Glyma07g39020 - SoyBase

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Report for Sequence Feature Glyma07g39020

Feature Type:	gene_model
Chromosome:	Gm07
Start:	43621171
stop:	43623713
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma07g39020

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT4G21960	AT	Annotation by Michelle Graham. TAIR10: Peroxidase superfamily protein \| chr4:11646613-11648312 REVERSE LENGTH=330	SoyBase	E_val: 0	ISS
GO:0006833	GO-bp	Annotation by Michelle Graham. GO Biological Process: water transport	SoyBase	N/A	ISS
GO:0006979	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to oxidative stress	SoyBase	N/A	ISS
GO:0009651	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to salt stress	SoyBase	N/A	ISS
GO:0009750	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to fructose stimulus	SoyBase	N/A	ISS
GO:0019344	GO-bp	Annotation by Michelle Graham. GO Biological Process: cysteine biosynthetic process	SoyBase	N/A	ISS
GO:0019761	GO-bp	Annotation by Michelle Graham. GO Biological Process: glucosinolate biosynthetic process	SoyBase	N/A	ISS
GO:0030003	GO-bp	Annotation by Michelle Graham. GO Biological Process: cellular cation homeostasis	SoyBase	N/A	ISS
GO:0055114	GO-bp	Annotation by Michelle Graham. GO Biological Process: oxidation-reduction process	SoyBase	N/A	ISS
GO:0070838	GO-bp	Annotation by Michelle Graham. GO Biological Process: divalent metal ion transport	SoyBase	N/A	ISS
GO:0005576	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: extracellular region	SoyBase	N/A	ISS
GO:0004601	GO-mf	Annotation by Michelle Graham. GO Molecular Function: peroxidase activity	SoyBase	N/A	ISS
GO:0020037	GO-mf	Annotation by Michelle Graham. GO Molecular Function: heme binding	SoyBase	N/A	ISS
PF00141	PFAM	Peroxidase	JGI		ISS
UniRef100_Q9XFI6	UniRef	Annotation by Michelle Graham. Best UniRef hit: Peroxidase n=1 Tax=Glycine max RepID=Q9XFI6_SOYBN	SoyBase	E_val: 0	ISS
UniRef100_Q9XFI6	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Peroxidase n=1 Tax=Glycine max RepID=Q9XFI6_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma07g39020

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma07g39020

Paralog	Evidence	Comments
Glyma17g01720	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma07g39020 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.07g260300	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma07g39020

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma07g39020

Limit To All Plant Sequences

>Glyma07g39020.1   sequence type=CDS   gene model=Glyma07g39020   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCTCCCAAGGGTTTAACCTTTCTGGCTGTGTTAATATGCGTTTCAGCACTGTCACTGAGTCCTTCTGTTGCGGGGGAAGGGCAAAATAATGGCCTTGTTATGAACTTCTACAAGGAATCATGCCCTCAGGCTGAAGACATCATCACAGAACAAGTCAAGCTTCTCTACAAGCGCCACAAGAACACTGCTTTCTCCTGGCTCAGGAACATCTTCCATGACTGTGCTGTTCAGAGTTGTGATGCTTCACTGTTGCTGGACTCCACAAGAAGGAGCTTGTCTGAGAAGGAAACAGATAGAAGCTTTGGGTTGAGAAATTTCAGGTACATTGAGACCATCAAAGAAGCTTTGGAAAGAGAATGCCCTGGAGTTGTTTCATGTGCTGATATCCTCGTTCTCTCTGCCAGAGATGGCATTGTTTCGCTAGGAGGTCCCCATATCCCTCTTAAGACTGGAAGAAGGGATGGTAGAAGGAGCAGAGCTGATGTGGTTGAGCAGTTCCTCCCAGACCACAATGAGTCCATTTCTGCAGTTCTTGACAAGTTTGGTGCCATGGGAATTGACACCCCTGGCGTCGTTGCACTGCTTGGAGCACACAGTGTTGGTCGAACCCATTGTGTGAAGTTGGTGCACCGTTTGTACCCAGAGATTGATCCAGCTCTGAACCCTGACCACGTCCCTCACATTCTGAAGAAGTGCCCTGATGCCATTCCAGACCCTAAGGCGGTGCAGTACGTGAGAAACGACCGTGGCACTCCCATGATTCTAGACAACAACTACTACAGAAACATATTAGACAGCAAGGGTCTCTTGATAGTGGATCACCAACTAGCCAATGACAAGAGGACCAAGCCTTATGTGAAGAAAATGGCCAAGAGCCAAGACTATTTCTTCAAGGAGTTCTCTAGAGCCATTACCTTGCTCTCAGAGAACAACCCTCTCACTGGCACAAAGGGTGAGGTCAGAAAGCAGTGCAATGTTGCCAACAAGCACCATGATCAGGACCCTTGA

Predicted protein sequences of Glyma07g39020

Limit To All Plant Sequences

>Glyma07g39020.1   sequence type=predicted peptide   gene model=Glyma07g39020   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAPKGLTFLAVLICVSALSLSPSVAGEGQNNGLVMNFYKESCPQAEDIITEQVKLLYKRHKNTAFSWLRNIFHDCAVQSCDASLLLDSTRRSLSEKETDRSFGLRNFRYIETIKEALERECPGVVSCADILVLSARDGIVSLGGPHIPLKTGRRDGRRSRADVVEQFLPDHNESISAVLDKFGAMGIDTPGVVALLGAHSVGRTHCVKLVHRLYPEIDPALNPDHVPHILKKCPDAIPDPKAVQYVRNDRGTPMILDNNYYRNILDSKGLLIVDHQLANDKRTKPYVKKMAKSQDYFFKEFSRAITLLSENNPLTGTKGEVRKQCNVANKHHDQDP*

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