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Report for Sequence Feature Glyma07g39180
Feature Type: gene_model
Chromosome: Gm07
Start: 43733597
stop: 43736197
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma07g39180
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT1G62250 AT
Annotation by Michelle Graham. TAIR10: unknown protein; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; Has 30 Blast hits to 30 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 30; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr1:22995615-22997003 REVERSE LENGTH=267
SoyBase E_val: 2.00E-109 ISS
GO:0015996 GO-bp
Annotation by Michelle Graham. GO Biological Process: chlorophyll catabolic process
SoyBase N/A ISS
GO:0005739 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion
SoyBase N/A ISS
UniRef100_I1KNF1 UniRef
Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1KNF1_SOYBN
SoyBase E_val: 0 ISS
UniRef100_O04589 UniRef
Annotation by Michelle Graham. Most informative UniRef hit: F19K23.17 protein n=2 Tax=Arabidopsis thaliana RepID=O04589_ARATH
SoyBase E_val: 7.00E-107 ISS
Expression Patterns of Glyma07g39180
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE
Paralogs of Glyma07g39180
Paralog Evidence Comments
Glyma17g01560 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.
Gene model name correspondences to Glyma07g39180 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
Glyma.07g262000 Wm82.a2.v1 IGC As supplied by JGI
References for Glyma07g39180
Transcripts of Glyma07g39180
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma07g39180.5 sequence type=transcript gene model=Glyma07g39180 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
AGTTGAAACTTGAAAGCGATCGTTGGTAGCAGGAAACCATTCATATAATTCGTGGCTCCAATGAAGCCCCGTTTCAGAGATACTTTTCTCATTTTCTATTTCTATTTTGTGTATCAGCTAAGCTTAATATACCTTCACCAGGGATCAATACAATATAATGGTTCAAACATGCTAACGGTGTATGCTCCTAGAGCTATTCTGAAGTGTCATTTACACCAAGATTCAGCTTCTGCTCAACAAGCATATCCATGCAAGATCAATAATAATGCTAATTTGGTGAATTGTAATCCTAAACCTTTTGGCACTCCTTGTAGTAATATATTGTTTCATAGTTCCTCCTCTGGGAAATGTGATAAGCTACAAAAGAGCCTTCATCTATTCCATCATGTCGCCACACATAAATGGCTGTGTGGGTTACAGGATTCCATTTCATCTGATGATGAGTATCGTTCTTCCCGCAACATAGCCATCAGCTTGTTCAGGCGATACAGGAACTTCATTGATCGTGGTGGAGCCGACAATCTAAAAGAGTTCATCACTGCCGGGGTAAATGCATATGCACTAGGATGCACCGATGAAGGATTAAGGAAAGAACTTATGGATATGAAGAACTCTGGGATCGAAATTGATGTAATGCAAAGTTATGGTGGAAGCACAAGCTTAAAATCTAAGATAATCTCAGAGGAGGTTGATGAATGCATTCTCTGGTTAAGCATTATATTCATCACCATCTTGTGTACACCCCAACCAACTATTGTTAGATGGTCATCTACACCTCCAGTGTCAGATGAAGTTAGACTTCAGTGGAAAGGCTTTTGTGCCCTTATAGCAAATGCATATTTTATGAAGGGAATGGCTTGGCTTCCTGTAAAGACTCTTCAGTTAGAACAGACGGCTGTGATGGGTCAGGCTGAGAAACCGTCAGTTGTTGCTAGCAGAATGCGATTAATCTTTAGCACACTTGAGGTAGTGAGTCCACAGTGGCCAAGAGCATAGATAATGGGATCATTTTAAAACTGGCTCCCAACCATTTCACATTGAGTTGTATTCCATATTTGCTAACAGATGTAGCAATATCGTGCCAGAGAGGATATTAAAAAGGAAAAGAAAAAACTGGATTTCTATTTTGTATGTATGAAAATGAGATACATGATATATTGCAATTTTAGTGATATACTAAATTAGAGGAAGACTAATTATCAATTGGTCCAA
>Glyma07g39180.6 sequence type=transcript gene model=Glyma07g39180 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
AGTTGAAACTTGAAAGCGATCGTTGGTAGCAGGAAACCATTCATATAATTCGTGGCTCCAATGAAGCCCCGTTTCAGAGATACTTTTCTCATTTTCTATTTCTATTTTGTGTATCAGCTAAGCTTAATATACCTTCACCAGGGATCAATACAATATAATGGTTCAAACATGCTAACGGTGTATGCTCCTAGAGCTATTCTGAAGTGTCATTTACACCAAGATTCAGCTTCTGCTCAACAAGCATATCCATGCAAGATCAATAATAATGCTAATTTGGTGAATTGTAATCCTAAACCTTTTGGCACTCCTTGTAGTAATATATTGTTTCATAGTTCCTCCTCTGGGAAATGTGATAAGCTACAAAAGAGCCTTCATCTATTCCATCATGTCGCCACACATAAATGGCTGTGTGGGTTACAGGATTCCATTTCATCTGATGATGAGTATCGTTCTTCCCGCAACATAGCCATCAGCTTGTTCAGGCGATACAGGAACTTCATTGATCGTGGTGGAGCCGACAATCTAAAAGTATTTCCATTCACATGCTTCCTTTGCACCCTTTATTGGTTCTTTCAATTCTTTATGTCCCAATTACCAGATAGCGTTGTGTGTTTTCACTTTCAGGAGTTCATCACTGCCGGGGTAAATGCATATGCACTAGGATGCACCGATGAAGGATTAAGGAAAGAACTTATGGATATGAAGAACTCTGGGATCGAAATTGATGTAATGCAAAGTTATGGTGGAAGCACAAGCTTAAAATCTAAGATAATCTCAGAGGAGGTCAGTTCTAGTTTGGTTTTAAACCAGCTAATTCTAAGTCATGAATCATGATTATCACGATAACTTCTTTAAAGAATCAGCCTTAAGAAGATTGTAAATTGTTAGAGCTTGTTTGTGTAAAGGATGGGAGTTGATTTTCTCCCTTCTGTCCACCAGATTCATAAAGGCAGGCTTGCCTCTATATAAAGAGGCTCGTGTCTCAAGGAACGTTTGAATCCTTAGCATTATAGAAGCAAACAGTAACAGTAGTTATACCACTGATAGTTGTTAGTTAGCTTATTAGTTTGTTTACTCACTTTAGTTGTAATTGAATGGTACCATCTTAGCTGTCAGCTCTAGTTCCTGTTAATTAGATGTTTCCATGCTTCCTAAAATACACGTTCCCCTTTTATTATTGATCATATTAATCAATCAATAACAATGAGACTTTCCACTTCTGTGGAACAGCCTCTCTCCTCTATGAACAGTATGATGTGTGATCACACCAAGTTAGTATCACCTGCATCATCATCAATAACGTTTACTTTATTTTGTTGGTCAATTCTGCTAGATGTCAGTTGCTTTGTTCTATGCTGTCATGCAGGTTGATGAATGCATTCTCTGGTTAAGCATTATATTCATCACCATCTTGTGTACACCCCAACCAACTATTGTTAGATGGTCATCTACACCTCCAGTGTCAGATGAAGTTAGACTTCAGTGGAAAGGCTTTTGTGCCCTTATAGCAAATGCATATTTTATGAAGGGAATGGCTTGGTGAGATGCCATCCTTGCATCTTTTCTTTTCTTGATATGCTTCTAGTATTGCACCCCCACCCCCCC
Coding sequences of Glyma07g39180
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma07g39180.2 sequence type=CDS gene model=Glyma07g39180 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGCTAACGGTGTATGCTCCTAGAGCTATTCTGAAGTGTCATTTACACCAAGATTCAGCTTCTGCTCAACAAGCATATCCATGCAAGATCAATAATAATGCTAATTTGGTGAATTGTAATCCTAAACCTTTTGGCACTCCTTGTAGTAATATATTGTTTCATAGTTCCTCCTCTGGGAAATGTGATAAGCTACAAAAGAGCCTTCATCTATTCCATCATGTCGCCACACATAAATGGCTGTGTGGGTTACAGGATTCCATTTCATCTGATGATGAGTATCGTTCTTCCCGCAACATAGCCATCAGCTTGTTCAGGCGATACAGGAACTTCATTGATCGTGGTGGAGCCGACAATCTAAAAGAGTTCATCACTGCCGGGGTAAATGCATATGCACTAGGATGCACCGATGAAGGATTAAGGAAAGAACTTATGGATATGAAGAACTCTGGGATCGAAATTGATGTAATGCAAAGTTATGGTGGAAGCACAAGCTTAAAATCTAAGATAATCTCAGAGGAGGTTGATGAATGCATTCTCTGGTTAAGCATTATATTCATCACCATCTTGTGTACACCCCAACCAACTATTGTTAGATGGTCATCTACACCTCCAGTGTCAGATGAAGTTAGACTTCAGTGGAAAGGCTTTTGTGCCCTTATAGCAAATGCATATTTTATGAAGGGAATGGCTTGGCTTCCTGTAAAGACTCTTCAGTTAGAACAGACGGCTGTGATGGGTCAGGCTGAGAAACCGTCAGTTGTTGCTAGCAGAATGCGATTAATCTTTAGCACACTTGAGGTAGTGAGTCCACAGTGGCCAAGAGCATAG
>Glyma07g39180.5 sequence type=CDS gene model=Glyma07g39180 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGAAGCCCCGTTTCAGAGATACTTTTCTCATTTTCTATTTCTATTTTGTGTATCAGCTAAGCTTAATATACCTTCACCAGGGATCAATACAATATAATGGTTCAAACATGCTAACGGTGTATGCTCCTAGAGCTATTCTGAAGTGTCATTTACACCAAGATTCAGCTTCTGCTCAACAAGCATATCCATGCAAGATCAATAATAATGCTAATTTGGTGAATTGTAATCCTAAACCTTTTGGCACTCCTTGTAGTAATATATTGTTTCATAGTTCCTCCTCTGGGAAATGTGATAAGCTACAAAAGAGCCTTCATCTATTCCATCATGTCGCCACACATAAATGGCTGTGTGGGTTACAGGATTCCATTTCATCTGATGATGAGTATCGTTCTTCCCGCAACATAGCCATCAGCTTGTTCAGGCGATACAGGAACTTCATTGATCGTGGTGGAGCCGACAATCTAAAAGAGTTCATCACTGCCGGGGTAAATGCATATGCACTAGGATGCACCGATGAAGGATTAAGGAAAGAACTTATGGATATGAAGAACTCTGGGATCGAAATTGATGTAATGCAAAGTTATGGTGGAAGCACAAGCTTAAAATCTAAGATAATCTCAGAGGAGGTTGATGAATGCATTCTCTGGTTAAGCATTATATTCATCACCATCTTGTGTACACCCCAACCAACTATTGTTAGATGGTCATCTACACCTCCAGTGTCAGATGAAGTTAGACTTCAGTGGAAAGGCTTTTGTGCCCTTATAGCAAATGCATATTTTATGAAGGGAATGGCTTGGCTTCCTGTAAAGACTCTTCAGTTAGAACAGACGGCTGTGATGGGTCAGGCTGAGAAACCGTCAGTTGTTGCTAGCAGAATGCGATTAATCTTTAGCACACTTGAGGTAGTGAGTCCACAGTGGCCAAGAGCATAG
>Glyma07g39180.6 sequence type=CDS gene model=Glyma07g39180 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGAAGCCCCGTTTCAGAGATACTTTTCTCATTTTCTATTTCTATTTTGTGTATCAGCTAAGCTTAATATACCTTCACCAGGGATCAATACAATATAATGGTTCAAACATGCTAACGGTGTATGCTCCTAGAGCTATTCTGAAGTGTCATTTACACCAAGATTCAGCTTCTGCTCAACAAGCATATCCATGCAAGATCAATAATAATGCTAATTTGGTGAATTGTAATCCTAAACCTTTTGGCACTCCTTGTAGTAATATATTGTTTCATAGTTCCTCCTCTGGGAAATGTGATAAGCTACAAAAGAGCCTTCATCTATTCCATCATGTCGCCACACATAAATGGCTGTGTGGGTTACAGGATTCCATTTCATCTGATGATGAGTATCGTTCTTCCCGCAACATAGCCATCAGCTTGTTCAGGCGATACAGGAACTTCATTGATCGTGGTGGAGCCGACAATCTAAAAGTATTTCCATTCACATGCTTCCTTTGCACCCTTTATTGGTTCTTTCAATTCTTTATGTCCCAATTACCAGATAGCGTTGTGTGTTTTCACTTTCAGGAGTTCATCACTGCCGGGGTAAATGCATATGCACTAGGATGCACCGATGAAGGATTAAGGAAAGAACTTATGGATATGAAGAACTCTGGGATCGAAATTGATGTAATGCAAAGTTATGGTGGAAGCACAAGCTTAAAATCTAAGATAATCTCAGAGGAGGTCAGTTCTAGTTTGGTTTTAAACCAGCTAATTCTAAGTCATGAATCATGA
Predicted protein sequences of Glyma07g39180
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma07g39180.2 sequence type=predicted peptide gene model=Glyma07g39180 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MLTVYAPRAILKCHLHQDSASAQQAYPCKINNNANLVNCNPKPFGTPCSNILFHSSSSGKCDKLQKSLHLFHHVATHKWLCGLQDSISSDDEYRSSRNIAISLFRRYRNFIDRGGADNLKEFITAGVNAYALGCTDEGLRKELMDMKNSGIEIDVMQSYGGSTSLKSKIISEEVDECILWLSIIFITILCTPQPTIVRWSSTPPVSDEVRLQWKGFCALIANAYFMKGMAWLPVKTLQLEQTAVMGQAEKPSVVASRMRLIFSTLEVVSPQWPRA*
>Glyma07g39180.5 sequence type=predicted peptide gene model=Glyma07g39180 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MKPRFRDTFLIFYFYFVYQLSLIYLHQGSIQYNGSNMLTVYAPRAILKCHLHQDSASAQQAYPCKINNNANLVNCNPKPFGTPCSNILFHSSSSGKCDKLQKSLHLFHHVATHKWLCGLQDSISSDDEYRSSRNIAISLFRRYRNFIDRGGADNLKEFITAGVNAYALGCTDEGLRKELMDMKNSGIEIDVMQSYGGSTSLKSKIISEEVDECILWLSIIFITILCTPQPTIVRWSSTPPVSDEVRLQWKGFCALIANAYFMKGMAWLPVKTLQLEQTAVMGQAEKPSVVASRMRLIFSTLEVVSPQWPRA*
>Glyma07g39180.6 sequence type=predicted peptide gene model=Glyma07g39180 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MKPRFRDTFLIFYFYFVYQLSLIYLHQGSIQYNGSNMLTVYAPRAILKCHLHQDSASAQQAYPCKINNNANLVNCNPKPFGTPCSNILFHSSSSGKCDKLQKSLHLFHHVATHKWLCGLQDSISSDDEYRSSRNIAISLFRRYRNFIDRGGADNLKVFPFTCFLCTLYWFFQFFMSQLPDSVVCFHFQEFITAGVNAYALGCTDEGLRKELMDMKNSGIEIDVMQSYGGSTSLKSKIISEEVSSSLVLNQLILSHES*