Glyma07g38820 - SoyBase

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Report for Sequence Feature Glyma07g38820

Feature Type:	gene_model
Chromosome:	Gm07
Start:	43478271
stop:	43484998
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma07g38820

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G19220	AT	Annotation by Michelle Graham. TAIR10: ADP glucose pyrophosphorylase large subunit 1 \| chr5:6463931-6466775 REVERSE LENGTH=522	SoyBase	E_val: 0	ISS
GO:0005978	GO-bp	Annotation by Michelle Graham. GO Biological Process: glycogen biosynthetic process	SoyBase	N/A	ISS
GO:0006098	GO-bp	Annotation by Michelle Graham. GO Biological Process: pentose-phosphate shunt	SoyBase	N/A	ISS
GO:0006364	GO-bp	Annotation by Michelle Graham. GO Biological Process: rRNA processing	SoyBase	N/A	ISS
GO:0009058	GO-bp	Annotation by Michelle Graham. GO Biological Process: biosynthetic process	SoyBase	N/A	ISS
GO:0009637	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to blue light	SoyBase	N/A	ISS
GO:0009902	GO-bp	Annotation by Michelle Graham. GO Biological Process: chloroplast relocation	SoyBase	N/A	ISS
GO:0010027	GO-bp	Annotation by Michelle Graham. GO Biological Process: thylakoid membrane organization	SoyBase	N/A	ISS
GO:0010114	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to red light	SoyBase	N/A	ISS
GO:0010218	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to far red light	SoyBase	N/A	ISS
GO:0015979	GO-bp	Annotation by Michelle Graham. GO Biological Process: photosynthesis	SoyBase	N/A	ISS
GO:0019684	GO-bp	Annotation by Michelle Graham. GO Biological Process: photosynthesis, light reaction	SoyBase	N/A	ISS
GO:0030244	GO-bp	Annotation by Michelle Graham. GO Biological Process: cellulose biosynthetic process	SoyBase	N/A	ISS
GO:0034660	GO-bp	Annotation by Michelle Graham. GO Biological Process: ncRNA metabolic process	SoyBase	N/A	ISS
GO:0009507	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast	SoyBase	N/A	ISS
GO:0009570	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast stroma	SoyBase	N/A	ISS
GO:0009941	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast envelope	SoyBase	N/A	ISS
GO:0008878	GO-mf	Annotation by Michelle Graham. GO Molecular Function: glucose-1-phosphate adenylyltransferase activity	SoyBase	N/A	ISS
GO:0016779	GO-mf	Annotation by Michelle Graham. GO Molecular Function: nucleotidyltransferase activity	SoyBase	N/A	ISS
KOG1322	KOG	GDP-mannose pyrophosphorylase/mannose-1-phosphate guanylyltransferase	JGI		ISS
PTHR22572	Panther	SUGAR-1-PHOSPHATE GUANYL TRANSFERASE	JGI		ISS
PTHR22572:SF10	Panther	GLUCOSE-1-PHOSPHATE ADENYLYLTRANSFERASE	JGI		ISS
PF00483	PFAM	Nucleotidyl transferase	JGI		ISS
UniRef100_C6TE56	UniRef	Annotation by Michelle Graham. Best UniRef hit: Glucose-1-phosphate adenylyltransferase n=1 Tax=Glycine max RepID=C6TE56_SOYBN	SoyBase	E_val: 0	ISS
UniRef100_C6TE56	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Glucose-1-phosphate adenylyltransferase n=1 Tax=Glycine max RepID=C6TE56_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma07g38820

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma07g38820 not represented in the dataset	Glyma07g38820 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma07g38820

Paralog	Evidence	Comments
Glyma17g01900	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma07g38820 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.07g258500	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma07g38820

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma07g38820

Limit To All Plant Sequences

>Glyma07g38820.2   sequence type=transcript   gene model=Glyma07g38820   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
GTTGAATTTGGATAACGTGGCTCACTCCTCCAAAATACCCGGATATGCATGTAAGCAAATCTGTACATAGTACATACACTACACATAGGTCGTTGCTTCTGCTTCTTGTGTAGGACATTAAAACACACACAAGTACATAAATTCCGATTTTCTCCCTGGAAAAATGGCAGCCTCTGCCGGCGGCCAGATAACTCTCTCGTCAACCGTCCAGTTACATGGAGTGACTTGTAATAGGAATTGGAAGCTTGTGAAGTTCTGTAATGGGGAAGTCATGGGACGTAAGCTTTTGTTAAAAAATGGTGGTGGCAGCACTAAGGATTTTAAGCGCCAACAACAACATATATGCATGTCTCTCACCGCTGATGTGTCCACTGAATCTAAGTTGAGAGACCTAGATATGGAAAGAAGGAACCCAAGGACAGTGTTGGCAGTTATACTAGGTGGAGGAGCTGGAACCCGTCTCTTCCCTCTTACTAAGCGACGAGCCAAACCTGCTGTTCCTATTGGAGGAGCTTACAGGCTCATTGATGTGCCAATGAGTAACTGCATCAACAGTGGTATCAACAAGGTGTATATCCTCACCCAGTTTAACTCTGCCTCACTCAACAGGCACATTGCACGCGCTTACAACTCTGGTAATGGAGTCACCTTTGGAGATGGCTATGTAGAGGTTCTTGCAGCAACCCAAACTCCAGGGGAGGCAGGTAAAAAGTGGTTTCAAGGTACTGCTGATGCTGTGAGGCAGTTCCACTGGCTCTTTGAGGATCCAAGAAGTAAGGATATTGAGGATGTCTTGATTCTTTCCGGGGATCACCTCTACCGAATGGACTATATGGACTTTGTTCAAAATCATCGGGAGAGTGGTGCAGATATCACTCTTTCTTGTCTTCCAATGGATGACAGCCGTGCCTCTGATTTTGGTCTAATGAAGATAGACAATAAAGGAAGGGTCCTTTCGTTTAGTGAAAAACCCAAAGGAGAAGAGCTGAAAGCAATGCAAGTAGATACAACCGTTTTGGGCCTTTCAAAGGACGAGGCTCAAAAGAAACCATACATTGCTTCCATGGGAGTGTACGTCTTCAAGAAGGAGATACTTCTTAATCTATTGAGATGGCGCTTTCCAACGGCTAATGACTTTGGATCAGAGGTTATTCCTGCCTCAGCCAGAGAATTTTACATGAAGGCTTATCTATTCAATGATTACTGGGAAGACATAGGTACTATCAGATCATTCTTTGAGGCAAATCTTGCCCTCACTGAGCATCCACCCAGGTTTAGCTTTTATGATGCAGCCAAACCAATGTATACATCACGGAGAAACTTACCACCATCAAAGATTGACAATAGCAAGATTGTTGATTCAATTATATCACATGGAAGCTTCTTGAATAATTCCTTCATAGAGCACAGTGTTGTTGGAATCAGATCCAGAATAAACTCAAATATTCACTTAAAGGATACAGTGATGCTTGGTGCTGATTATTATGAAACCGATGCAGAAGTGGCAGCACTCTTAGCTGAAGGAAGAGTTCCAATTGGAATAGGAGAAAATACAAAAATCAAGTATGAATTGCAATTCTCACTCTCCTAATCACTACTTTATCTCACTTTGCTCACTTCTCACATTTCTGCAGGGACTGTATTATTGACAAAAACGCTAGAATCGGAAAGAATGTTGTAATAGCAAACTCAGAGGGTATACAAGAGGCTGATAGATCTTCGGAAGGGTTTTACATCCGTTCTGGGGTTACCATTGTATTGAAAAACTCAGTAATTGAAGATGGATTCATCATATAATAAATTCACCCGTGATTTGTTTGCCCCGTTTTGCCATGAGCGGATGGGAATGTTTTGACCTTCATGAATTATGTTTTTTTTAGTAAAAAAAGGCATTAAATGTCAATGTGTTGCCGAAATGGATAGAGATAAGTTCACATATGATACATATCATATTCCAAATCAATTACATTTTTTATACAGTAAGTGTTAAAC

Coding sequences of Glyma07g38820

Limit To All Plant Sequences

>Glyma07g38820.1   sequence type=CDS   gene model=Glyma07g38820   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCAGCCTCTGCCGGCGGCCAGATAACTCTCTCGTCAACCGTCCAGTTACATGGAGTGACTTGTAATAGGAATTGGAAGCTTGTGAAGTTCTGTAATGGGGAAGTCATGGGACGTAAGCTTTTGTTAAAAAATGGTGGTGGCAGCACTAAGGATTTTAAGCGCCAACAACAACATATATGCATGTCTCTCACCGCTGATGTGTCCACTGAATCTAAGTTGAGAGACCTAGATATGGAAAGAAGGAACCCAAGGACAGTGTTGGCAGTTATACTAGGTGGAGGAGCTGGAACCCGTCTCTTCCCTCTTACTAAGCGACGAGCCAAACCTGCTGTTCCTATTGGAGGAGCTTACAGGCTCATTGATGTGCCAATGAGTAACTGCATCAACAGTGGTATCAACAAGGTGTATATCCTCACCCAGTTTAACTCTGCCTCACTCAACAGGCACATTGCACGCGCTTACAACTCTGGTAATGGAGTCACCTTTGGAGATGGCTATGTAGAGGTTCTTGCAGCAACCCAAACTCCAGGGGAGGCAGGTAAAAAGTGGTTTCAAGGTACTGCTGATGCTGTGAGGCAGTTCCACTGGCTCTTTGAGGATCCAAGAAGTAAGGATATTGAGGATGTCTTGATTCTTTCCGGGGATCACCTCTACCGAATGGACTATATGGACTTTGTTCAAAATCATCGGGAGAGTGGTGCAGATATCACTCTTTCTTGTCTTCCAATGGATGACAGCCGTGCCTCTGATTTTGGTCTAATGAAGATAGACAATAAAGGAAGGGTCCTTTCGTTTAGTGAAAAACCCAAAGGAGAAGAGCTGAAAGCAATGCAAGTAGATACAACCGTTTTGGGCCTTTCAAAGGACGAGGCTCAAAAGAAACCATACATTGCTTCCATGGGAGTGTACGTCTTCAAGAAGGAGATACTTCTTAATCTATTGAGATGGCGCTTTCCAACGGCTAATGACTTTGGATCAGAGGTTATTCCTGCCTCAGCCAGAGAATTTTACATGAAGGCTTATCTATTCAATGATTACTGGGAAGACATAGGTACTATCAGATCATTCTTTGAGGCAAATCTTGCCCTCACTGAGCATCCACCCAGGTTTAGCTTTTATGATGCAGCCAAACCAATGTATACATCACGGAGAAACTTACCACCATCAAAGATTGACAATAGCAAGATTGTTGATTCAATTATATCACATGGAAGCTTCTTGAATAATTCCTTCATAGAGCACAGTGTTGTTGGAATCAGATCCAGAATAAACTCAAATATTCACTTAAAGGATACAGTGATGCTTGGTGCTGATTATTATGAAACCGATGCAGAAGTGGCAGCACTCTTAGCTGAAGGAAGAGTTCCAATTGGAATAGGAGAAAATACAAAAATCAAGGACTGTATTATTGACAAAAACGCTAGAATCGGAAAGAATGTTGTAATAGCAAACTCAGAGGGTATACAAGAGGCTGATAGATCTTCGGAAGGGTTTTACATCCGTTCTGGGGTTACCATTGTATTGAAAAACTCAGTAATTGAAGATGGATTCATCATATAA

>Glyma07g38820.2   sequence type=CDS   gene model=Glyma07g38820   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCAGCCTCTGCCGGCGGCCAGATAACTCTCTCGTCAACCGTCCAGTTACATGGAGTGACTTGTAATAGGAATTGGAAGCTTGTGAAGTTCTGTAATGGGGAAGTCATGGGACGTAAGCTTTTGTTAAAAAATGGTGGTGGCAGCACTAAGGATTTTAAGCGCCAACAACAACATATATGCATGTCTCTCACCGCTGATGTGTCCACTGAATCTAAGTTGAGAGACCTAGATATGGAAAGAAGGAACCCAAGGACAGTGTTGGCAGTTATACTAGGTGGAGGAGCTGGAACCCGTCTCTTCCCTCTTACTAAGCGACGAGCCAAACCTGCTGTTCCTATTGGAGGAGCTTACAGGCTCATTGATGTGCCAATGAGTAACTGCATCAACAGTGGTATCAACAAGGTGTATATCCTCACCCAGTTTAACTCTGCCTCACTCAACAGGCACATTGCACGCGCTTACAACTCTGGTAATGGAGTCACCTTTGGAGATGGCTATGTAGAGGTTCTTGCAGCAACCCAAACTCCAGGGGAGGCAGGTAAAAAGTGGTTTCAAGGTACTGCTGATGCTGTGAGGCAGTTCCACTGGCTCTTTGAGGATCCAAGAAGTAAGGATATTGAGGATGTCTTGATTCTTTCCGGGGATCACCTCTACCGAATGGACTATATGGACTTTGTTCAAAATCATCGGGAGAGTGGTGCAGATATCACTCTTTCTTGTCTTCCAATGGATGACAGCCGTGCCTCTGATTTTGGTCTAATGAAGATAGACAATAAAGGAAGGGTCCTTTCGTTTAGTGAAAAACCCAAAGGAGAAGAGCTGAAAGCAATGCAAGTAGATACAACCGTTTTGGGCCTTTCAAAGGACGAGGCTCAAAAGAAACCATACATTGCTTCCATGGGAGTGTACGTCTTCAAGAAGGAGATACTTCTTAATCTATTGAGATGGCGCTTTCCAACGGCTAATGACTTTGGATCAGAGGTTATTCCTGCCTCAGCCAGAGAATTTTACATGAAGGCTTATCTATTCAATGATTACTGGGAAGACATAGGTACTATCAGATCATTCTTTGAGGCAAATCTTGCCCTCACTGAGCATCCACCCAGGTTTAGCTTTTATGATGCAGCCAAACCAATGTATACATCACGGAGAAACTTACCACCATCAAAGATTGACAATAGCAAGATTGTTGATTCAATTATATCACATGGAAGCTTCTTGAATAATTCCTTCATAGAGCACAGTGTTGTTGGAATCAGATCCAGAATAAACTCAAATATTCACTTAAAGGATACAGTGATGCTTGGTGCTGATTATTATGAAACCGATGCAGAAGTGGCAGCACTCTTAGCTGAAGGAAGAGTTCCAATTGGAATAGGAGAAAATACAAAAATCAAGTATGAATTGCAATTCTCACTCTCCTAA

Predicted protein sequences of Glyma07g38820

Limit To All Plant Sequences

>Glyma07g38820.1   sequence type=predicted peptide   gene model=Glyma07g38820   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAASAGGQITLSSTVQLHGVTCNRNWKLVKFCNGEVMGRKLLLKNGGGSTKDFKRQQQHICMSLTADVSTESKLRDLDMERRNPRTVLAVILGGGAGTRLFPLTKRRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQFNSASLNRHIARAYNSGNGVTFGDGYVEVLAATQTPGEAGKKWFQGTADAVRQFHWLFEDPRSKDIEDVLILSGDHLYRMDYMDFVQNHRESGADITLSCLPMDDSRASDFGLMKIDNKGRVLSFSEKPKGEELKAMQVDTTVLGLSKDEAQKKPYIASMGVYVFKKEILLNLLRWRFPTANDFGSEVIPASAREFYMKAYLFNDYWEDIGTIRSFFEANLALTEHPPRFSFYDAAKPMYTSRRNLPPSKIDNSKIVDSIISHGSFLNNSFIEHSVVGIRSRINSNIHLKDTVMLGADYYETDAEVAALLAEGRVPIGIGENTKIKDCIIDKNARIGKNVVIANSEGIQEADRSSEGFYIRSGVTIVLKNSVIEDGFII*

>Glyma07g38820.2   sequence type=predicted peptide   gene model=Glyma07g38820   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAASAGGQITLSSTVQLHGVTCNRNWKLVKFCNGEVMGRKLLLKNGGGSTKDFKRQQQHICMSLTADVSTESKLRDLDMERRNPRTVLAVILGGGAGTRLFPLTKRRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQFNSASLNRHIARAYNSGNGVTFGDGYVEVLAATQTPGEAGKKWFQGTADAVRQFHWLFEDPRSKDIEDVLILSGDHLYRMDYMDFVQNHRESGADITLSCLPMDDSRASDFGLMKIDNKGRVLSFSEKPKGEELKAMQVDTTVLGLSKDEAQKKPYIASMGVYVFKKEILLNLLRWRFPTANDFGSEVIPASAREFYMKAYLFNDYWEDIGTIRSFFEANLALTEHPPRFSFYDAAKPMYTSRRNLPPSKIDNSKIVDSIISHGSFLNNSFIEHSVVGIRSRINSNIHLKDTVMLGADYYETDAEVAALLAEGRVPIGIGENTKIKYELQFSLS*

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