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Report for Sequence Feature Glyma07g38820
Feature Type: gene_model
Chromosome: Gm07
Start: 43478271
stop: 43484998
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma07g38820
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT5G19220 AT
Annotation by Michelle Graham. TAIR10: ADP glucose pyrophosphorylase large subunit 1 | chr5:6463931-6466775 REVERSE LENGTH=522
SoyBase E_val: 0 ISS
GO:0005978 GO-bp
Annotation by Michelle Graham. GO Biological Process: glycogen biosynthetic process
SoyBase N/A ISS
GO:0006098 GO-bp
Annotation by Michelle Graham. GO Biological Process: pentose-phosphate shunt
SoyBase N/A ISS
GO:0006364 GO-bp
Annotation by Michelle Graham. GO Biological Process: rRNA processing
SoyBase N/A ISS
GO:0009058 GO-bp
Annotation by Michelle Graham. GO Biological Process: biosynthetic process
SoyBase N/A ISS
GO:0009637 GO-bp
Annotation by Michelle Graham. GO Biological Process: response to blue light
SoyBase N/A ISS
GO:0009902 GO-bp
Annotation by Michelle Graham. GO Biological Process: chloroplast relocation
SoyBase N/A ISS
GO:0010027 GO-bp
Annotation by Michelle Graham. GO Biological Process: thylakoid membrane organization
SoyBase N/A ISS
GO:0010114 GO-bp
Annotation by Michelle Graham. GO Biological Process: response to red light
SoyBase N/A ISS
GO:0010218 GO-bp
Annotation by Michelle Graham. GO Biological Process: response to far red light
SoyBase N/A ISS
GO:0015979 GO-bp
Annotation by Michelle Graham. GO Biological Process: photosynthesis
SoyBase N/A ISS
GO:0019684 GO-bp
Annotation by Michelle Graham. GO Biological Process: photosynthesis, light reaction
SoyBase N/A ISS
GO:0030244 GO-bp
Annotation by Michelle Graham. GO Biological Process: cellulose biosynthetic process
SoyBase N/A ISS
GO:0034660 GO-bp
Annotation by Michelle Graham. GO Biological Process: ncRNA metabolic process
SoyBase N/A ISS
GO:0009507 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: chloroplast
SoyBase N/A ISS
GO:0009570 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: chloroplast stroma
SoyBase N/A ISS
GO:0009941 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: chloroplast envelope
SoyBase N/A ISS
GO:0008878 GO-mf
Annotation by Michelle Graham. GO Molecular Function: glucose-1-phosphate adenylyltransferase activity
SoyBase N/A ISS
GO:0016779 GO-mf
Annotation by Michelle Graham. GO Molecular Function: nucleotidyltransferase activity
SoyBase N/A ISS
KOG1322
KOG
GDP-mannose pyrophosphorylase/mannose-1-phosphate guanylyltransferase
JGI ISS
PTHR22572 Panther
SUGAR-1-PHOSPHATE GUANYL TRANSFERASE
JGI ISS
PTHR22572:SF10 Panther
GLUCOSE-1-PHOSPHATE ADENYLYLTRANSFERASE
JGI ISS
PF00483 PFAM
Nucleotidyl transferase
JGI ISS
UniRef100_C6TE56 UniRef
Annotation by Michelle Graham. Best UniRef hit: Glucose-1-phosphate adenylyltransferase n=1 Tax=Glycine max RepID=C6TE56_SOYBN
SoyBase E_val: 0 ISS
UniRef100_C6TE56 UniRef
Annotation by Michelle Graham. Most informative UniRef hit: Glucose-1-phosphate adenylyltransferase n=1 Tax=Glycine max RepID=C6TE56_SOYBN
SoyBase E_val: 0 ISS
Expression Patterns of Glyma07g38820
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE
Paralogs of Glyma07g38820
Paralog Evidence Comments
Glyma17g01900 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.
Gene model name correspondences to Glyma07g38820 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
Glyma.07g258500 Wm82.a2.v1 IGC As supplied by JGI
References for Glyma07g38820
Transcripts of Glyma07g38820
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma07g38820.2 sequence type=transcript gene model=Glyma07g38820 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
GTTGAATTTGGATAACGTGGCTCACTCCTCCAAAATACCCGGATATGCATGTAAGCAAATCTGTACATAGTACATACACTACACATAGGTCGTTGCTTCTGCTTCTTGTGTAGGACATTAAAACACACACAAGTACATAAATTCCGATTTTCTCCCTGGAAAAATGGCAGCCTCTGCCGGCGGCCAGATAACTCTCTCGTCAACCGTCCAGTTACATGGAGTGACTTGTAATAGGAATTGGAAGCTTGTGAAGTTCTGTAATGGGGAAGTCATGGGACGTAAGCTTTTGTTAAAAAATGGTGGTGGCAGCACTAAGGATTTTAAGCGCCAACAACAACATATATGCATGTCTCTCACCGCTGATGTGTCCACTGAATCTAAGTTGAGAGACCTAGATATGGAAAGAAGGAACCCAAGGACAGTGTTGGCAGTTATACTAGGTGGAGGAGCTGGAACCCGTCTCTTCCCTCTTACTAAGCGACGAGCCAAACCTGCTGTTCCTATTGGAGGAGCTTACAGGCTCATTGATGTGCCAATGAGTAACTGCATCAACAGTGGTATCAACAAGGTGTATATCCTCACCCAGTTTAACTCTGCCTCACTCAACAGGCACATTGCACGCGCTTACAACTCTGGTAATGGAGTCACCTTTGGAGATGGCTATGTAGAGGTTCTTGCAGCAACCCAAACTCCAGGGGAGGCAGGTAAAAAGTGGTTTCAAGGTACTGCTGATGCTGTGAGGCAGTTCCACTGGCTCTTTGAGGATCCAAGAAGTAAGGATATTGAGGATGTCTTGATTCTTTCCGGGGATCACCTCTACCGAATGGACTATATGGACTTTGTTCAAAATCATCGGGAGAGTGGTGCAGATATCACTCTTTCTTGTCTTCCAATGGATGACAGCCGTGCCTCTGATTTTGGTCTAATGAAGATAGACAATAAAGGAAGGGTCCTTTCGTTTAGTGAAAAACCCAAAGGAGAAGAGCTGAAAGCAATGCAAGTAGATACAACCGTTTTGGGCCTTTCAAAGGACGAGGCTCAAAAGAAACCATACATTGCTTCCATGGGAGTGTACGTCTTCAAGAAGGAGATACTTCTTAATCTATTGAGATGGCGCTTTCCAACGGCTAATGACTTTGGATCAGAGGTTATTCCTGCCTCAGCCAGAGAATTTTACATGAAGGCTTATCTATTCAATGATTACTGGGAAGACATAGGTACTATCAGATCATTCTTTGAGGCAAATCTTGCCCTCACTGAGCATCCACCCAGGTTTAGCTTTTATGATGCAGCCAAACCAATGTATACATCACGGAGAAACTTACCACCATCAAAGATTGACAATAGCAAGATTGTTGATTCAATTATATCACATGGAAGCTTCTTGAATAATTCCTTCATAGAGCACAGTGTTGTTGGAATCAGATCCAGAATAAACTCAAATATTCACTTAAAGGATACAGTGATGCTTGGTGCTGATTATTATGAAACCGATGCAGAAGTGGCAGCACTCTTAGCTGAAGGAAGAGTTCCAATTGGAATAGGAGAAAATACAAAAATCAAGTATGAATTGCAATTCTCACTCTCCTAATCACTACTTTATCTCACTTTGCTCACTTCTCACATTTCTGCAGGGACTGTATTATTGACAAAAACGCTAGAATCGGAAAGAATGTTGTAATAGCAAACTCAGAGGGTATACAAGAGGCTGATAGATCTTCGGAAGGGTTTTACATCCGTTCTGGGGTTACCATTGTATTGAAAAACTCAGTAATTGAAGATGGATTCATCATATAATAAATTCACCCGTGATTTGTTTGCCCCGTTTTGCCATGAGCGGATGGGAATGTTTTGACCTTCATGAATTATGTTTTTTTTAGTAAAAAAAGGCATTAAATGTCAATGTGTTGCCGAAATGGATAGAGATAAGTTCACATATGATACATATCATATTCCAAATCAATTACATTTTTTATACAGTAAGTGTTAAAC
Coding sequences of Glyma07g38820
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma07g38820.1 sequence type=CDS gene model=Glyma07g38820 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGGCAGCCTCTGCCGGCGGCCAGATAACTCTCTCGTCAACCGTCCAGTTACATGGAGTGACTTGTAATAGGAATTGGAAGCTTGTGAAGTTCTGTAATGGGGAAGTCATGGGACGTAAGCTTTTGTTAAAAAATGGTGGTGGCAGCACTAAGGATTTTAAGCGCCAACAACAACATATATGCATGTCTCTCACCGCTGATGTGTCCACTGAATCTAAGTTGAGAGACCTAGATATGGAAAGAAGGAACCCAAGGACAGTGTTGGCAGTTATACTAGGTGGAGGAGCTGGAACCCGTCTCTTCCCTCTTACTAAGCGACGAGCCAAACCTGCTGTTCCTATTGGAGGAGCTTACAGGCTCATTGATGTGCCAATGAGTAACTGCATCAACAGTGGTATCAACAAGGTGTATATCCTCACCCAGTTTAACTCTGCCTCACTCAACAGGCACATTGCACGCGCTTACAACTCTGGTAATGGAGTCACCTTTGGAGATGGCTATGTAGAGGTTCTTGCAGCAACCCAAACTCCAGGGGAGGCAGGTAAAAAGTGGTTTCAAGGTACTGCTGATGCTGTGAGGCAGTTCCACTGGCTCTTTGAGGATCCAAGAAGTAAGGATATTGAGGATGTCTTGATTCTTTCCGGGGATCACCTCTACCGAATGGACTATATGGACTTTGTTCAAAATCATCGGGAGAGTGGTGCAGATATCACTCTTTCTTGTCTTCCAATGGATGACAGCCGTGCCTCTGATTTTGGTCTAATGAAGATAGACAATAAAGGAAGGGTCCTTTCGTTTAGTGAAAAACCCAAAGGAGAAGAGCTGAAAGCAATGCAAGTAGATACAACCGTTTTGGGCCTTTCAAAGGACGAGGCTCAAAAGAAACCATACATTGCTTCCATGGGAGTGTACGTCTTCAAGAAGGAGATACTTCTTAATCTATTGAGATGGCGCTTTCCAACGGCTAATGACTTTGGATCAGAGGTTATTCCTGCCTCAGCCAGAGAATTTTACATGAAGGCTTATCTATTCAATGATTACTGGGAAGACATAGGTACTATCAGATCATTCTTTGAGGCAAATCTTGCCCTCACTGAGCATCCACCCAGGTTTAGCTTTTATGATGCAGCCAAACCAATGTATACATCACGGAGAAACTTACCACCATCAAAGATTGACAATAGCAAGATTGTTGATTCAATTATATCACATGGAAGCTTCTTGAATAATTCCTTCATAGAGCACAGTGTTGTTGGAATCAGATCCAGAATAAACTCAAATATTCACTTAAAGGATACAGTGATGCTTGGTGCTGATTATTATGAAACCGATGCAGAAGTGGCAGCACTCTTAGCTGAAGGAAGAGTTCCAATTGGAATAGGAGAAAATACAAAAATCAAGGACTGTATTATTGACAAAAACGCTAGAATCGGAAAGAATGTTGTAATAGCAAACTCAGAGGGTATACAAGAGGCTGATAGATCTTCGGAAGGGTTTTACATCCGTTCTGGGGTTACCATTGTATTGAAAAACTCAGTAATTGAAGATGGATTCATCATATAA
>Glyma07g38820.2 sequence type=CDS gene model=Glyma07g38820 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGGCAGCCTCTGCCGGCGGCCAGATAACTCTCTCGTCAACCGTCCAGTTACATGGAGTGACTTGTAATAGGAATTGGAAGCTTGTGAAGTTCTGTAATGGGGAAGTCATGGGACGTAAGCTTTTGTTAAAAAATGGTGGTGGCAGCACTAAGGATTTTAAGCGCCAACAACAACATATATGCATGTCTCTCACCGCTGATGTGTCCACTGAATCTAAGTTGAGAGACCTAGATATGGAAAGAAGGAACCCAAGGACAGTGTTGGCAGTTATACTAGGTGGAGGAGCTGGAACCCGTCTCTTCCCTCTTACTAAGCGACGAGCCAAACCTGCTGTTCCTATTGGAGGAGCTTACAGGCTCATTGATGTGCCAATGAGTAACTGCATCAACAGTGGTATCAACAAGGTGTATATCCTCACCCAGTTTAACTCTGCCTCACTCAACAGGCACATTGCACGCGCTTACAACTCTGGTAATGGAGTCACCTTTGGAGATGGCTATGTAGAGGTTCTTGCAGCAACCCAAACTCCAGGGGAGGCAGGTAAAAAGTGGTTTCAAGGTACTGCTGATGCTGTGAGGCAGTTCCACTGGCTCTTTGAGGATCCAAGAAGTAAGGATATTGAGGATGTCTTGATTCTTTCCGGGGATCACCTCTACCGAATGGACTATATGGACTTTGTTCAAAATCATCGGGAGAGTGGTGCAGATATCACTCTTTCTTGTCTTCCAATGGATGACAGCCGTGCCTCTGATTTTGGTCTAATGAAGATAGACAATAAAGGAAGGGTCCTTTCGTTTAGTGAAAAACCCAAAGGAGAAGAGCTGAAAGCAATGCAAGTAGATACAACCGTTTTGGGCCTTTCAAAGGACGAGGCTCAAAAGAAACCATACATTGCTTCCATGGGAGTGTACGTCTTCAAGAAGGAGATACTTCTTAATCTATTGAGATGGCGCTTTCCAACGGCTAATGACTTTGGATCAGAGGTTATTCCTGCCTCAGCCAGAGAATTTTACATGAAGGCTTATCTATTCAATGATTACTGGGAAGACATAGGTACTATCAGATCATTCTTTGAGGCAAATCTTGCCCTCACTGAGCATCCACCCAGGTTTAGCTTTTATGATGCAGCCAAACCAATGTATACATCACGGAGAAACTTACCACCATCAAAGATTGACAATAGCAAGATTGTTGATTCAATTATATCACATGGAAGCTTCTTGAATAATTCCTTCATAGAGCACAGTGTTGTTGGAATCAGATCCAGAATAAACTCAAATATTCACTTAAAGGATACAGTGATGCTTGGTGCTGATTATTATGAAACCGATGCAGAAGTGGCAGCACTCTTAGCTGAAGGAAGAGTTCCAATTGGAATAGGAGAAAATACAAAAATCAAGTATGAATTGCAATTCTCACTCTCCTAA
Predicted protein sequences of Glyma07g38820
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma07g38820.1 sequence type=predicted peptide gene model=Glyma07g38820 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MAASAGGQITLSSTVQLHGVTCNRNWKLVKFCNGEVMGRKLLLKNGGGSTKDFKRQQQHICMSLTADVSTESKLRDLDMERRNPRTVLAVILGGGAGTRLFPLTKRRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQFNSASLNRHIARAYNSGNGVTFGDGYVEVLAATQTPGEAGKKWFQGTADAVRQFHWLFEDPRSKDIEDVLILSGDHLYRMDYMDFVQNHRESGADITLSCLPMDDSRASDFGLMKIDNKGRVLSFSEKPKGEELKAMQVDTTVLGLSKDEAQKKPYIASMGVYVFKKEILLNLLRWRFPTANDFGSEVIPASAREFYMKAYLFNDYWEDIGTIRSFFEANLALTEHPPRFSFYDAAKPMYTSRRNLPPSKIDNSKIVDSIISHGSFLNNSFIEHSVVGIRSRINSNIHLKDTVMLGADYYETDAEVAALLAEGRVPIGIGENTKIKDCIIDKNARIGKNVVIANSEGIQEADRSSEGFYIRSGVTIVLKNSVIEDGFII*
>Glyma07g38820.2 sequence type=predicted peptide gene model=Glyma07g38820 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MAASAGGQITLSSTVQLHGVTCNRNWKLVKFCNGEVMGRKLLLKNGGGSTKDFKRQQQHICMSLTADVSTESKLRDLDMERRNPRTVLAVILGGGAGTRLFPLTKRRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQFNSASLNRHIARAYNSGNGVTFGDGYVEVLAATQTPGEAGKKWFQGTADAVRQFHWLFEDPRSKDIEDVLILSGDHLYRMDYMDFVQNHRESGADITLSCLPMDDSRASDFGLMKIDNKGRVLSFSEKPKGEELKAMQVDTTVLGLSKDEAQKKPYIASMGVYVFKKEILLNLLRWRFPTANDFGSEVIPASAREFYMKAYLFNDYWEDIGTIRSFFEANLALTEHPPRFSFYDAAKPMYTSRRNLPPSKIDNSKIVDSIISHGSFLNNSFIEHSVVGIRSRINSNIHLKDTVMLGADYYETDAEVAALLAEGRVPIGIGENTKIKYELQFSLS*