SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
|
A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT4G04720 | AT | Annotation by Michelle Graham. TAIR10: calcium-dependent protein kinase 21 | chr4:2394817-2397631 REVERSE LENGTH=531 | SoyBase | E_val: 0 | ISS |
| GO:0006468 | GO-bp | Annotation by Michelle Graham. GO Biological Process: protein phosphorylation | SoyBase | N/A | ISS |
| GO:0006499 | GO-bp | Annotation by Michelle Graham. GO Biological Process: N-terminal protein myristoylation | SoyBase | N/A | ISS |
| GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
| GO:0005886 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane | SoyBase | N/A | ISS |
| GO:0009506 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: plasmodesma | SoyBase | N/A | ISS |
| GO:0004672 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: protein kinase activity | SoyBase | N/A | ISS |
| GO:0004674 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: protein serine/threonine kinase activity | SoyBase | N/A | ISS |
| GO:0004683 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: calmodulin-dependent protein kinase activity | SoyBase | N/A | ISS |
| GO:0005509 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: calcium ion binding | SoyBase | N/A | ISS |
| GO:0005515 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: protein binding | SoyBase | N/A | ISS |
| GO:0005524 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: ATP binding | SoyBase | N/A | ISS |
| GO:0016301 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: kinase activity | SoyBase | N/A | ISS |
| GO:0016772 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: transferase activity, transferring phosphorus-containing groups | SoyBase | N/A | ISS |
| GO:0019903 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: protein phosphatase binding | SoyBase | N/A | ISS |
| KOG0032 | KOG | Ca2+/calmodulin-dependent protein kinase, EF-Hand protein superfamily | JGI | ISS | |
| PTHR24347 | Panther | FAMILY NOT NAMED | JGI | ISS | |
| PTHR24347:SF13 | Panther | CALCIUM/CALMODULIN-DEPENDENT PROTEIN KINASE TYPE I | JGI | ISS | |
| PF00036 | PFAM | EF hand | JGI | ISS | |
| PF00069 | PFAM | Protein kinase domain | JGI | ISS | |
| UniRef100_G7JJ67 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Calcium-dependent protein kinase n=1 Tax=Medicago truncatula RepID=G7JJ67_MEDTR | SoyBase | E_val: 0 | ISS |
| UniRef100_UPI00018C6CBA | UniRef | Annotation by Michelle Graham. Best UniRef hit: UPI00018C6CBA related cluster n=1 Tax=unknown RepID=UPI00018C6CBA | SoyBase | E_val: 0 | ISS |
|
Glyma07g39010 not represented in the dataset |
Glyma07g39010 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma17g01730 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.07g260200 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma07g39010.1 sequence type=CDS gene model=Glyma07g39010 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGGTTGTCATGGTAGCAAGGAGAAAAAATCAAACACTTCCTATGGATCAGCAGCCACTGGTAGTGGTAGTGGTAGTGGCAGTGGTGGTGGTTACAACACTGTTCAGCCATCACCACCTACTACCGATCAGGTTCAAGCATCAGCACAGACTCCAGAAAACCGAAAAGCTTCTCCTACAGTGCAGAAGAAAGCAGACACAAGCATCGTGGGGAAACCCTTTGACGACATAAAGAAATACTACAGTATAGGGAAGGAATTGGGAAGGGGCCAATTCGGGATAACGTATCTGTGCACGGAGAATTCGAGCGGGGGGACGTACGCGTGCAAGTCGATACTGAAGAGGAAGCTGGTCTCGAAGGCGGACAGGGAGGACATGAAGAGGGAGATTCAGATCATGCAGCATTTGTCGGGGCAACCCAACATTGTCGAGTTCAAGGGCGCCTTCGAGGACCGCTTCTCCGTTCACCTCGTCATGGAACTCTGCTCCGGCGGGGAGCTCTTCGATCGTATCATCGCCCAGGGTCACTACTCCGAGAGAGCCGCTGCCTCTCTCTGCCGCTCCATCGTCAACGTTGTCCACATTTGCCACTTCATGGGCGTCATGCACCGCGATCTCAAGCCCGAGAATTTCTTGCTCTCTACCAAGGACGACCACGCCACCCTCAAGGCTACTGATTTTGGTCTCTCTGTCTTCATTGAACAAGGGAAGGTTTACCATGATATGGTTGGCAGTGCTTACTATGTTGCTCCTGAGGTATTGCGTCGTAGTTATGGAAAGGAAATAGATATTTGGAGCGCAGGCATCATATTGTATATTCTTCTGAGTGGTGTACCGCCTTTTTGGGCTGAAACTGAAAAGGGAATATTTAACGCCATATTGGAAGGTGAAATTGATTTTGTAAGTGAACCATGGCCATCGATATCAGACAGTGCTAAAGATCTAGTCAGGAAGATGCTGACACAGGATCCAAAGAAGCGGATTACTTCTGCTCAAGTTCTTGAACACCCATGGATGAGAGAAGGTGGAGACGCATCTGATAAACCAATCGATAGTGCAGTTCTATCCAGAATGAAACAATTCAGGGCAATGAATAAGCTCAAGAAGCTAGCATTGAAGGTTATCGCTGAAAATCTATCAGAAGAGGAGATTAAAGGTCTCAAAGCAATGTTTGCCAATATGGACACTGACAGTAGTGGCACCATCACCTATGAAGAACTGAAGACTGGCTTGGCTCGAATCGGATCAAGACTATCCGAGGCTGAAGTGAAGCAACTCATGGATGCTGCTGATGTTGATGGAAATGGGTCAATTGACTATCTTGAATTCATTTCTGCTACAATGCATAGGCACAGACTTGAACGTGATGAACATCTTTACAAAGCATTCCAGTATTTTGATAAGGATAACAGTGGATATATTACTAGAGATGAATTGGAGACTGCTATGACCCAACATGGAATGGGTGATGAAGCAACAATAAAGGAAATAATCTCTGAGGTGGATACAGATAATGATGGGAGAATAAACTATGAGGAGTTCTGTGCAATGATGAGAAGTGGAATGCCACACCAGGGACAGCTACTTTAA
>Glyma07g39010.1 sequence type=predicted peptide gene model=Glyma07g39010 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MGCHGSKEKKSNTSYGSAATGSGSGSGSGGGYNTVQPSPPTTDQVQASAQTPENRKASPTVQKKADTSIVGKPFDDIKKYYSIGKELGRGQFGITYLCTENSSGGTYACKSILKRKLVSKADREDMKREIQIMQHLSGQPNIVEFKGAFEDRFSVHLVMELCSGGELFDRIIAQGHYSERAAASLCRSIVNVVHICHFMGVMHRDLKPENFLLSTKDDHATLKATDFGLSVFIEQGKVYHDMVGSAYYVAPEVLRRSYGKEIDIWSAGIILYILLSGVPPFWAETEKGIFNAILEGEIDFVSEPWPSISDSAKDLVRKMLTQDPKKRITSAQVLEHPWMREGGDASDKPIDSAVLSRMKQFRAMNKLKKLALKVIAENLSEEEIKGLKAMFANMDTDSSGTITYEELKTGLARIGSRLSEAEVKQLMDAADVDGNGSIDYLEFISATMHRHRLERDEHLYKAFQYFDKDNSGYITRDELETAMTQHGMGDEATIKEIISEVDTDNDGRINYEEFCAMMRSGMPHQGQLL*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
|
|
|
