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Report for Sequence Feature Glyma07g39546

Feature Type:gene_model
Chromosome:Gm07
Start:44005949
stop:44011941
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma07g39546
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT4G12570AT Annotation by Michelle Graham. TAIR10: ubiquitin protein ligase 5 | chr4:7445585-7448819 FORWARD LENGTH=873 SoyBaseE_val: 0ISS
GO:0006464GO-bp Annotation by Michelle Graham. GO Biological Process: cellular protein modification process SoyBaseN/AISS
GO:0007165GO-bp Annotation by Michelle Graham. GO Biological Process: signal transduction SoyBaseN/AISS
GO:0009753GO-bp Annotation by Michelle Graham. GO Biological Process: response to jasmonic acid stimulus SoyBaseN/AISS
GO:0009755GO-bp Annotation by Michelle Graham. GO Biological Process: hormone-mediated signaling pathway SoyBaseN/AISS
GO:0010150GO-bp Annotation by Michelle Graham. GO Biological Process: leaf senescence SoyBaseN/AISS
GO:0016567GO-bp Annotation by Michelle Graham. GO Biological Process: protein ubiquitination SoyBaseN/AISS
GO:0042542GO-bp Annotation by Michelle Graham. GO Biological Process: response to hydrogen peroxide SoyBaseN/AISS
GO:0005622GO-cc Annotation by Michelle Graham. GO Cellular Compartment: intracellular SoyBaseN/AISS
GO:0005634GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nucleus SoyBaseN/AISS
GO:0005737GO-cc Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm SoyBaseN/AISS
GO:0004842GO-mf Annotation by Michelle Graham. GO Molecular Function: ubiquitin-protein ligase activity SoyBaseN/AISS
GO:0005515GO-mf Annotation by Michelle Graham. GO Molecular Function: protein binding SoyBaseN/AISS
GO:0016881GO-mf Annotation by Michelle Graham. GO Molecular Function: acid-amino acid ligase activity SoyBaseN/AISS
KOG0940 KOG Ubiquitin protein ligase RSP5/NEDD4 JGI ISS
PTHR11254Panther UBIQUITIN-PROTEIN LIGASE JGI ISS
PTHR11254:SF52Panther GUANINE NUCLEOTIDE EXCHANGE FACTOR P532 JGI ISS
PF00240PFAM Ubiquitin family JGI ISS
PF00632PFAM HECT-domain (ubiquitin-transferase) JGI ISS
UniRef100_G7JKJ3UniRef Annotation by Michelle Graham. Most informative UniRef hit: Ubiquitin n=1 Tax=Medicago truncatula RepID=G7JKJ3_MEDTR SoyBaseE_val: 0ISS
UniRef100_UPI000233908CUniRef Annotation by Michelle Graham. Best UniRef hit: UPI000233908C related cluster n=1 Tax=unknown RepID=UPI000233908C SoyBaseE_val: 0ISS

Expression Patterns of Glyma07g39546
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma07g39546 not represented in the dataset
Glyma07g39546 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma07g39546
ParalogEvidenceComments
Glyma17g01210 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma07g39546 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.07g265600 Wm82.a2.v1IGC As supplied by JGI

References for Glyma07g39546
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma07g39546
>Glyma07g39546.1   sequence type=CDS   gene model=Glyma07g39546   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTCTGTCATCGACACCCCCGCCGTTCACCACCGCAGCGGGGGCGCCACCGATCACCGTCACCCGTCCAAGCGCAAATTCGACGATGAAGACGACGAGGATTTCTCGGACTTAGTCTGCGTGAGGATGCGGAAAGACGAGGCCAAGGCGGTGAATTCCTGGTCCGCCTCCTCCTCCTCCTCCTCCTCCGACGCCGGCGGCTGCTCCTCCTTGCAGCAGCAGCAGCGATCGCACATCCAGTTCTTCGTGCGAATGATGTCTGCCGGAAACACGATTGTGATGCAAGCCTTCCCCGAAGACACGGTCAAATCGATTCACGAGCGTATCCAAAGCATGAAGGGAATCCCATTGTTCGAGCAGAGGTTAATTTATCGCGGGAAACAGCTCCAGTGGGAACAGACTCTTGCCGAGTGTTTCATTCAAAACGACGCCAACCTTCAATTAGTTGGCCGTATGCGCAGTACCGAACACCCTCAAGCCTGGCAAGTTATCAACGACATGGTTTCTCTCGTTTACCGTCTTTGCCGCGGCGAGACGGTTCACGATGCCTTGAAAACCGTCAAGGGTTTGATGACCAGTTACTTGAACATGACTCCCAGAATTGACAACGACTCTGCCTCTGGCTACTTTCAGATTTTCATGTCTTCTTCTGCCCCCGCTGTGCTTGTTATGCTCTATGTGTCCCCTTACGCAGGTAACAAGGACTGTGCTGATTCCTCTGTTAGACACTTTTTGAGTTCCTGTCGCAATATTTTGTCCAAGGCATTGCACGGCCAGTGTGCGCGTGTGGTGTTGGAGTTTTGTAAATTGCTTAGGAGAGTGGGGTCTCACGACCCTTTGTATCTCTTTTGTCGTAGTACTTTTGGGTCCTTGTTGGAAACTGCTGGAGTTTCCTATGGTTCCGGTTCGGATAATGTTAAGGGGCTGGTTTTGATTCAGGATATTTTCCCCTTTGTTTGTGAGCTTGCTAACAGCTTGTTGAGGGATCTGGACTTGAGTATTGTGTCCCCCTCGGCCGCAGGGCCTTTGTCAAACGATGTTGGGGATTTTTCTGCATTCTTACTGCCTTTGAGGACTGGAATTAAGGAGCAACAGGCTGTCAAGGATTCTATGGCTCAAGACAAACACCACAAGCTCACAGAAGAGATTGAATATCTTCATGGTTTGTACGTTCAGTTGTTGAACAAAATTGATCAGTGCCTTCAAAAAATGGACCAGAGTTTGGCTGGCCAGGAAATGATGGAGGGGGATAATCTTTATCCTGCTTGGTCTCATTATCTTTCCATCTTGAAGGAGTTGTATCAAATTTCAAAGCTTTATGATGGTGCTGAAGAAAAGCTTTGGGGTGTTTTGACGCGGCAAAGAAGTGTGCTATGTCTGCTGATAGTTCGATATGCGAAGAGAACTGATGAGCATCAGTGGATTCTGGAGCATAGGTATGTAACCAATTTTGAGTCTAGAAGGCATTTGGCCATGATGATGTTCCCAGAGGTAAAAGAGGACTATGAGGAGTTACATGAGATGCTTATTGACAGGTCTCAGTTATTGACTGAGTCTTTTGAATACATCGCACGTGCTGAGCCTGACTCCCTGCATGCTGGCCTGTTTATGGAATTCAAAAATGAGGAAGCTACTGGCCCAGGTGTATTAAGGGAGTGGTTTCTTCTGGTATGCCAAGCAATATTCAATCCACAAAATGCTCTTTTCGTCGCTTGCCCAAATGATCGAAGGAGATTTTTCCCTAATCCTGCATCTAAGGTACATCCTCTGCACCTTGAGTACTTCAGCTTCGCTGGTCGAGTTATTGCATTAGCTTTGATGCATAGGGTGCAAGTGGGTATTGTTTTTGATCGTGTGTTTTTCTTGCAATTGGCGGGAAACTATATTGCTATAGAAGATATAAGGGATGCAGATCCTTATCTGTATACTAGCTGCAAGCAAATATTGGATATGGATGCTGATTTCATTGATTCAGACTCATTAGGACTGACATTTGTTAGAGAGGTGGAAGAATTGGGACAGAGGAAAGTGGTTGAGCTCTGCCCTGGTGGAAAAAACCTTGTAGTTAATAGTAAGAACAGGGACAAGTATGTTGATCTTCTTATACAGGATCGCTTCGTAACATCCATATCTGAGCAGGTATCACATTTTGTCAAAGGTTTTGCAGATATTCTTTCAAACTCAAAGCTCCAGCAGTACTTCTTCCAAAGTTTAGACCTTGAAGATCTTGATTGGATGCTGCATGGGAGTGAAGATACCATTTCTGTTGAAGATTGGAAAGCGCACACTGAGTATAATGGCTATAAAGAGACAGATATTCAGATATCTTGGTTTTGGGAGATTGTTGGAAGAATGACAGCAGATCAAAGGAAGGTTCTTTTATTCTTTTGGACATCTGTAAAATATTTACCAGTTGAAGGTTTCCGTGGTTTGGCTTCCCGACTCTACATATACAGATCCCTTGAACCTGGTGATCGCCTGCCTTCATCTCACACATGCTTTTTCCGGCTGTGTTTCCCAGCTTATTCATCTATGGCTGTCATGAAAGATCGTCTTGAAGTCATCACTCAAGAACACATTGGCTGCAGTTTTGGTACTTGGTGA
Predicted protein sequences of Glyma07g39546
>Glyma07g39546.1   sequence type=predicted peptide   gene model=Glyma07g39546   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSVIDTPAVHHRSGGATDHRHPSKRKFDDEDDEDFSDLVCVRMRKDEAKAVNSWSASSSSSSSDAGGCSSLQQQQRSHIQFFVRMMSAGNTIVMQAFPEDTVKSIHERIQSMKGIPLFEQRLIYRGKQLQWEQTLAECFIQNDANLQLVGRMRSTEHPQAWQVINDMVSLVYRLCRGETVHDALKTVKGLMTSYLNMTPRIDNDSASGYFQIFMSSSAPAVLVMLYVSPYAGNKDCADSSVRHFLSSCRNILSKALHGQCARVVLEFCKLLRRVGSHDPLYLFCRSTFGSLLETAGVSYGSGSDNVKGLVLIQDIFPFVCELANSLLRDLDLSIVSPSAAGPLSNDVGDFSAFLLPLRTGIKEQQAVKDSMAQDKHHKLTEEIEYLHGLYVQLLNKIDQCLQKMDQSLAGQEMMEGDNLYPAWSHYLSILKELYQISKLYDGAEEKLWGVLTRQRSVLCLLIVRYAKRTDEHQWILEHRYVTNFESRRHLAMMMFPEVKEDYEELHEMLIDRSQLLTESFEYIARAEPDSLHAGLFMEFKNEEATGPGVLREWFLLVCQAIFNPQNALFVACPNDRRRFFPNPASKVHPLHLEYFSFAGRVIALALMHRVQVGIVFDRVFFLQLAGNYIAIEDIRDADPYLYTSCKQILDMDADFIDSDSLGLTFVREVEELGQRKVVELCPGGKNLVVNSKNRDKYVDLLIQDRFVTSISEQVSHFVKGFADILSNSKLQQYFFQSLDLEDLDWMLHGSEDTISVEDWKAHTEYNGYKETDIQISWFWEIVGRMTADQRKVLLFFWTSVKYLPVEGFRGLASRLYIYRSLEPGDRLPSSHTCFFRLCFPAYSSMAVMKDRLEVITQEHIGCSFGTW*






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