SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT1G11720 | AT | Annotation by Michelle Graham. TAIR10: starch synthase 3 | chr1:3951597-3956840 FORWARD LENGTH=1094 | SoyBase | E_val: 0 | ISS |
| GO:0009058 | GO-bp | Annotation by Michelle Graham. GO Biological Process: biosynthetic process | SoyBase | N/A | ISS |
| GO:0009250 | GO-bp | Annotation by Michelle Graham. GO Biological Process: glucan biosynthetic process | SoyBase | N/A | ISS |
| GO:0019252 | GO-bp | Annotation by Michelle Graham. GO Biological Process: starch biosynthetic process | SoyBase | N/A | ISS |
| GO:0005739 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion | SoyBase | N/A | ISS |
| GO:0009507 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: chloroplast | SoyBase | N/A | ISS |
| GO:0009011 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: starch synthase activity | SoyBase | N/A | ISS |
| GO:0016757 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: transferase activity, transferring glycosyl groups | SoyBase | N/A | ISS |
| GO:2001070 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: starch binding | SoyBase | N/A | ISS |
| PTHR12526 | Panther | GLYCOSYLTRANSFERASE | JGI | ISS | |
| PTHR12526:SF17 | Panther | STARCH SYNTHASE | JGI | ISS | |
| PF00534 | PFAM | Glycosyl transferases group 1 | JGI | ISS | |
| PF03423 | PFAM | Carbohydrate binding domain (family 25) | JGI | ISS | |
| PF08323 | PFAM | Starch synthase catalytic domain | JGI | ISS | |
| UniRef100_A4F2M4 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Starch synthase III n=1 Tax=Phaseolus vulgaris RepID=A4F2M4_PHAVU | SoyBase | E_val: 0 | ISS |
| UniRef100_UPI000233904E | UniRef | Annotation by Michelle Graham. Best UniRef hit: UPI000233904E related cluster n=1 Tax=unknown RepID=UPI000233904E | SoyBase | E_val: 0 | ISS |
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Glyma07g39040 not represented in the dataset |
Glyma07g39040 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.07g260500 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma07g39040.2 sequence type=CDS gene model=Glyma07g39040 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGAGATGTCTTTGCAACTGAACTGCAAAACGACATTCGGCAATAGAAGTACTTTTTTTGGGTTTGGAGCTGGATTGTTCTTCCCTACCACTAGCCAATGCCACCGACTAGCTGGTTGGCGCTCTATTTGCATCAATGCCAGTGCAGATTTTTCAAGTAGAAGACAGAAGAGGATCTTTACTGCAAGGCCCAAGGGTCATGGTTCTGATTCAAAAAAGGGTTTGGTCCCAAGACCACCTATTGGAACACGCATAGTTGGAGAAGATGGAAATGTTTATACGAATGTTCCTGACACTTCCAACATTGGGAATGTTGAATATTTAGACGACAAATCATTAGACTATGCAGAAATTATTGGAATTATTAGAGAATCAGATGTTCATGGCACTTATAATGAAGTAACTGGGGAGACCATAGTCGAAGAAACAAATGATGATGATGATGATATAATAAAGGAAGAAGCTTCTCAACTGTTGCAGTTAAAGTTGAAAGAACGTTTACGCAGGCTCGAAATAGAGAGGATTGCACAGGAAAACTTGTCACTACGGAACAAGTTGTTTGTATATCCTCCTGTGGTTGAGCCAGGTCAAGATATTGAAGTGTTTCTTAATAGGAGTGTTTCAACTCTATGTAACGAGCCAAATGTTTTGATTAAGGGAGCATTTAATGATTGGAGGTGGAAATTTTTTACCATTGTATTAAATAAAACACACCTCCTCAATGGTGATTGGTGGTCTTGTCAGCTACATGTTCCAAGAGAAGCCTATAAAGTGGACTTTGTGTTCTACAATGGGCAAAATGTCTATGACAATAATGACAGAAGGGATTTCTCCATACCTGTTGATGGCGGAATGGATGTATTCGGATTTGAGGATTTCTTGCTTGAGGAAAAACGTAGAGAATTAGAAAGACTTGCTAAGGAGCAAGCTGAAAAGGAAGAACAGGAAAAAGAGAAAAGGAAAATGGAAGCAGAGAAAGCTGCAATAGAAGAGGACAGGTCACTGGCTAGGGTGGAGGTAGAAAGGAAGAGAGAAGTGTTGCGCCAGTTGACGAAAAATGCAGTGAAATCCATCGACAATGTTTGGTATATAGAGCCTAGTGAATTTGAAGGCAAAGACTTGGTCAGATTATATTATAACAGAACATCAGGTCCTCTTGCACAGACTCAGGAAGTATGGATTCATGGGGGGCACAATAATTGGATGGACAAATTATCAATTGTTGAAAGGCTTGTCAAAACTGGTTCAAAACATGGTGATTGGTGGCATGCTGATGTTGTTGTACCTGACCAAGCCGTTGTCCTGGATTGGGTCTTTGCTGATGGGCCACCTGGAAATGCAAGTTCGTATGATAACAACAATGTTCAAGACTTCCATGCTATTGTGACAAAGGTCATACCTGATGAAGAGACTTGGGTTTGGGAAGAGCGAACGATATTTAGAAAATTGCAGGAGAAGAGGAGGTTAAGAGAGGAAGCTATGCGTGCCAAGGTTGAAAAAACAGCATGTATAAAAGCTGAAGCAAAGAAAAAAACTTTAAAAAGATTTTTGCTTTCTCAAAAGCATATTGTCTACACTCAGCCTCTTCATATTCAAGCGGGGAGCACAGTGACTGTATTTTATAATCCTTGCAACACAAACCTAAATGGAAAACCAGAAGTTTGGTTTAGATGTTCATTTAATCGTTGGACTCATTGTAATGGTTCATTGCCACCTCAGAAAATGTTGCATACAAAGTATGGTACTTACGCCAAAGCCTTTGTTAAGGTTCCATTAGATGCATACATGATGGACTTTGTATTCTCTGAGAAAGAAGACGGTGGAATTATTGATAATAACAATAGAATGGATTATCACATACCTATTTTGGGTGGTATTGTAAAGGAAACGCCCATGCATATTGTCCATATTGCTGTTGAGATGGCCCCAATTGCAAAGGTTGGAGGCCTTGGTGATGTTGTTACTAGTCTATCACGAGCAGTTCAGGATTTAAATCACAATGTGGATGTTGTTCTTCCAAAGTATGACTGTTTGAATCTTAGCAATGTAAAAGATTTTCAATATCACAGAAACTATTTTTGGGGTGGGACTGAAATAAAAGTATGGCATGGAAAGGTGGAAGGTCTCTCTGTCTACTTCTTGGAACCTCAAAATGCATTCTTTCATGCTGGCTGTGTGTATGGTTGTGGGAATGATGCTCAGAGATTTGGTTTTTTTTGTCATGCTGCTCTTGAATTTCTACATCAAAATGGATTTCATCCGGATGTCATCCACTGCCATGATTGGTCGAGTGCGCCAGTTGCATGGCTATCTAAAGAACAGTATAGACATTGCGATTTAAGCAAAGCAGGGGTAGTGTTTACAATTCATAACCTTGAATTTGGAGCTCATTTCATTGGAAAAGCAATGGAATACACAGACAAGGCCACAACTGTCTCCCCATCTTATTCTAGGGAGGTTGCTGGGAATCCTGCAATTGCTCCTCATCTTCACAAGTTTCAGGGTATTATTAATGGAATTGATCCAGATATATGGGACCCATTTAACGATGAGTTCATTCCTGTATCATACACATCGGAATATGTTGTTGAAGGTAAAAAAGCTGCCAAGGAAGCCTTGCAACAAAGGCTTGGTTTGAGAAAAGCTGATCTTCCTTTATTGGGAGTTATTTCTCGATTGACTCATCAGAAAGGAATTCATCTCATCAAGCATGCTATAAGTCGCACCCTAGAGCGTGGCGGACAGGTTGTATTGCTTGGCTCAGCTCCAGATTCTAGTATCCAAAATGATTTTGTAAATTTGGCCAATCAATTGCATTCTCTTCATCATGACCGTGTTAGACTCTGTCTTGTGTATGATGAGCCTCTATCACACTTGATATATGCTGGTGCTGATTTCATTCTAGTTCCTTCAATCTTTGAGCCATGTGGTCTAACTCAACTGATAGCAATGAGATATGGTTCAGTACCTATTGTTCGAAAAACTGGAGGACTATACGATACTGTATTTGACGTTGAGCATGATAGGGATAGAGCACAAGCACAAGGTCTTGAACCAAATGGGTTCAGTTTTGATGGAGCTGATGCTTTAGGTGTTGATTATGCCCTCAATAGGGCAATATCAGCATGGTATGAGAATCGTCATTGGTTTAACACTTTATGCAAGACAGTGATGGAGCAAGACTGGTCTTGGAATCGCCCTGCACTTGATTATCTGGAGCTTTACCATGCTGCACGTAAGTCAGCATGA
>Glyma07g39040.2 sequence type=predicted peptide gene model=Glyma07g39040 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MEMSLQLNCKTTFGNRSTFFGFGAGLFFPTTSQCHRLAGWRSICINASADFSSRRQKRIFTARPKGHGSDSKKGLVPRPPIGTRIVGEDGNVYTNVPDTSNIGNVEYLDDKSLDYAEIIGIIRESDVHGTYNEVTGETIVEETNDDDDDIIKEEASQLLQLKLKERLRRLEIERIAQENLSLRNKLFVYPPVVEPGQDIEVFLNRSVSTLCNEPNVLIKGAFNDWRWKFFTIVLNKTHLLNGDWWSCQLHVPREAYKVDFVFYNGQNVYDNNDRRDFSIPVDGGMDVFGFEDFLLEEKRRELERLAKEQAEKEEQEKEKRKMEAEKAAIEEDRSLARVEVERKREVLRQLTKNAVKSIDNVWYIEPSEFEGKDLVRLYYNRTSGPLAQTQEVWIHGGHNNWMDKLSIVERLVKTGSKHGDWWHADVVVPDQAVVLDWVFADGPPGNASSYDNNNVQDFHAIVTKVIPDEETWVWEERTIFRKLQEKRRLREEAMRAKVEKTACIKAEAKKKTLKRFLLSQKHIVYTQPLHIQAGSTVTVFYNPCNTNLNGKPEVWFRCSFNRWTHCNGSLPPQKMLHTKYGTYAKAFVKVPLDAYMMDFVFSEKEDGGIIDNNNRMDYHIPILGGIVKETPMHIVHIAVEMAPIAKVGGLGDVVTSLSRAVQDLNHNVDVVLPKYDCLNLSNVKDFQYHRNYFWGGTEIKVWHGKVEGLSVYFLEPQNAFFHAGCVYGCGNDAQRFGFFCHAALEFLHQNGFHPDVIHCHDWSSAPVAWLSKEQYRHCDLSKAGVVFTIHNLEFGAHFIGKAMEYTDKATTVSPSYSREVAGNPAIAPHLHKFQGIINGIDPDIWDPFNDEFIPVSYTSEYVVEGKKAAKEALQQRLGLRKADLPLLGVISRLTHQKGIHLIKHAISRTLERGGQVVLLGSAPDSSIQNDFVNLANQLHSLHHDRVRLCLVYDEPLSHLIYAGADFILVPSIFEPCGLTQLIAMRYGSVPIVRKTGGLYDTVFDVEHDRDRAQAQGLEPNGFSFDGADALGVDYALNRAISAWYENRHWFNTLCKTVMEQDWSWNRPALDYLELYHAARKSA*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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