SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
|
A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT4G17230 | AT | Annotation by Michelle Graham. TAIR10: SCARECROW-like 13 | chr4:9661218-9662807 REVERSE LENGTH=529 | SoyBase | E_val: 0 | ISS |
| GO:0002679 | GO-bp | Annotation by Michelle Graham. GO Biological Process: respiratory burst involved in defense response | SoyBase | N/A | ISS |
| GO:0006355 | GO-bp | Annotation by Michelle Graham. GO Biological Process: regulation of transcription, DNA-dependent | SoyBase | N/A | ISS |
| GO:0006612 | GO-bp | Annotation by Michelle Graham. GO Biological Process: protein targeting to membrane | SoyBase | N/A | ISS |
| GO:0009693 | GO-bp | Annotation by Michelle Graham. GO Biological Process: ethylene biosynthetic process | SoyBase | N/A | ISS |
| GO:0009863 | GO-bp | Annotation by Michelle Graham. GO Biological Process: salicylic acid mediated signaling pathway | SoyBase | N/A | ISS |
| GO:0009867 | GO-bp | Annotation by Michelle Graham. GO Biological Process: jasmonic acid mediated signaling pathway | SoyBase | N/A | ISS |
| GO:0009873 | GO-bp | Annotation by Michelle Graham. GO Biological Process: ethylene mediated signaling pathway | SoyBase | N/A | ISS |
| GO:0010200 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to chitin | SoyBase | N/A | ISS |
| GO:0010363 | GO-bp | Annotation by Michelle Graham. GO Biological Process: regulation of plant-type hypersensitive response | SoyBase | N/A | ISS |
| GO:0035556 | GO-bp | Annotation by Michelle Graham. GO Biological Process: intracellular signal transduction | SoyBase | N/A | ISS |
| GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
| GO:0003700 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding transcription factor activity | SoyBase | N/A | ISS |
| PF03514 | PFAM | GRAS family transcription factor | JGI | ISS | |
| UniRef100_C6TJ61 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=C6TJ61_SOYBN | SoyBase | E_val: 0 | ISS |
| UniRef100_G7JLR5 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Chitin-inducible gibberellin-responsive protein n=1 Tax=Medicago truncatula RepID=G7JLR5_MEDTR | SoyBase | E_val: 0 | ISS |
|
Glyma07g39650 not represented in the dataset |
Glyma07g39650 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma17g01150 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.07g266500 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma07g39650.4 sequence type=transcript gene model=Glyma07g39650 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high AGTTTTTTAGGTTAGTTGCTGGCATTGGCAAGCAATCTGGTTTCTCTCTCCTCTCTGCACTGCACCCCACAACTCAAACTGAGCAGTCACAGACACAGGTATGCTCTCGCTGGACACTTCCTAGTTTTCAACTACATGTGTTCATGCCTTGTGGGGAATGCCTCTAATTGCTGTCTCATCTGTTGGATCATTCAGCTCAAACTCCCACTTCTGTCTCATTTTCAATTTTCCGGTTTTATCGACAATCCCCACATAGAATACCCGTTGGCCAACCGACCTCCTTACCATTCAATTTCGTCGGGTTTCAGCAACGACTTCCACTTTTTTTATTAGTTAAGAGAACCCCCCCCCAAAAAAATGAAGAAAACTACTTTCTTTTTTACGTCTAAGTCTCTCTTCTGTTACTAGTCAGTCTTGTGGTGATCTCAAAGCCTCTAACTTTCCTCAGAGGTTGACGATTTTCGGTTTTGGCACCCAAGGGGTTGAATTTCCTGGCATGTATGGTTGATTTTATTTATTTTTTCCTTCCTCGAGTGTCAGCAGTGGTCTTTCCTTGTGCATTTATTCTTCTTCCCTTGTTGAATCGTTGAGTCAAATGCTTTCTATTTTTACAGAACAGAGCCTTTCGGTTATGTATAATTTGTGTGTATGTTTCCGCAATTTTAAATTACGCGCTACTGCTAGCGTATCCGATCAAAAGTTCTTTTCCTCGGGAACATGACACGAGTAAATATATACTTTTTTTTTCTGTGGTTTCTGGTTGCCTTATTATTGTCAGGATTTCTTCTATGATCTTTTATTATTTGATGAAGTCTCAGTTGGGAAATTTAACTAAATACTAGTGGATGGTAATTTAAAGTGTATTGAATCTATTGATGCCTATCTATAAGTATTGGGAGATTTATTTAAGCTCCTTGATTGATCAGTCAGATTCTAAAAATTAACACCACCTCCTTCCACCTTAAAAGAAATCCTATTTCCATATGAGAGTGAGTTTGCATCTCATGACTCTGGAGAAGGTGTATAGCTCTCAGGATTCGTACTAATCAAATATTTTTAATTACATGGATTCATGCGAGAATCTCTTCAGTAGCCTTTTTTTTTCCTTTGATAGACATTTGAAGTTTGAATTTACTTTTGTTTAGCTCATCTTAATTATTTTTAGATCTTCATCTGTCAACCCGTTTGAACGTATTTCTTTGCTTTGTTTAATCAACGTTAACTGTTCTTAATAATTCTATCTTATTTTAATATGCAGGTTGTGTGTCTTTAAAACATCTATGAACTGTTGTTGGCACTTGGCAGATAATTATTGCATCTAGCAACCCATAAAGACGGTGACTATGAGTAATCTGCAAAATTTTAATGCTATACTCTGTGTCTCTGAATGACCATCAAGTGATCCGGTGCGGTTGGAAAGAACCTTCCGAATTACAAAGATTGACTACTTGTTATTCTCATTGGTGGAGTTAATAGTTATTTTGTAGATGCAAACGTCTCAGAAACACCCAAGTTCAGCTGGTGTCCATTTCTATCACCAGCCTGTGCAAGGCATTTACCAAATGTTGCAAAGCAATCTATGCCATGATAGCAGCAGCCAGGGAACAAGTGTTTCTTTTGAAACCTGCAAGGAGCAATACTTTACTCTAGAATCATGCCCAGCACCCACTACTTGTTTCGTGGATTGTGATGATTCTCCTTCCTATGCCAGTGTATCATCTAAAAGGACTCCATTTTCTCCACAGGGTTCTCAGTCATGCTATTCAGATCACCAGCAGTCCTCTGACAACACCTACGGTTCGCCAATAAGCGGCTTGTCCAGTGTTGATGACGGGCATGAACTGAAGCACAAGCTTAGAGAACTGGAGATTTCATTGTTGGGGCCTGAACAATCAGACAGTTGCGGCTGCTGCGTCGTCAAGGGTGGCCTCCAGGGATCATCTCAGTTGGCTAAACATAACTGGGATCAGATTGCAGAGAACGTTGCACAATTTGACTTGAAAGGAGTCCTCAGGGTATGTGCACAGGCTGTGTCTGATGATGATGTTCCAACAGCAAGAGGCTGGATGGATAATGTATTGGGGAAAATGGTATCAGTCTCTGGTGATCCAATCCAGAGGCTGGGTGCTTACTTATTGGAGGGGCTTAGAGCAAGGTTGGAATCATCAGGGAATCTCATCTACAAATCCTTGAATTGTGAACAACCAACAAGCAAAGAACTAATGAGTTACATGCACATTTTGTACCAGATTTGCCCGTACTGGAAGTTTGCATACATATCTGCAAATGCTGTCATTGAAGAAGCAATGGCAAATGAGTCCAGGATTCACATAATTGATTTCCAAATTGCGCAGGGCACGCAGTGGCATTTACTTATCCAGGCTCTTGCACATAGGCCTGGGGGACCCCCCTCCCTTCGTGTGACAGGTGTTGATGATTCGCAGTCGATTCATGCACGTGGTGGAGGACTTCAGATTGTAGGAGAAAGGCTTTCAGATTTTGCCAGGTCTTGTGGAGTTCCATTTGAATTCCGCAGTGCTGCAATATCTGGCTGTGAGGTTGTACGAGGAAATATTGAAGTTCTACCCGGAGAAGCTCTGGCTGTAAGTTTTCCCTATGTTTTGCACCACATGCCTGATGAGAGTGTGAGCACTGAGAATCACAGAGATAGATTGCTGAGGTTGGTTAAGAGGTTGTCTCCCAAGGTTGTTACCATTGTTGAGCAAGAATCCAACACCAACACGTCCCCATTCTTTCACAGGTTTGTTGAGACCCTGGATTATTATACTGCAATGTTTGAATCTATAGATGTGGCTTGCCCCAGAGATGACAAGAAGCGGATTAGCGCAGAGCAGCATTGCGTGGCACGAGACATCGTCAACATGATAGCTTGTGAGGGGGTTGAGAGGGTGGAGAGGCATGAACTTTTGGGAAAGTGGAGGTCAAGACTTTCCATGGCTGGATTTAAACAGTGTCAATTGAGTTCTTCAGTGATGGTTGCTATACAAAATCTCCTAAAGGAGTTCAGTCAAAATTATAGGCTTGAACATAGAGATGGTGCTCTTTATCTTGGTTGGATGAACAGACATATGGCCACCTCTTCTGCTTGGAGGTGAAACTCACTGATTCGAGAGTTTGCCTCCTTTTTGACCTTTAATTGAGCATAATTCACCATATATCCGTAGTAGTCTCTCCATAGGACTTGAGATTTACCTCTGTTCTAAAATGCTTTCTGTAGAATCTCAAAGCTCGTTGTAAATGCTAATACTGAAACGAAAGAAAAGAAACGTCTGTTATGACTCTAGCATTATTTTCCTGCCCTCTTCCGCTGGCTGTAGTGTTATTTTAACTAATGTGATATGAGTTGGATACTCGTTTAGTTCCTTGTACTGACTCAAATGAGAAACCTTACACTACAGATTTACATTAAGCTCAAGGTTTTGTTGGTCTACTACTCTACTATATATCACCCTGTAGTCATAATAGATACATAATTCTACGCATGCATAATGAATTTACTTCTTCTTGAGTTTATTTGCTTTGTAGAAGTAACATTTACCTG
>Glyma07g39650.3 sequence type=CDS gene model=Glyma07g39650 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGCAAACGTCTCAGAAACACCCAAGTTCAGCTGGTGTCCATTTCTATCACCAGCCTGTGCAAGGCATTTACCAAATGTTGCAAAGCAATCTATGCCATGATAGCAGCAGCCAGGGAACAAGTGTTTCTTTTGAAACCTGCAAGGAGCAATACTTTACTCTAGAATCATGCCCAGCACCCACTACTTGTTTCGTGGATTGTGATGATTCTCCTTCCTATGCCAGTGTATCATCTAAAAGGACTCCATTTTCTCCACAGGGTTCTCAGTCATGCTATTCAGATCACCAGCAGTCCTCTGACAACACCTACGGTTCGCCAATAAGCGGCTTGTCCAGTGTTGATGACGGGCATGAACTGAAGCACAAGCTTAGAGAACTGGAGATTTCATTGTTGGGGCCTGAACAATCAGACAGTTGCGGCTGCTGCGTCGTCAAGGGTGGCCTCCAGGGATCATCTCAGTTGGCTAAACATAACTGGGATCAGATTGCAGAGAACGTTGCACAATTTGACTTGAAAGGAGTCCTCAGGGTATGTGCACAGGCTGTGTCTGATGATGATGTTCCAACAGCAAGAGGCTGGATGGATAATGTATTGGGGAAAATGGTATCAGTCTCTGGTGATCCAATCCAGAGGCTGGGTGCTTACTTATTGGAGGGGCTTAGAGCAAGGTTGGAATCATCAGGGAATCTCATCTACAAATCCTTGAATTGTGAACAACCAACAAGCAAAGAACTAATGAGTTACATGCACATTTTGTACCAGATTTGCCCGTACTGGAAGTTTGCATACATATCTGCAAATGCTGTCATTGAAGAAGCAATGGCAAATGAGTCCAGGATTCACATAATTGATTTCCAAATTGCGCAGGGCACGCAGTGGCATTTACTTATCCAGGCTCTTGCACATAGGCCTGGGGGACCCCCCTCCCTTCGTGTGACAGGTGTTGATGATTCGCAGTCGATTCATGCACGTGGTGGAGGACTTCAGATTGTAGGAGAAAGGCTTTCAGATTTTGCCAGGTCTTGTGGAGTTCCATTTGAATTCCGCAGTGCTGCAATATCTGGCTGTGAGGTTGTACGAGGAAATATTGAAGTTCTACCCGGAGAAGCTCTGGCTGTAAGTTTTCCCTATGTTTTGCACCACATGCCTGATGAGAGTGTGAGCACTGAGAATCACAGAGATAGATTGCTGAGGTTGGTTAAGAGGTTGTCTCCCAAGGTTGTTACCATTGTTGAGCAAGAATCCAACACCAACACGTCCCCATTCTTTCACAGGTTTGTTGAGACCCTGGATTATTATACTGCAATGTTTGAATCTATAGATGTGGCTTGCCCCAGAGATGACAAGAAGCGGATTAGCGCAGAGCAGCATTGCGTGGCACGAGACATCGTCAACATGATAGCTTGTGAGGGGGTTGAGAGGGTGGAGAGGCATGAACTTTTGGGAAAGTGGAGGTCAAGACTTTCCATGGCTGGATTTAAACAGTGTCAATTGAGTTCTTCAGTGATGGTTGCTATACAAAATCTCCTAAAGGAGTTCAGTCAAAATTATAGGCTTGAACATAGAGATGGTGCTCTTTATCTTGGTTGGATGAACAGACATATGGCCACCTCTTCTGCTTGGAGGTGA >Glyma07g39650.4 sequence type=CDS gene model=Glyma07g39650 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGCAAACGTCTCAGAAACACCCAAGTTCAGCTGGTGTCCATTTCTATCACCAGCCTGTGCAAGGCATTTACCAAATGTTGCAAAGCAATCTATGCCATGATAGCAGCAGCCAGGGAACAAGTGTTTCTTTTGAAACCTGCAAGGAGCAATACTTTACTCTAGAATCATGCCCAGCACCCACTACTTGTTTCGTGGATTGTGATGATTCTCCTTCCTATGCCAGTGTATCATCTAAAAGGACTCCATTTTCTCCACAGGGTTCTCAGTCATGCTATTCAGATCACCAGCAGTCCTCTGACAACACCTACGGTTCGCCAATAAGCGGCTTGTCCAGTGTTGATGACGGGCATGAACTGAAGCACAAGCTTAGAGAACTGGAGATTTCATTGTTGGGGCCTGAACAATCAGACAGTTGCGGCTGCTGCGTCGTCAAGGGTGGCCTCCAGGGATCATCTCAGTTGGCTAAACATAACTGGGATCAGATTGCAGAGAACGTTGCACAATTTGACTTGAAAGGAGTCCTCAGGGTATGTGCACAGGCTGTGTCTGATGATGATGTTCCAACAGCAAGAGGCTGGATGGATAATGTATTGGGGAAAATGGTATCAGTCTCTGGTGATCCAATCCAGAGGCTGGGTGCTTACTTATTGGAGGGGCTTAGAGCAAGGTTGGAATCATCAGGGAATCTCATCTACAAATCCTTGAATTGTGAACAACCAACAAGCAAAGAACTAATGAGTTACATGCACATTTTGTACCAGATTTGCCCGTACTGGAAGTTTGCATACATATCTGCAAATGCTGTCATTGAAGAAGCAATGGCAAATGAGTCCAGGATTCACATAATTGATTTCCAAATTGCGCAGGGCACGCAGTGGCATTTACTTATCCAGGCTCTTGCACATAGGCCTGGGGGACCCCCCTCCCTTCGTGTGACAGGTGTTGATGATTCGCAGTCGATTCATGCACGTGGTGGAGGACTTCAGATTGTAGGAGAAAGGCTTTCAGATTTTGCCAGGTCTTGTGGAGTTCCATTTGAATTCCGCAGTGCTGCAATATCTGGCTGTGAGGTTGTACGAGGAAATATTGAAGTTCTACCCGGAGAAGCTCTGGCTGTAAGTTTTCCCTATGTTTTGCACCACATGCCTGATGAGAGTGTGAGCACTGAGAATCACAGAGATAGATTGCTGAGGTTGGTTAAGAGGTTGTCTCCCAAGGTTGTTACCATTGTTGAGCAAGAATCCAACACCAACACGTCCCCATTCTTTCACAGGTTTGTTGAGACCCTGGATTATTATACTGCAATGTTTGAATCTATAGATGTGGCTTGCCCCAGAGATGACAAGAAGCGGATTAGCGCAGAGCAGCATTGCGTGGCACGAGACATCGTCAACATGATAGCTTGTGAGGGGGTTGAGAGGGTGGAGAGGCATGAACTTTTGGGAAAGTGGAGGTCAAGACTTTCCATGGCTGGATTTAAACAGTGTCAATTGAGTTCTTCAGTGATGGTTGCTATACAAAATCTCCTAAAGGAGTTCAGTCAAAATTATAGGCTTGAACATAGAGATGGTGCTCTTTATCTTGGTTGGATGAACAGACATATGGCCACCTCTTCTGCTTGGAGGTGA
>Glyma07g39650.3 sequence type=predicted peptide gene model=Glyma07g39650 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MQTSQKHPSSAGVHFYHQPVQGIYQMLQSNLCHDSSSQGTSVSFETCKEQYFTLESCPAPTTCFVDCDDSPSYASVSSKRTPFSPQGSQSCYSDHQQSSDNTYGSPISGLSSVDDGHELKHKLRELEISLLGPEQSDSCGCCVVKGGLQGSSQLAKHNWDQIAENVAQFDLKGVLRVCAQAVSDDDVPTARGWMDNVLGKMVSVSGDPIQRLGAYLLEGLRARLESSGNLIYKSLNCEQPTSKELMSYMHILYQICPYWKFAYISANAVIEEAMANESRIHIIDFQIAQGTQWHLLIQALAHRPGGPPSLRVTGVDDSQSIHARGGGLQIVGERLSDFARSCGVPFEFRSAAISGCEVVRGNIEVLPGEALAVSFPYVLHHMPDESVSTENHRDRLLRLVKRLSPKVVTIVEQESNTNTSPFFHRFVETLDYYTAMFESIDVACPRDDKKRISAEQHCVARDIVNMIACEGVERVERHELLGKWRSRLSMAGFKQCQLSSSVMVAIQNLLKEFSQNYRLEHRDGALYLGWMNRHMATSSAWR* >Glyma07g39650.4 sequence type=predicted peptide gene model=Glyma07g39650 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MQTSQKHPSSAGVHFYHQPVQGIYQMLQSNLCHDSSSQGTSVSFETCKEQYFTLESCPAPTTCFVDCDDSPSYASVSSKRTPFSPQGSQSCYSDHQQSSDNTYGSPISGLSSVDDGHELKHKLRELEISLLGPEQSDSCGCCVVKGGLQGSSQLAKHNWDQIAENVAQFDLKGVLRVCAQAVSDDDVPTARGWMDNVLGKMVSVSGDPIQRLGAYLLEGLRARLESSGNLIYKSLNCEQPTSKELMSYMHILYQICPYWKFAYISANAVIEEAMANESRIHIIDFQIAQGTQWHLLIQALAHRPGGPPSLRVTGVDDSQSIHARGGGLQIVGERLSDFARSCGVPFEFRSAAISGCEVVRGNIEVLPGEALAVSFPYVLHHMPDESVSTENHRDRLLRLVKRLSPKVVTIVEQESNTNTSPFFHRFVETLDYYTAMFESIDVACPRDDKKRISAEQHCVARDIVNMIACEGVERVERHELLGKWRSRLSMAGFKQCQLSSSVMVAIQNLLKEFSQNYRLEHRDGALYLGWMNRHMATSSAWR*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
|
|
|
