SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT4G21990 | AT | Annotation by Michelle Graham. TAIR10: APS reductase 3 | chr4:11657284-11658973 REVERSE LENGTH=458 | SoyBase | E_val: 0 | ISS |
| GO:0000103 | GO-bp | Annotation by Michelle Graham. GO Biological Process: sulfate assimilation | SoyBase | N/A | ISS |
| GO:0008152 | GO-bp | Annotation by Michelle Graham. GO Biological Process: metabolic process | SoyBase | N/A | ISS |
| GO:0019419 | GO-bp | Annotation by Michelle Graham. GO Biological Process: sulfate reduction | SoyBase | N/A | ISS |
| GO:0045454 | GO-bp | Annotation by Michelle Graham. GO Biological Process: cell redox homeostasis | SoyBase | N/A | ISS |
| GO:0055114 | GO-bp | Annotation by Michelle Graham. GO Biological Process: oxidation-reduction process | SoyBase | N/A | ISS |
| GO:0009507 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: chloroplast | SoyBase | N/A | ISS |
| GO:0003824 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: catalytic activity | SoyBase | N/A | ISS |
| GO:0009973 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: adenylyl-sulfate reductase activity | SoyBase | N/A | ISS |
| GO:0016671 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor | SoyBase | N/A | ISS |
| KOG0189 | KOG | Phosphoadenosine phosphosulfate reductase | JGI | ISS | |
| PTHR18929 | Panther | PROTEIN DISULFIDE ISOMERASE | JGI | ISS | |
| PF00085 | PFAM | Thioredoxin | JGI | ISS | |
| PF01507 | PFAM | Phosphoadenosine phosphosulfate reductase family | JGI | ISS | |
| UniRef100_I1KNE4 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1KNE4_SOYBN | SoyBase | E_val: 0 | ISS |
| UniRef100_Q8W1A1 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Adenosine 5'-phosphosulfate reductase n=1 Tax=Glycine max RepID=Q8W1A1_SOYBN | SoyBase | E_val: 0 | ISS |
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Glyma07g39130 not represented in the dataset |
Glyma07g39130 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.07g261500 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma07g39130.1 sequence type=CDS gene model=Glyma07g39130 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGCCCTCGCTTTCACTTCTTCAATTTCCGCACCAACTTCCACCTTCCCATCATCGGAACCCAAACTTCCGCAAATTGGGTCAATTAGGATTTCGGAGAGGCCCATTGGAGGCGCCGTTAATTTCAATTTATCTCAAAGACGGAGCTTGGTAAAGCCCGTTAACGCCGAACCTCCACGCAAGGATTCCATTGTTCCTCTCGCAGCAACAACCATCGTTGCTTCTGCTTCTGAGACGAAAGAGGAAGATTTTGAACAGATAGCCAGTGATCTCGACAATGCTTCACCTCTTGAAATCATGGATAGAGCCCTCGACAAATTCGGCAACGACATAGCTATTGCCTTCAGTGGTGCTGAAGATGTTGCTTTGATTGAGTATGCGAAATTGACGGGTCGACCCTTTAGGGTTTTCAGTTTGGACACTGGGAGACTGAACCCAGAAACTTATCAACTTTTTGATGCGGTTGAGAAGCATTATGGAATTCGCATTGAGTACATGTTCCCTGATGCTGTTGAGGTTCAGGCATTGGTGAGGAGTAAGGGGTTATTCTCTTTCTACGAGGATGGGCACCAAGAGTGTTGCAGGGTGAGAAAGGTGAGGCCTTTAAGGAGGGCCCTTAAGGGTCTCAGAGCATGGATAACTGGTCAGAGGAAAGACCAGTCACCTGGTACTAGGTCTGAAATACCGGTTGTTCAGGTTGATCCGGTTTTTGAGGGAATGGATGGTGGAATTGGAAGCTTGGTGAAGTGGAACCCTGTTGCAAATGTGAAGGGCCATGACATATGGAACTTCCTTAGGACCATGAATGTGCCTGTGAATTCCTTGCATGCAAAAGGATATGTTTCCATTGGGTGTGAGCCCTGCACTAGGCCTGTTTTACCTGGGCAACATGAAAGGGAAGGGAGGTGGTGGTGGGAGGATGCCAAAGCTAAGGAATGTGGTCTTCACAAAGGAAATGTAAAGCAGCAGAAAGAGGAGGATGTTAATGGAAATGGGCTATCCCAATCCCATGCAAATGGTGATGCTACCACTGTGCCTGACATTTTCAACAGCCCGAATGTAGTTAACTTGAGCAGGACTGGAATTGAGAATTTGGCAAAATTGGAGGACCGAAAGGAACCATGGCTTGTTGTGCTTTATGCACCATGGTGCCCCTACTGCCAGGCTATGGAGGAATCTTATGTTGACTTAGCAGACAAGTTAGCAGGGTCAACAGGGATGAAGGTTGGAAAATTTAGAGCAGATGGAGAACAGAAAGAATTTGCAAAGAGTGAACTGCAATTGGGAAGCTTCCCTACGATATTATTTTTCCCAAAGCATTCGTCTCGGCCAACAATAAAGTATCCCTCAGAAAAGAGAGATGTTGATTCCTTGATGGCATTTGTAAATGCCTTAAGATGA
>Glyma07g39130.1 sequence type=predicted peptide gene model=Glyma07g39130 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MALAFTSSISAPTSTFPSSEPKLPQIGSIRISERPIGGAVNFNLSQRRSLVKPVNAEPPRKDSIVPLAATTIVASASETKEEDFEQIASDLDNASPLEIMDRALDKFGNDIAIAFSGAEDVALIEYAKLTGRPFRVFSLDTGRLNPETYQLFDAVEKHYGIRIEYMFPDAVEVQALVRSKGLFSFYEDGHQECCRVRKVRPLRRALKGLRAWITGQRKDQSPGTRSEIPVVQVDPVFEGMDGGIGSLVKWNPVANVKGHDIWNFLRTMNVPVNSLHAKGYVSIGCEPCTRPVLPGQHEREGRWWWEDAKAKECGLHKGNVKQQKEEDVNGNGLSQSHANGDATTVPDIFNSPNVVNLSRTGIENLAKLEDRKEPWLVVLYAPWCPYCQAMEESYVDLADKLAGSTGMKVGKFRADGEQKEFAKSELQLGSFPTILFFPKHSSRPTIKYPSEKRDVDSLMAFVNALR*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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