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Report for Sequence Feature Glyma07g38820

Feature Type:gene_model
Chromosome:Gm07
Start:43478271
stop:43484998
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT5G19220AT Annotation by Michelle Graham. TAIR10: ADP glucose pyrophosphorylase large subunit 1 | chr5:6463931-6466775 REVERSE LENGTH=522 SoyBaseE_val: 0ISS
GO:0005978GO-bp Annotation by Michelle Graham. GO Biological Process: glycogen biosynthetic process SoyBaseN/AISS
GO:0006098GO-bp Annotation by Michelle Graham. GO Biological Process: pentose-phosphate shunt SoyBaseN/AISS
GO:0006364GO-bp Annotation by Michelle Graham. GO Biological Process: rRNA processing SoyBaseN/AISS
GO:0009058GO-bp Annotation by Michelle Graham. GO Biological Process: biosynthetic process SoyBaseN/AISS
GO:0009637GO-bp Annotation by Michelle Graham. GO Biological Process: response to blue light SoyBaseN/AISS
GO:0009902GO-bp Annotation by Michelle Graham. GO Biological Process: chloroplast relocation SoyBaseN/AISS
GO:0010027GO-bp Annotation by Michelle Graham. GO Biological Process: thylakoid membrane organization SoyBaseN/AISS
GO:0010114GO-bp Annotation by Michelle Graham. GO Biological Process: response to red light SoyBaseN/AISS
GO:0010218GO-bp Annotation by Michelle Graham. GO Biological Process: response to far red light SoyBaseN/AISS
GO:0015979GO-bp Annotation by Michelle Graham. GO Biological Process: photosynthesis SoyBaseN/AISS
GO:0019684GO-bp Annotation by Michelle Graham. GO Biological Process: photosynthesis, light reaction SoyBaseN/AISS
GO:0030244GO-bp Annotation by Michelle Graham. GO Biological Process: cellulose biosynthetic process SoyBaseN/AISS
GO:0034660GO-bp Annotation by Michelle Graham. GO Biological Process: ncRNA metabolic process SoyBaseN/AISS
GO:0009507GO-cc Annotation by Michelle Graham. GO Cellular Compartment: chloroplast SoyBaseN/AISS
GO:0009570GO-cc Annotation by Michelle Graham. GO Cellular Compartment: chloroplast stroma SoyBaseN/AISS
GO:0009941GO-cc Annotation by Michelle Graham. GO Cellular Compartment: chloroplast envelope SoyBaseN/AISS
GO:0008878GO-mf Annotation by Michelle Graham. GO Molecular Function: glucose-1-phosphate adenylyltransferase activity SoyBaseN/AISS
GO:0016779GO-mf Annotation by Michelle Graham. GO Molecular Function: nucleotidyltransferase activity SoyBaseN/AISS
KOG1322 KOG GDP-mannose pyrophosphorylase/mannose-1-phosphate guanylyltransferase JGI ISS
PTHR22572Panther SUGAR-1-PHOSPHATE GUANYL TRANSFERASE JGI ISS
PTHR22572:SF10Panther GLUCOSE-1-PHOSPHATE ADENYLYLTRANSFERASE JGI ISS
PF00483PFAM Nucleotidyl transferase JGI ISS
UniRef100_C6TE56UniRef Annotation by Michelle Graham. Best UniRef hit: Glucose-1-phosphate adenylyltransferase n=1 Tax=Glycine max RepID=C6TE56_SOYBN SoyBaseE_val: 0ISS
UniRef100_C6TE56UniRef Annotation by Michelle Graham. Most informative UniRef hit: Glucose-1-phosphate adenylyltransferase n=1 Tax=Glycine max RepID=C6TE56_SOYBN SoyBaseE_val: 0ISS

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma07g38820 not represented in the dataset

Glyma07g38820 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection
Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

ParalogEvidenceComments
Glyma17g01900 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Corresponding NameAnnotation VersionEvidenceComments
Glyma.07g258500 Wm82.a2.v1IGC As supplied by JGI

Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

>Glyma07g38820.2   sequence type=transcript   gene model=Glyma07g38820   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
GTTGAATTTGGATAACGTGGCTCACTCCTCCAAAATACCCGGATATGCATGTAAGCAAATCTGTACATAGTACATACACTACACATAGGTCGTTGCTTCTGCTTCTTGTGTAGGACATTAAAACACACACAAGTACATAAATTCCGATTTTCTCCCTGGAAAAATGGCAGCCTCTGCCGGCGGCCAGATAACTCTCTCGTCAACCGTCCAGTTACATGGAGTGACTTGTAATAGGAATTGGAAGCTTGTGAAGTTCTGTAATGGGGAAGTCATGGGACGTAAGCTTTTGTTAAAAAATGGTGGTGGCAGCACTAAGGATTTTAAGCGCCAACAACAACATATATGCATGTCTCTCACCGCTGATGTGTCCACTGAATCTAAGTTGAGAGACCTAGATATGGAAAGAAGGAACCCAAGGACAGTGTTGGCAGTTATACTAGGTGGAGGAGCTGGAACCCGTCTCTTCCCTCTTACTAAGCGACGAGCCAAACCTGCTGTTCCTATTGGAGGAGCTTACAGGCTCATTGATGTGCCAATGAGTAACTGCATCAACAGTGGTATCAACAAGGTGTATATCCTCACCCAGTTTAACTCTGCCTCACTCAACAGGCACATTGCACGCGCTTACAACTCTGGTAATGGAGTCACCTTTGGAGATGGCTATGTAGAGGTTCTTGCAGCAACCCAAACTCCAGGGGAGGCAGGTAAAAAGTGGTTTCAAGGTACTGCTGATGCTGTGAGGCAGTTCCACTGGCTCTTTGAGGATCCAAGAAGTAAGGATATTGAGGATGTCTTGATTCTTTCCGGGGATCACCTCTACCGAATGGACTATATGGACTTTGTTCAAAATCATCGGGAGAGTGGTGCAGATATCACTCTTTCTTGTCTTCCAATGGATGACAGCCGTGCCTCTGATTTTGGTCTAATGAAGATAGACAATAAAGGAAGGGTCCTTTCGTTTAGTGAAAAACCCAAAGGAGAAGAGCTGAAAGCAATGCAAGTAGATACAACCGTTTTGGGCCTTTCAAAGGACGAGGCTCAAAAGAAACCATACATTGCTTCCATGGGAGTGTACGTCTTCAAGAAGGAGATACTTCTTAATCTATTGAGATGGCGCTTTCCAACGGCTAATGACTTTGGATCAGAGGTTATTCCTGCCTCAGCCAGAGAATTTTACATGAAGGCTTATCTATTCAATGATTACTGGGAAGACATAGGTACTATCAGATCATTCTTTGAGGCAAATCTTGCCCTCACTGAGCATCCACCCAGGTTTAGCTTTTATGATGCAGCCAAACCAATGTATACATCACGGAGAAACTTACCACCATCAAAGATTGACAATAGCAAGATTGTTGATTCAATTATATCACATGGAAGCTTCTTGAATAATTCCTTCATAGAGCACAGTGTTGTTGGAATCAGATCCAGAATAAACTCAAATATTCACTTAAAGGATACAGTGATGCTTGGTGCTGATTATTATGAAACCGATGCAGAAGTGGCAGCACTCTTAGCTGAAGGAAGAGTTCCAATTGGAATAGGAGAAAATACAAAAATCAAGTATGAATTGCAATTCTCACTCTCCTAATCACTACTTTATCTCACTTTGCTCACTTCTCACATTTCTGCAGGGACTGTATTATTGACAAAAACGCTAGAATCGGAAAGAATGTTGTAATAGCAAACTCAGAGGGTATACAAGAGGCTGATAGATCTTCGGAAGGGTTTTACATCCGTTCTGGGGTTACCATTGTATTGAAAAACTCAGTAATTGAAGATGGATTCATCATATAATAAATTCACCCGTGATTTGTTTGCCCCGTTTTGCCATGAGCGGATGGGAATGTTTTGACCTTCATGAATTATGTTTTTTTTAGTAAAAAAAGGCATTAAATGTCAATGTGTTGCCGAAATGGATAGAGATAAGTTCACATATGATACATATCATATTCCAAATCAATTACATTTTTTATACAGTAAGTGTTAAAC

>Glyma07g38820.1   sequence type=CDS   gene model=Glyma07g38820   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCAGCCTCTGCCGGCGGCCAGATAACTCTCTCGTCAACCGTCCAGTTACATGGAGTGACTTGTAATAGGAATTGGAAGCTTGTGAAGTTCTGTAATGGGGAAGTCATGGGACGTAAGCTTTTGTTAAAAAATGGTGGTGGCAGCACTAAGGATTTTAAGCGCCAACAACAACATATATGCATGTCTCTCACCGCTGATGTGTCCACTGAATCTAAGTTGAGAGACCTAGATATGGAAAGAAGGAACCCAAGGACAGTGTTGGCAGTTATACTAGGTGGAGGAGCTGGAACCCGTCTCTTCCCTCTTACTAAGCGACGAGCCAAACCTGCTGTTCCTATTGGAGGAGCTTACAGGCTCATTGATGTGCCAATGAGTAACTGCATCAACAGTGGTATCAACAAGGTGTATATCCTCACCCAGTTTAACTCTGCCTCACTCAACAGGCACATTGCACGCGCTTACAACTCTGGTAATGGAGTCACCTTTGGAGATGGCTATGTAGAGGTTCTTGCAGCAACCCAAACTCCAGGGGAGGCAGGTAAAAAGTGGTTTCAAGGTACTGCTGATGCTGTGAGGCAGTTCCACTGGCTCTTTGAGGATCCAAGAAGTAAGGATATTGAGGATGTCTTGATTCTTTCCGGGGATCACCTCTACCGAATGGACTATATGGACTTTGTTCAAAATCATCGGGAGAGTGGTGCAGATATCACTCTTTCTTGTCTTCCAATGGATGACAGCCGTGCCTCTGATTTTGGTCTAATGAAGATAGACAATAAAGGAAGGGTCCTTTCGTTTAGTGAAAAACCCAAAGGAGAAGAGCTGAAAGCAATGCAAGTAGATACAACCGTTTTGGGCCTTTCAAAGGACGAGGCTCAAAAGAAACCATACATTGCTTCCATGGGAGTGTACGTCTTCAAGAAGGAGATACTTCTTAATCTATTGAGATGGCGCTTTCCAACGGCTAATGACTTTGGATCAGAGGTTATTCCTGCCTCAGCCAGAGAATTTTACATGAAGGCTTATCTATTCAATGATTACTGGGAAGACATAGGTACTATCAGATCATTCTTTGAGGCAAATCTTGCCCTCACTGAGCATCCACCCAGGTTTAGCTTTTATGATGCAGCCAAACCAATGTATACATCACGGAGAAACTTACCACCATCAAAGATTGACAATAGCAAGATTGTTGATTCAATTATATCACATGGAAGCTTCTTGAATAATTCCTTCATAGAGCACAGTGTTGTTGGAATCAGATCCAGAATAAACTCAAATATTCACTTAAAGGATACAGTGATGCTTGGTGCTGATTATTATGAAACCGATGCAGAAGTGGCAGCACTCTTAGCTGAAGGAAGAGTTCCAATTGGAATAGGAGAAAATACAAAAATCAAGGACTGTATTATTGACAAAAACGCTAGAATCGGAAAGAATGTTGTAATAGCAAACTCAGAGGGTATACAAGAGGCTGATAGATCTTCGGAAGGGTTTTACATCCGTTCTGGGGTTACCATTGTATTGAAAAACTCAGTAATTGAAGATGGATTCATCATATAA

>Glyma07g38820.2   sequence type=CDS   gene model=Glyma07g38820   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCAGCCTCTGCCGGCGGCCAGATAACTCTCTCGTCAACCGTCCAGTTACATGGAGTGACTTGTAATAGGAATTGGAAGCTTGTGAAGTTCTGTAATGGGGAAGTCATGGGACGTAAGCTTTTGTTAAAAAATGGTGGTGGCAGCACTAAGGATTTTAAGCGCCAACAACAACATATATGCATGTCTCTCACCGCTGATGTGTCCACTGAATCTAAGTTGAGAGACCTAGATATGGAAAGAAGGAACCCAAGGACAGTGTTGGCAGTTATACTAGGTGGAGGAGCTGGAACCCGTCTCTTCCCTCTTACTAAGCGACGAGCCAAACCTGCTGTTCCTATTGGAGGAGCTTACAGGCTCATTGATGTGCCAATGAGTAACTGCATCAACAGTGGTATCAACAAGGTGTATATCCTCACCCAGTTTAACTCTGCCTCACTCAACAGGCACATTGCACGCGCTTACAACTCTGGTAATGGAGTCACCTTTGGAGATGGCTATGTAGAGGTTCTTGCAGCAACCCAAACTCCAGGGGAGGCAGGTAAAAAGTGGTTTCAAGGTACTGCTGATGCTGTGAGGCAGTTCCACTGGCTCTTTGAGGATCCAAGAAGTAAGGATATTGAGGATGTCTTGATTCTTTCCGGGGATCACCTCTACCGAATGGACTATATGGACTTTGTTCAAAATCATCGGGAGAGTGGTGCAGATATCACTCTTTCTTGTCTTCCAATGGATGACAGCCGTGCCTCTGATTTTGGTCTAATGAAGATAGACAATAAAGGAAGGGTCCTTTCGTTTAGTGAAAAACCCAAAGGAGAAGAGCTGAAAGCAATGCAAGTAGATACAACCGTTTTGGGCCTTTCAAAGGACGAGGCTCAAAAGAAACCATACATTGCTTCCATGGGAGTGTACGTCTTCAAGAAGGAGATACTTCTTAATCTATTGAGATGGCGCTTTCCAACGGCTAATGACTTTGGATCAGAGGTTATTCCTGCCTCAGCCAGAGAATTTTACATGAAGGCTTATCTATTCAATGATTACTGGGAAGACATAGGTACTATCAGATCATTCTTTGAGGCAAATCTTGCCCTCACTGAGCATCCACCCAGGTTTAGCTTTTATGATGCAGCCAAACCAATGTATACATCACGGAGAAACTTACCACCATCAAAGATTGACAATAGCAAGATTGTTGATTCAATTATATCACATGGAAGCTTCTTGAATAATTCCTTCATAGAGCACAGTGTTGTTGGAATCAGATCCAGAATAAACTCAAATATTCACTTAAAGGATACAGTGATGCTTGGTGCTGATTATTATGAAACCGATGCAGAAGTGGCAGCACTCTTAGCTGAAGGAAGAGTTCCAATTGGAATAGGAGAAAATACAAAAATCAAGTATGAATTGCAATTCTCACTCTCCTAA

>Glyma07g38820.1   sequence type=predicted peptide   gene model=Glyma07g38820   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAASAGGQITLSSTVQLHGVTCNRNWKLVKFCNGEVMGRKLLLKNGGGSTKDFKRQQQHICMSLTADVSTESKLRDLDMERRNPRTVLAVILGGGAGTRLFPLTKRRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQFNSASLNRHIARAYNSGNGVTFGDGYVEVLAATQTPGEAGKKWFQGTADAVRQFHWLFEDPRSKDIEDVLILSGDHLYRMDYMDFVQNHRESGADITLSCLPMDDSRASDFGLMKIDNKGRVLSFSEKPKGEELKAMQVDTTVLGLSKDEAQKKPYIASMGVYVFKKEILLNLLRWRFPTANDFGSEVIPASAREFYMKAYLFNDYWEDIGTIRSFFEANLALTEHPPRFSFYDAAKPMYTSRRNLPPSKIDNSKIVDSIISHGSFLNNSFIEHSVVGIRSRINSNIHLKDTVMLGADYYETDAEVAALLAEGRVPIGIGENTKIKDCIIDKNARIGKNVVIANSEGIQEADRSSEGFYIRSGVTIVLKNSVIEDGFII*

>Glyma07g38820.2   sequence type=predicted peptide   gene model=Glyma07g38820   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAASAGGQITLSSTVQLHGVTCNRNWKLVKFCNGEVMGRKLLLKNGGGSTKDFKRQQQHICMSLTADVSTESKLRDLDMERRNPRTVLAVILGGGAGTRLFPLTKRRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQFNSASLNRHIARAYNSGNGVTFGDGYVEVLAATQTPGEAGKKWFQGTADAVRQFHWLFEDPRSKDIEDVLILSGDHLYRMDYMDFVQNHRESGADITLSCLPMDDSRASDFGLMKIDNKGRVLSFSEKPKGEELKAMQVDTTVLGLSKDEAQKKPYIASMGVYVFKKEILLNLLRWRFPTANDFGSEVIPASAREFYMKAYLFNDYWEDIGTIRSFFEANLALTEHPPRFSFYDAAKPMYTSRRNLPPSKIDNSKIVDSIISHGSFLNNSFIEHSVVGIRSRINSNIHLKDTVMLGADYYETDAEVAALLAEGRVPIGIGENTKIKYELQFSLS*







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