Glyma07g39560 - SoyBase

SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research

Report for Sequence Feature Glyma07g39560

Feature Type:	gene_model
Chromosome:	Gm07
Start:	44021195
stop:	44024055
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma07g39560

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT4G12560	AT	Annotation by Michelle Graham. TAIR10: F-box and associated interaction domains-containing protein \| chr4:7441815-7443157 FORWARD LENGTH=413	SoyBase	E_val: 7.00E-59	ISS
GO:0031348	GO-bp	Annotation by Michelle Graham. GO Biological Process: negative regulation of defense response	SoyBase	N/A	ISS
GO:0042177	GO-bp	Annotation by Michelle Graham. GO Biological Process: negative regulation of protein catabolic process	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0005737	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm	SoyBase	N/A	ISS
GO:0003674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: molecular function	SoyBase	N/A	ISS
GO:0005515	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein binding	SoyBase	N/A	ISS
PTHR10775	Panther	AC-LIKE TRANSPOSASE-RELATED	JGI		ISS
PTHR10775:SF7	Panther	TRANSPOSASE-LIKE PROTEIN	JGI		ISS
PF00646	PFAM	F-box domain	JGI		ISS
PF07734	PFAM	F-box associated	JGI		ISS
UniRef100_G7JLM2	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: F-box family protein n=1 Tax=Medicago truncatula RepID=G7JLM2_MEDTR	SoyBase	E_val: 7.00E-161	ISS
UniRef100_I1KNJ2	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1KNJ2_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma07g39560

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma07g39560

Paralog	Evidence	Comments
Glyma17g01190	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma07g39560 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.07g265800	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma07g39560

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma07g39560

Limit To All Plant Sequences

>Glyma07g39560.1   sequence type=CDS   gene model=Glyma07g39560   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGATGGCAAACCTTCCGGTGGAAGTAGTGACCGAAATCCTGTCCCGTCTACCGGTGAAGTCGGTGATCCGGCTGCGGTCTACCTGCAAGTGGTGGCGGTCCATCATCGACAGCAGGCACTTCGTCCTCTTCCACCTCAACAAATCCCACTCCAGCCTCATTCTCCGCCACCGCTCCCACCTCTACTCCTTGGACCTCAAATCTCCGGAACAGAATCCCGTGGAACTGAGCCACCCCCTGATGTGCTACAGCAACAGCATCAAGGTCCTCGGCTCCTCCAACGGCCTCCTCTGCATCTCCAACGTTGCTGACGACATCGCCCTCTGGAACCCTTTCCTCCGCAAGCACCGTATTCTCCCCGCCGACCGCTTCCACCGCCCCCAATCCTCCCTCTTCGCCGCCCGCGTCTACGGCTTCGGCCACCACTCCCCCTCCAACGACTACAAGCTCCTGAGCATTACCTACTTCGTGGATCTCCAGAAACGCACCTTCGATTCCCAGGTCCAGCTCTACACCCTCAAATCCGACTCCTGGAAGAACCTCCCCAGCATGCCCTACGCCCTCTGCTGCGCCCGCACCATGGGCGTCTTCGTCTCCGGCTCCCTCCACTGGCTCGTCACCAGAAAACTCCAACCCCACGAACCCGATCTCATCGTCTCCTTTGACCTCACGCGCGAGACATTCCATGAAGTGCCTCTCCCTGTAACCGTCAACGGAGATTTCGACATGCAAGTTGCTTTATTAGGAGGATGTCTCTGCGTGGTGGAGCATAGGGGAACTGGATTTGATGTTTGGGTCATGAGAGTGTACGGATCTAGAAATTCATGGGAGAAACTGTTTACGCTATTAGAGAACAACGACCATCATGAGATGATGGGATCAGGGAAATTGAAATATGTGAGGCCTTTGGCTTTGGATGGGGACAGGGTTTTGTTCGAACACAACCGTAGCAAGCTCTGTTGGTATAACCTCAAAACTGGTGACGTGAGTTGCGTTAAAATAACTGCTGCAATTGGAAACACGATTGAAGGCACGGTTTGTGTAGAAAGCCTTGTTCCGCCAACTTTACTGAATCTGCGTGATGAGAGCCAGAGCCAGGAGAAAAATGGGAAGAAAAGGGATGACTTCCTCTCTCAGGGGTTCAAATTGACCTTGTAA

Predicted protein sequences of Glyma07g39560

Limit To All Plant Sequences

>Glyma07g39560.1   sequence type=predicted peptide   gene model=Glyma07g39560   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MMANLPVEVVTEILSRLPVKSVIRLRSTCKWWRSIIDSRHFVLFHLNKSHSSLILRHRSHLYSLDLKSPEQNPVELSHPLMCYSNSIKVLGSSNGLLCISNVADDIALWNPFLRKHRILPADRFHRPQSSLFAARVYGFGHHSPSNDYKLLSITYFVDLQKRTFDSQVQLYTLKSDSWKNLPSMPYALCCARTMGVFVSGSLHWLVTRKLQPHEPDLIVSFDLTRETFHEVPLPVTVNGDFDMQVALLGGCLCVVEHRGTGFDVWVMRVYGSRNSWEKLFTLLENNDHHEMMGSGKLKYVRPLALDGDRVLFEHNRSKLCWYNLKTGDVSCVKITAAIGNTIEGTVCVESLVPPTLLNLRDESQSQEKNGKKRDDFLSQGFKLTL*

Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA

U.S. Public Domain