SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT4G16440 | AT | Annotation by Michelle Graham. TAIR10: ferredoxin hydrogenases | chr4:9269263-9271510 REVERSE LENGTH=474 | SoyBase | E_val: 0 | ISS |
| GO:0006396 | GO-bp | Annotation by Michelle Graham. GO Biological Process: RNA processing | SoyBase | N/A | ISS |
| GO:0007059 | GO-bp | Annotation by Michelle Graham. GO Biological Process: chromosome segregation | SoyBase | N/A | ISS |
| GO:0007129 | GO-bp | Annotation by Michelle Graham. GO Biological Process: synapsis | SoyBase | N/A | ISS |
| GO:0007131 | GO-bp | Annotation by Michelle Graham. GO Biological Process: reciprocal meiotic recombination | SoyBase | N/A | ISS |
| GO:0009410 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to xenobiotic stimulus | SoyBase | N/A | ISS |
| GO:0022402 | GO-bp | Annotation by Michelle Graham. GO Biological Process: cell cycle process | SoyBase | N/A | ISS |
| GO:0042138 | GO-bp | Annotation by Michelle Graham. GO Biological Process: meiotic DNA double-strand break formation | SoyBase | N/A | ISS |
| GO:0048522 | GO-bp | Annotation by Michelle Graham. GO Biological Process: positive regulation of cellular process | SoyBase | N/A | ISS |
| GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
| GO:0005829 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: cytosol | SoyBase | N/A | ISS |
| GO:0008901 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: ferredoxin hydrogenase activity | SoyBase | N/A | ISS |
| KOG2439 | KOG | Nuclear architecture related protein | JGI | ISS | |
| PTHR11615 | Panther | NITRATE, FROMATE, IRON DEHYDROGENASE | JGI | ISS | |
| PTHR11615:SF31 | Panther | gb def: nadh dehydrogenase i chain g [aquifex aeolicus] | JGI | ISS | |
| PF02256 | PFAM | Iron hydrogenase small subunit | JGI | ISS | |
| PF02906 | PFAM | Iron only hydrogenase large subunit, C-terminal domain | JGI | ISS | |
| UniRef100_G7J7R8 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Cytosolic Fe-S cluster assembly factor NARFL n=3 Tax=Medicago truncatula RepID=G7J7R8_MEDTR | SoyBase | E_val: 0 | ISS |
| UniRef100_I1KNK2 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1KNK2_SOYBN | SoyBase | E_val: 0 | ISS |
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Glyma07g39690 not represented in the dataset |
Glyma07g39690 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma17g01120 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.07g266900 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma07g39690.1 sequence type=CDS gene model=Glyma07g39690 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGTCGGAGAAATTCTCGGCAGCACTTCGTATTGGAGATCTCAACGATTACATCGCACCATCGCAGGCATGCATAGTCTCCCTCAAAGGATTAAAAAAGAATGATAAACCGGAGGTATCAATTGCTAACAAGCAGGTCAACTTTGAACCTGTTAAAATTTCGCTTAAGGATTGTTTGGCATGCAGTGGATGCGTCACATCAGCAGAGACAGTTATGCTGGAGAAGCAAAGTTTGGATGAGTTTCTGAACAATATTAATTCAGGAAAGGCCGTGATTGTGTCTCTTTCTCCCCAGTCAAGGGCTTCTATTGCTGTTCATTTTGGCATTTCTCCAATTCAGGCTTTCAAAAAGCTGACAAGATTTTTTAAATCCTTGGGAGTGAAGGCAGTTTTTGATACAAGTTGTAGTAGAGATTTGACCCTTGTCGAATCTTGTGTGGAGTTCATCACAAGGTATAGACAGAATCAGTTGGTTGATGATGAGAGGAGTAAATCAAGCCTACCTATGATTGCATCAGCTTGCCCAGGTTGGATATGCTATGCTGAAAAGCAACTTGGATCCTTTGTTCTACCTTATATTTCATCAGTAAAGAGTCCACAGCAAACAGTTGGAGCTATCATAAAGAACTATGTGTGCCAAGAATTAGGACTCAGGCCAGAAGAAGTTTACCATGTCACCGTGATGCCTTGTTATGACAAAAAGCTTGAGGCTGCTAGGGATGACTTTGTTTTCCAATTTGAGTCCCATGTTGAAGGGCTTGAGAGTGAAATTAACATGATTTCAGAGGTAGATTCAGTATTGACAACTGGAGAAGTTTTGGAATTGATTCAGTCAAAAGAAGTTGATTTTAAAAGCCTAGAAGAGACTCCTCTGGACAAAATACTAACAAATATTAATGAAGAAGGATACCTTTATGGGGTCCATGGAAGCTCTGGAGGTTATGCGGAAACAATATTCCGATATGCTGCTAAAACACTTTTTGGAAGACAGATTGATGACCCTTTGACCTTCAGAAACATCAGGAATTCAGATTTTCAGGAAGTTACTCTGGAGGTGGAGGGAAAAACAGTGTTGAAATTTGCTCTCTGTTATGGTTTCCGGAACCTGCAGAACATTGTACGAAAACTTAAAAATGGGAAATGTGATTATCATTTCCTAGAAATTATGGCATGCCCTTCAGGTTGCTTAAATGGGGGAGGTCAAATTAAACCAAATTCAGGGCAATCTCCTAAAGAACTAAGTCAGTTGTTAGAATCAGTTTACATGGAAAATGTTTTGGTAGCATCACCATTTGACAATCCCATCATTAAAGGCTTATATGACAAGTGGCTTGAACAGCCTGGTTCTGTGAAAGCTAGGAGATACATGCACACACAATATCATCCTGTTGAAAAAAGCATTACTTCTCAGTTGCATAATTGGTGA
>Glyma07g39690.1 sequence type=predicted peptide gene model=Glyma07g39690 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MSEKFSAALRIGDLNDYIAPSQACIVSLKGLKKNDKPEVSIANKQVNFEPVKISLKDCLACSGCVTSAETVMLEKQSLDEFLNNINSGKAVIVSLSPQSRASIAVHFGISPIQAFKKLTRFFKSLGVKAVFDTSCSRDLTLVESCVEFITRYRQNQLVDDERSKSSLPMIASACPGWICYAEKQLGSFVLPYISSVKSPQQTVGAIIKNYVCQELGLRPEEVYHVTVMPCYDKKLEAARDDFVFQFESHVEGLESEINMISEVDSVLTTGEVLELIQSKEVDFKSLEETPLDKILTNINEEGYLYGVHGSSGGYAETIFRYAAKTLFGRQIDDPLTFRNIRNSDFQEVTLEVEGKTVLKFALCYGFRNLQNIVRKLKNGKCDYHFLEIMACPSGCLNGGGQIKPNSGQSPKELSQLLESVYMENVLVASPFDNPIIKGLYDKWLEQPGSVKARRYMHTQYHPVEKSITSQLHNW*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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