Glyma07g39580 - SoyBase

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Report for Sequence Feature Glyma07g39580

Feature Type:	gene_model
Chromosome:	Gm07
Start:	44026808
stop:	44029322
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma07g39580

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G47560	AT	Annotation by Michelle Graham. TAIR10: tonoplast dicarboxylate transporter \| chr5:19287895-19290347 REVERSE LENGTH=540	SoyBase	E_val: 2.00E-87	ISS
GO:0006814	GO-bp	Annotation by Michelle Graham. GO Biological Process: sodium ion transport	SoyBase	N/A	ISS
GO:0006835	GO-bp	Annotation by Michelle Graham. GO Biological Process: dicarboxylic acid transport	SoyBase	N/A	ISS
GO:0015743	GO-bp	Annotation by Michelle Graham. GO Biological Process: malate transport	SoyBase	N/A	ISS
GO:0035725	GO-bp	Annotation by Michelle Graham. GO Biological Process: sodium ion transmembrane transport	SoyBase	N/A	ISS
GO:0051453	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of intracellular pH	SoyBase	N/A	ISS
GO:0055085	GO-bp	Annotation by Michelle Graham. GO Biological Process: transmembrane transport	SoyBase	N/A	ISS
GO:0005773	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: vacuole	SoyBase	N/A	ISS
GO:0016020	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: membrane	SoyBase	N/A	ISS
GO:0005215	GO-mf	Annotation by Michelle Graham. GO Molecular Function: transporter activity	SoyBase	N/A	ISS
GO:0015140	GO-mf	Annotation by Michelle Graham. GO Molecular Function: malate transmembrane transporter activity	SoyBase	N/A	ISS
GO:0017153	GO-mf	Annotation by Michelle Graham. GO Molecular Function: dicarboxylic acid transport	SoyBase	N/A	ISS
PTHR10283	Panther	CATION TRANSPORTER RELATED	JGI		ISS
PTHR10283:SF37	Panther	SODIUM/DICARBOXYLATE COTRANSPORTER-RELATED	JGI		ISS
PF00939	PFAM	Sodium:sulfate symporter transmembrane region	JGI		ISS
UniRef100_G7JLM6	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Tonoplast malate transporter/sodium dicarboxylate symporter n=1 Tax=Medicago truncatula RepID=G7JLM6_MEDTR	SoyBase	E_val: 9.00E-121	ISS
UniRef100_I1KNJ3	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Glycine max RepID=I1KNJ3_SOYBN	SoyBase	E_val: 3.00E-134	ISS

Expression Patterns of Glyma07g39580

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma07g39580 not represented in the dataset	Glyma07g39580 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma07g39580 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.07g265900	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma07g39580

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma07g39580

Limit To All Plant Sequences

>Glyma07g39580.2   sequence type=transcript   gene model=Glyma07g39580   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
GTTAGATTTTAGTAAACCCTCGCCGTATGATTGATAACTAATGACATTGAACATCCTATATCTTAGCTAATAGTAAGAAAAACTAATATGATAATCTGAATAGTGTGTTCAATTTTGTGTTGGGAATTTCCTTTTAGGAGCCGAGCCAGTTCAGACTCAAACTTATCGTCAATTTTTGTCGTTGTCTTTGATTGCGCATTTTTTGTTGGCCAATTGCAAACTTGTTCAGTTTTTCTATTTGCCTGCGAAAAACAGTCTTTGCGGTTTTGAAGAGCCATTTTCACTATACGTTCACCCCCTATATATATATATATATATATTGCTGGATACGTAATCATTATAAAAAAAAATTCAAAGAAGAAAATATTAGTAGACACTTTTTGAGTGTAGATTTTGGTGATATATCTGGTTAGGGAGGAACAAAATAAAGAAGAAAGAATTTACGGACGATGATATAATTTTTCTTCCTTGGTTAGAGAGAAAATGGAAAAAAAAGACAAATTATTACTTAAACTAAAAATTTTAAAGTTTTTAATTTTATTTTTTTAACTCAAAATTTAATTTTCTTCTTTCATCCAATCAAACAGACCCTCGTGCTCTGTTTGGTAGTAGTGAAGTGAGAGAGTGAATTGCTAGATTTTGTCGATTTGATAGAAACAAATGAATATATATAAAGAAGCAAGTTTGGGCACTCCTTCTGGTGTTTTAGTTTATGGAAAAAAAATCATCGATAAAAGGGCAGCACTCAGTCTTTACTTCTTCCAGCCTAAAGTCCCCCCTTCTTCCAATTCACCAACAAACACAGAGCTCCTCCCCCTTCACCCTGAAATCCCTTTTGTATGTGATCATAGGACCCTTCTTGTCCCTCGTAATATGTCTCTTTGTCAACCTCGATGCTTGCCGTGATTGCTTGGGTCTATTCTTGGTGGGTCACCGCCGCCGTGCCTCTTCCGGTGACCTCCATGTGTCCCAAGTTCAACAGAGCGGTGGTTCTGACGGTGGTGTACGCCACCCCCATTGGAGGGATCAGCACTTCACAATTTGCTCTGATACAATTTTTAGAATGTAAGTTTAGGCCTAATTCAACCCAAAAGCTAGCTCTAAGTATTCTAACTTGGCTTTACTTTTAGCGGATGTGACTTGGGTTTTTCTCAACATGGTTCTTCTTCGGTTTTCCTGTTGCCATTCTCTTCCTCTTCTCTTTTGGTGCATCGTCTGTTTCCTCTATGTTCCAAAGGACTCCTCTCGGGCCTTGTCTTCTTTATCATTTGACATTCCCGGATGGGGAGCTTGCTTCCATGGTCTTGTTGGTGATGGAAGTGTTAGTGTTATGGTGGCTGTGTTATTGTTCATAATCCCAAACAAGAAACAAGAGGGGGAGAAGCTAATGGATTGGAATGAACGCAAGAAGTTACCTTGGAACCTTATTTTGCTTCTTGGAGCAGGGTTTGCTTTAGCTGATGGAGTCCAATCTAGTGGCCTAGCAGACGTGCTTTCCAGAGCCTTGGATTTCTTGGAAGATACACCATACTGGGCCATTGCTCCTGCTGTTAGTCTTATGAGTAGCATTATTACAGAGTTCATCACATCTAACGATGCCACTGCCACTGCCACACTTCTAATCCCACTTCTATATAACATAGCCAAGACTATGCATGTGCATCCTCTTCTTCTTATGGTACCTGGAGCAGTGGCAACTGCTTTCTTACTTCCAACTTCAACTCCATCAAATGTAGTGGGATTTGCCACTGGCCATATTGAAATCCTAGACATGCTCAAAATTGGCGTGCCACTTAAGGTTGCAGGGATAGCTGTGCTCTCAATTTTCATGCCAACTCTAGGAGCTATTGTTTTTGGAACAGATGACTATATTCAATGGATGCCAAACATAAACTCTCCTTGGTTGAGAAATTGATTTCTTCTCCAAATTCCACCCTGCTTTACAAATTCCTGGTGTTCTCTATCATTGACAATCCACACGACCTCCCTTATTACTATGTAGATCAATACATGGCAATTGTGGAAACCCATAATATATATAATAATATAAGCAAAATTGTAAATTTCATCAGTCATCTTATCTTTAATTTCAGATTTTATCTTCCGATCAACCACCTTCTTTTGTAACGATCAACGTCCGCTTGTACACTGGGACAATCCGTAATTGAAAACAAAATAAAAGATAAAAATACAATTTTATCAATAATATATGGATATCAACAGGCAAAGGAGGAGGAGATAGAAATATCTCCCTGTTTACTGGCGGAAAAGATTTTATCAATTTTCTGTTGTAATCTTTTCTTCCACCAATTATTGAAGGAAAAATGGATTGGAGA

Coding sequences of Glyma07g39580

Limit To All Plant Sequences

>Glyma07g39580.1   sequence type=CDS   gene model=Glyma07g39580   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGTGGCTGTGTTATTGTTCATAATCCCAAACAAGAAACAAGAGGGGGAGAAGCTAATGGATTGGAATGAACGCAAGAAGTTACCTTGGAACCTTATTTTGCTTCTTGGAGCAGGGTTTGCTTTAGCTGATGGAGTCCAATCTAGTGGCCTAGCAGACGTGCTTTCCAGAGCCTTGGATTTCTTGGAAGATACACCATACTGGGCCATTGCTCCTGCTGTTAGTCTTATGAGTAGCATTATTACAGAGTTCATCACATCTAACGATGCCACTGCCACTGCCACACTTCTAATCCCACTTCTATATAACATAGCCAAGACTATGCATGTGCATCCTCTTCTTCTTATGGTACCTGGAGCAGTGGCAACTGCTTTCTTACTTCCAACTTCAACTCCATCAAATGTAGTGGGATTTGCCACTGGCCATATTGAAATCCTAGACATGCTCAAAATTGGCGTGCCACTTAAGGTTGCAGGGATAGCTGTGCTCTCAATTTTCATGCCAACTCTAGGAGCTATTGTTTTTGGAACAGATGACTATATTCAATGGATGCCAAACATAAACTCTCCTTGGTTGAGAAATTGA

>Glyma07g39580.2   sequence type=CDS   gene model=Glyma07g39580   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGTTCTTCTTCGGTTTTCCTGTTGCCATTCTCTTCCTCTTCTCTTTTGGTGCATCGTCTGTTTCCTCTATGTTCCAAAGGACTCCTCTCGGGCCTTGTCTTCTTTATCATTTGACATTCCCGGATGGGGAGCTTGCTTCCATGGTCTTGTTGGTGATGGAAGTGTTAGTGTTATGGTGGCTGTGTTATTGTTCATAATCCCAAACAAGAAACAAGAGGGGGAGAAGCTAATGGATTGGAATGAACGCAAGAAGTTACCTTGGAACCTTATTTTGCTTCTTGGAGCAGGGTTTGCTTTAGCTGATGGAGTCCAATCTAGTGGCCTAGCAGACGTGCTTTCCAGAGCCTTGGATTTCTTGGAAGATACACCATACTGGGCCATTGCTCCTGCTGTTAGTCTTATGAGTAGCATTATTACAGAGTTCATCACATCTAACGATGCCACTGCCACTGCCACACTTCTAATCCCACTTCTATATAACATAGCCAAGACTATGCATGTGCATCCTCTTCTTCTTATGGTACCTGGAGCAGTGGCAACTGCTTTCTTACTTCCAACTTCAACTCCATCAAATGTAGTGGGATTTGCCACTGGCCATATTGAAATCCTAGACATGCTCAAAATTGGCGTGCCACTTAAGGTTGCAGGGATAGCTGTGCTCTCAATTTTCATGCCAACTCTAGGAGCTATTGTTTTTGGAACAGATGACTATATTCAATGGATGCCAAACATAAACTCTCCTTGGTTGAGAAATTGA

Predicted protein sequences of Glyma07g39580

Limit To All Plant Sequences

>Glyma07g39580.1   sequence type=predicted peptide   gene model=Glyma07g39580   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MVAVLLFIIPNKKQEGEKLMDWNERKKLPWNLILLLGAGFALADGVQSSGLADVLSRALDFLEDTPYWAIAPAVSLMSSIITEFITSNDATATATLLIPLLYNIAKTMHVHPLLLMVPGAVATAFLLPTSTPSNVVGFATGHIEILDMLKIGVPLKVAGIAVLSIFMPTLGAIVFGTDDYIQWMPNINSPWLRN*

>Glyma07g39580.2   sequence type=predicted peptide   gene model=Glyma07g39580   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MVLLRFSCCHSLPLLFWCIVCFLYVPKDSSRALSSLSFDIPGWGACFHGLVGDGSVSVMVAVLLFIIPNKKQEGEKLMDWNERKKLPWNLILLLGAGFALADGVQSSGLADVLSRALDFLEDTPYWAIAPAVSLMSSIITEFITSNDATATATLLIPLLYNIAKTMHVHPLLLMVPGAVATAFLLPTSTPSNVVGFATGHIEILDMLKIGVPLKVAGIAVLSIFMPTLGAIVFGTDDYIQWMPNINSPWLRN*

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