAATTAAAGACAGTAGTTTACAAGCTAAAGATGAAGAAATTAAGATGCTTATAAAGAAAGTCGGTGTACTGACAAAGGCCATGGAAGTAGAGTGGAAGAAAATGAAAAGAGAGGCAGCTGCTAGAGAGAAGGAGGCTTCATCAACAAAGTCAGATGATAACAGGAAAAACAGAAGCGCAAACTCCTCTAAAAGGGCGATATAAATTTATTACATGGCGGTGAAAGAGCGCTGTGAATTCTTTATTTGGAGATAGTTGAAGACAATTTATTTATCAATGGCATCTTGTGTGATTTTTCTTTGTAAATACAAAACATTTGGTGAGGTAATATCCTGAAATAAATTTCCATTGGGGAAAGGAAGTTTGAGAATCAGTTTCCGTACAATCATTAGTGTTCAACATCTTCCTCTATATTTGGATAAATGACATGTTTTGTGATGTGAGTTTTACACACTAGCCAAGTTTGTCACATGCTTCAGGGACATGAAACATGAGGAACACTTGTGAAACTAGTGGTATAGTCCTCATTAAGTAGTAAAAGATTTAGTGCTTATTTGATTCCCTTCTCATTTTTTG
>Glyma07g39741.1 sequence type=CDS gene model=Glyma07g39741 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGTGAGCTGTGAAGACCAATATGGAGAAAAGCTTCCACTTGTCCAACCAGACCCGGTGGTGTTGGAGATTAATCGTTTGCAAAACCAACTAAAAGAAAAAGAAAAGGAACTAGCGACTTGTCAGGGTGAAATCAAAGCTTTAAGGTCAACTGAAGCTCTAAAGGATAAGGCCATAGAAGAGTTGAGAAATGGAGTCAGTAAACTGGACGAAAGACTTAGAATTACAGAGGATCATCTTAAACAAAAGAATCTAGAAATCAAGAAACTGACAGATGAAAAGAAAAATGCATTGGCTTCGCAATATGCTGCAGAAGCAACACTTAGAAGGGTACATGCAAATCAAAAGGATGAAGATTTTGTTCCAATTGAGAGAGCCATTGCTCCTCTTGAAGCTGAGATCAAAATGTATAAGAATGAGATCACTGCACTTCAAGAAGATAAGAAAGCTTTGGAACGACTCACAAAATTGAAAGAGTCAGCATTGCTAGAAGCAGAGAGGATTCTGAGAAGTGCTCTAGATAGGGCTCTAGTTGTTGAGGAGGTTCGAAATCAGAACATTGACTTGAAGAGACAGATTGAGATCTGCCAGGAGGAGAACAAACTCTTAGAGAAAAACCATCGTCAAAAGATTTTGGAAGTTGAAAAGCTTAGTCAAACCATTCAAGAACTTGAGGAAGTCATCTTAGCTAGTGGAGCTACTGCTAATGCTGTTCGTGATTATCAGCAACAGATTTCTGAATTGCAAGAAGAGAAGAGGACATTAGAGAGGGAGCTAGCAAGGGTAAAAGTTTCAACCAACAGAATTGCAAATGCCGTGGCTAATGAGTGGAAGGACGAAAATCATAAGGTCATGCCTGTCAGGCAATGGCTGGAAGAAAGAAGGATTATGCAGGCAGAGATTCAACGGTTGAAAGACAAGCAAGCTATATCAGAGAGAACAGCTAAGGCAGAGTCCCAATTGAAGGATAAACTGAAGCTGAGGCTTAAAACACTGGAGGAAGGCTTAAAGCATTTCTCCAATAACCCAATCACTTCGAATGTGTCTTATGCATCTCAAAAAGCAGAAAAGTCTAACATACTAGGTTTCCTAACAACCAGTGCTGGACTGAGAAAGAGATCCACATCACAACCAAGGGCATGTACGGTTGGAAGCTCATTGTTCCAGACACCAAATATAAAAAACAACAGAGGAGACATCGTAGCTGGGAATTTGAAGCTGGGGAGCCCTACAAAAAAATATGGTTCTACAGAAAATATGTTAACGAAAGGGATATGGGCATCAAGAAGTAAAGTTGCTGATAATGGTGAAAAGGAAAATGAAATGCAGGTGAACAGAGACATGACTTTAAACAGATGCAATGATGAAAGTGAAGCAACAGAAATTAAAACCATTGTTGATGTGGAAGAAGACCCTCCTGAAAGCAAGAAACCAAAAGGTTCAAGCAGGGATGATGTGGTCTCAGGTTTTCTATATGATAAGCTGCAAAAAGAGGTCATCAATTTGAGGAAGTCTTGTGAAATTAAAGACAGTAGTTTACAAGCTAAAGATGAAGAAATTAAGATGCTTATAAAGAAAGTCGGTGTACTGACAAAGGCCATGGAAGTAGAGTGGAAGAAAATGAAAAGAGAGGCAGCTGCTAGAGAGAAGGAGGCTTCATCAACAAAGTCAGATGATAACAGGAAAAACAGAAGCGCAAACTCCTCTAAAAGGGCGATATAA >Glyma07g39741.2 sequence type=CDS gene model=Glyma07g39741 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGTGAGCTGTGAAGACCAATATGGAGAAAAGCTTCCACTTGTCCAACCAGACCCGGTGGTGTTGGAGATTAATCGTTTGCAAAACCAACTAAAAGAAAAAGAAAAGGAACTAGCGACTTGTCAGGGTGAAATCAAAGCTTTAAGGTCAACTGAAGCTCTAAAGGATAAGGCCATAGAAGAGTTGAGAAATGGAGTCAGTAAACTGGACGAAAGACTTAGAATTACAGAGGATCATCTTAAACAAAAGAATCTAGAAATCAAGAAACTGACAGATGAAAAGAAAAATGCATTGGCTTCGCAATATGCTGCAGAAGCAACACTTAGAAGGGTACATGCAAATCAAAAGGATGAAGATTTTGTTCCAATTGAGAGAGCCATTGCTCCTCTTGAAGCTGAGATCAAAATGTATAAGAATGAGATCACTGCACTTCAAGAAGATAAGAAAGCTTTGGAACGACTCACAAAATTGAAAGAGTCAGCATTGCTAGAAGCAGAGAGGATTCTGAGAAGTGCTCTAGATAGGGCTCTAGTTGTTGAGGAGGTTCGAAATCAGAACATTGACTTGAAGAGACAGATTGAGATCTGCCAGGAGGAGAACAAACTCTTAGAGAAAAACCATCGTCAAAAGATTTTGGAAGTTGAAAAGCTTAGTCAAACCATTCAAGAACTTGAGGAAGTCATCTTAGCTAGTGGAGCTACTGCTAATGCTGTTCGTGATTATCAGCAACAGATTTCTGAATTGCAAGAAGAGAAGAGGACATTAGAGAGGGAGCTAGCAAGGGTAAAAGTTTCAACCAACAGAATTGCAAATGCCGTGGCTAATGAGTGGAAGGACGAAAATCATAAGGTCATGCCTGTCAGGCAATGGCTGGAAGAAAGAAGGATTATGCAGGCAGAGATTCAACGGTTGAAAGACAAGCAAGCTATATCAGAGAGAACAGCTAAGGCAGAGTCCCAATTGAAGGATAAACTGAAGCTGAGGCTTAAAACACTGGAGGAAGGCTTAAAGCATTTCTCCAATAACCCAATCACTTCGAATGTGTCTTATGCATCTCAAAAAGCAGAAAAGTCTAACATACTAGGTTTCCTAACAACCAGTGCTGGACTGAGAAAGAGATCCACATCACAACCAAGGGCATGTACGGTTGGAAGCTCATTGTTCCAGACACCAAATATAAAAAACAACAGAGGAGACATCGTAGCTGGGAATTTGAAGCTGGGGAGCCCTACAAAAAAATATGGTTCTACAGAAAATATGTTAACGAAAGGGATATGGGCATCAAGAAGTAAAGTTGCTGATAATGGTGAAAAGGAAAATGAAATGCAGGTGAACAGAGACATGACTTTAAACAGATGCAATGATGAAAGTGAAGCAACAGAAATTAAAACCATTGTTGATGTGGAAGAAGACCCTCCTGAAAGCAAGAAACCAAAAGGTTCAAGCAGGGATGATGTGGTCTCAGGTTTTCTATATGATAAGCTGCAAAAAGAGGTCATCAATTTGAGGAAGTCTTGTGAAATTAAAGACAGTAGTTTACAAGCTAAAGATGAAGAAATTAAGATGCTTATAAAGAAAGTCGGTGTACTGACAAAGGCCATGGAAGTAGAGTGGAAGAAAATGAAAAGAGAGGCAGCTGCTAGAGAGAAGGAGGCTTCATCAACAAAGTCAGATGATAACAGGAAAAACAGAAGCGCAAACTCCTCTAAAAGGGCGATATAA
>Glyma07g39741.1 sequence type=predicted peptide gene model=Glyma07g39741 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MVSCEDQYGEKLPLVQPDPVVLEINRLQNQLKEKEKELATCQGEIKALRSTEALKDKAIEELRNGVSKLDERLRITEDHLKQKNLEIKKLTDEKKNALASQYAAEATLRRVHANQKDEDFVPIERAIAPLEAEIKMYKNEITALQEDKKALERLTKLKESALLEAERILRSALDRALVVEEVRNQNIDLKRQIEICQEENKLLEKNHRQKILEVEKLSQTIQELEEVILASGATANAVRDYQQQISELQEEKRTLERELARVKVSTNRIANAVANEWKDENHKVMPVRQWLEERRIMQAEIQRLKDKQAISERTAKAESQLKDKLKLRLKTLEEGLKHFSNNPITSNVSYASQKAEKSNILGFLTTSAGLRKRSTSQPRACTVGSSLFQTPNIKNNRGDIVAGNLKLGSPTKKYGSTENMLTKGIWASRSKVADNGEKENEMQVNRDMTLNRCNDESEATEIKTIVDVEEDPPESKKPKGSSRDDVVSGFLYDKLQKEVINLRKSCEIKDSSLQAKDEEIKMLIKKVGVLTKAMEVEWKKMKREAAAREKEASSTKSDDNRKNRSANSSKRAI* >Glyma07g39741.2 sequence type=predicted peptide gene model=Glyma07g39741 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MVSCEDQYGEKLPLVQPDPVVLEINRLQNQLKEKEKELATCQGEIKALRSTEALKDKAIEELRNGVSKLDERLRITEDHLKQKNLEIKKLTDEKKNALASQYAAEATLRRVHANQKDEDFVPIERAIAPLEAEIKMYKNEITALQEDKKALERLTKLKESALLEAERILRSALDRALVVEEVRNQNIDLKRQIEICQEENKLLEKNHRQKILEVEKLSQTIQELEEVILASGATANAVRDYQQQISELQEEKRTLERELARVKVSTNRIANAVANEWKDENHKVMPVRQWLEERRIMQAEIQRLKDKQAISERTAKAESQLKDKLKLRLKTLEEGLKHFSNNPITSNVSYASQKAEKSNILGFLTTSAGLRKRSTSQPRACTVGSSLFQTPNIKNNRGDIVAGNLKLGSPTKKYGSTENMLTKGIWASRSKVADNGEKENEMQVNRDMTLNRCNDESEATEIKTIVDVEEDPPESKKPKGSSRDDVVSGFLYDKLQKEVINLRKSCEIKDSSLQAKDEEIKMLIKKVGVLTKAMEVEWKKMKREAAAREKEASSTKSDDNRKNRSANSSKRAI*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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