Glyma07g39070 - SoyBase

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Report for Sequence Feature Glyma07g39070

Feature Type:	gene_model
Chromosome:	Gm07
Start:	43665241
stop:	43677027
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma07g39070

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G05170	AT	Annotation by Michelle Graham. TAIR10: Galactosyltransferase family protein \| chr1:1491460-1493931 REVERSE LENGTH=404	SoyBase	E_val: 2.00E-173	ISS
GO:0006486	GO-bp	Annotation by Michelle Graham. GO Biological Process: protein glycosylation	SoyBase	N/A	ISS
GO:0005794	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: Golgi apparatus	SoyBase	N/A	ISS
GO:0016020	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: membrane	SoyBase	N/A	ISS
GO:0008378	GO-mf	Annotation by Michelle Graham. GO Molecular Function: galactosyltransferase activity	SoyBase	N/A	ISS
GO:0016757	GO-mf	Annotation by Michelle Graham. GO Molecular Function: transferase activity, transferring glycosyl groups	SoyBase	N/A	ISS
GO:0016758	GO-mf	Annotation by Michelle Graham. GO Molecular Function: transferase activity, transferring hexosyl groups	SoyBase	N/A	ISS
KOG2288	KOG	Galactosyltransferases	JGI		ISS
PTHR11214	Panther	BETA-1,3-N-ACETYLGLUCOSAMINYLTRANSFERASE	JGI		ISS
PTHR11214:SF5	Panther	gb def: b0024.3.p [caenorhabditis elegans]	JGI		ISS
PF01762	PFAM	Galactosyltransferase	JGI		ISS
UniRef100_A8MRC7-2	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Isoform 2 of Probable beta-1,3-galactosyltransferase 2 n=1 Tax=Arabidopsis thaliana RepID=A8MRC7-2	SoyBase	E_val: 1.00E-170	ISS
UniRef100_UPI0002339050	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI0002339050 related cluster n=1 Tax=unknown RepID=UPI0002339050	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma07g39070

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma07g39070

Paralog	Evidence	Comments
Glyma17g01660	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma07g39070 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.07g260800	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma07g39070

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma07g39070

Limit To All Plant Sequences

>Glyma07g39070.2   sequence type=CDS   gene model=Glyma07g39070   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTCTATGAAGAGCAAGGGAGCATGTGTAGAAGTGAGTGGAAGGAATGTCTTACATAGGAAATGGGCTCTTCTGCTTTGTGTGGCAAGCTTCTGTGCTGGAATGTTCTTTACCAATAGGATATGGTCGATGGCTGAATATAAAGAAATTTCGAGGGCTTCTACTGAGATTGAAAGAATAAAACTAAACTCTGAGGGCTGTAATCTAAATCTAGTTCTGGACCAATTATTTCAAAAGATTAGGAAAAAATATTTCATGGTTATAGGGATCAATACAGCTTTTAGTAGCAGGAAGCACAGAGATACTGTTCATGCAACTTGGATGCCACAAGTTGTGGAAAGAAAGAAGTTGGAGGAAGAAAAGGGCATAATCATACGATTGTTCTACATCTGGTGCATTCTTGACAAAGCTATTGAAGTAGAGGAGAGGCTTCATGCTGACTTTTTGAGGCTGAACCACATTGAGGGATACCTAGAACTATCAGCTAAGACAAAGATCTACTTTTCAATTGCTGTTGCCTTGTGGGATGCAGAATTTTATGTCAAAGTTGACGATGTTCATGTGAATTTAGCAACACTTGGATTGGCTCTGACTATGCATCGTAGGAAACCTCGGGTGTATATTGGGTGCATGAAATCTGGTCCTGTCCTTGCTCAGAAGGGAGTGAAATACCATGAACCAGAATACTGGAAGTTTGGAGAGGTGGGAAACAAGTACTTCCGTCATGCTACAGGACAATTATATGCCATTTCACAAGATTTGGCTGCTTATATATCGATAAATCAGGATGTGCTGCATAAATATGCTAATGAAGATGTCTCATTGGGATCTTGGTTTATTGGTTTGGATGTGGATCATGTTGATGATAGGAAAATGTGTTGTGGCACACCCCCTGAGTGGAAAGCGCAGGCTGGTAACATCTGTGTCGCCTCGTTTGATTGGAAATGCAGTGGGATCTGCAGATCTGTTGAGAGGATGAAAGAAGTTCACCAGCGTTGTGGGGAGGATGAAAACGCATTGTGGAGTGCAACCTTGTAA

Predicted protein sequences of Glyma07g39070

Limit To All Plant Sequences

>Glyma07g39070.2   sequence type=predicted peptide   gene model=Glyma07g39070   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSMKSKGACVEVSGRNVLHRKWALLLCVASFCAGMFFTNRIWSMAEYKEISRASTEIERIKLNSEGCNLNLVLDQLFQKIRKKYFMVIGINTAFSSRKHRDTVHATWMPQVVERKKLEEEKGIIIRLFYIWCILDKAIEVEERLHADFLRLNHIEGYLELSAKTKIYFSIAVALWDAEFYVKVDDVHVNLATLGLALTMHRRKPRVYIGCMKSGPVLAQKGVKYHEPEYWKFGEVGNKYFRHATGQLYAISQDLAAYISINQDVLHKYANEDVSLGSWFIGLDVDHVDDRKMCCGTPPEWKAQAGNICVASFDWKCSGICRSVERMKEVHQRCGEDENALWSATL*

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