Glyma07g38620 - SoyBase

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Report for Sequence Feature Glyma07g38620

Feature Type:	gene_model
Chromosome:	Gm07
Start:	43327783
stop:	43329889
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma07g38620

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G19040	AT	Annotation by Michelle Graham. TAIR10: isopentenyltransferase 5 \| chr5:6362389-6363381 REVERSE LENGTH=330	SoyBase	E_val: 2.00E-114	ISS
GO:0007131	GO-bp	Annotation by Michelle Graham. GO Biological Process: reciprocal meiotic recombination	SoyBase	N/A	ISS
GO:0008033	GO-bp	Annotation by Michelle Graham. GO Biological Process: tRNA processing	SoyBase	N/A	ISS
GO:0009691	GO-bp	Annotation by Michelle Graham. GO Biological Process: cytokinin biosynthetic process	SoyBase	N/A	ISS
GO:0005739	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion	SoyBase	N/A	ISS
GO:0009536	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plastid	SoyBase	N/A	ISS
GO:0005524	GO-mf	Annotation by Michelle Graham. GO Molecular Function: ATP binding	SoyBase	N/A	ISS
GO:0009824	GO-mf	Annotation by Michelle Graham. GO Molecular Function: AMP dimethylallyltransferase activity	SoyBase	N/A	ISS
GO:0016765	GO-mf	Annotation by Michelle Graham. GO Molecular Function: transferase activity, transferring alkyl or aryl (other than methyl) groups	SoyBase	N/A	ISS
GO:0052622	GO-mf	Annotation by Michelle Graham. GO Molecular Function: ATP dimethylallyltransferase activity	SoyBase	N/A	ISS
GO:0052623	GO-mf	Annotation by Michelle Graham. GO Molecular Function: ADP dimethylallyltransferase activity	SoyBase	N/A	ISS
KOG1384	KOG	tRNA delta(2)-isopentenylpyrophosphate transferase	JGI		ISS
PTHR11088	Panther	TRNA DELTA(2)-ISOPENTENYLPYROPHOSPHATE TRANSFERASE-RELATED	JGI		ISS
PTHR11088:SF20	Panther	CYTOKININ SYNTHASE	JGI		ISS
PF01715	PFAM	IPP transferase	JGI		ISS
UniRef100_I1KN84	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Glycine max RepID=I1KN84_SOYBN	SoyBase	E_val: 0	ISS
UniRef100_Q2MHM8	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Adenylate isopentenyltransferase n=1 Tax=Pisum sativum RepID=Q2MHM8_PEA	SoyBase	E_val: 2.00E-152	ISS

Expression Patterns of Glyma07g38620

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma07g38620

Paralog	Evidence	Comments
Glyma17g02080	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma07g38620 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.07g256700	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma07g38620

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma07g38620

Limit To All Plant Sequences

>Glyma07g38620.2   sequence type=CDS   gene model=Glyma07g38620   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGATGAACATGCTTTCGGTGTCAGCAGCGCTGTGCAAGCCCGTAGCGAGTTTCAACCCGGCATCACATTCACTGAGGAATATGAACTCGCTGTCCCTCTTCATGAACAAGAAGGAAAAAGTAGTGGTAATCATGGGCGCAACGGGGACAGGAAAGTCAAAACTGGCCATAGAGTTGGCCACGCAATTCCCACCAGCGGAGATAGTCAACTCCGACAAAATGCAAGTGTACGAAGGCCTAAACATCACCACAAACAAAGTCACCGAAGAAGAGCGTCGCGGGGTCCCACACCATCTCCTAGGCACGGTGAATCCCAACACCAGTTTCACTGCACAAGACTTTTGCGACCAGGCCACTCTCGCCGTTGGGTCCATATTGGGCCGTGACGGTTTACCCATCATTGCGGGTGGGTCCAACTCCTTCCTCGACGCGTTGGTCAACCATCACACCGAGTTTCGGTTACGCTACGACTGCTGCTTCCTCTGGGTCGATGTCTCACTCCCCGTCCTCCATTCCTCTCTCTCCGCACGTGTGGATCGCATGATCCACTCTGGCCAGCTCCACGAGGTTCGACAGAGTTTTCAATACCACAACCAGGATTATACCTTAGGGATACGAAAGGCCATTGGCGTACCCGAGTTTCATGATTTTTTCAGAGCCGAAGCCGACGGAGCCGATCAGAGGACCAAACAGCGCCTCCTCCAGGCTGCCATTGCTTCCCTCAAAACCAACAACTGCACCCTCGCCAAGCGGCAGCTCCAGAAGATTCACCGCCTTTATAGCATGTGGAAACGGAACATGCACCGCCTCGACGCCACCGAGGTTTTCCTCAAGACCACTCGCCAGGAGGCAGAGGAGGCCTGGGAGGATCACGTCTTGTCCAAGACCAGAAGGATTCTCCATAAGTTCCTGTATGAGGACACGCATGTTGTTCCCGCAGGTATTGCGTCTGTTGTTATTGCTTCTTCGCCGCCGCCCATGCCTGCCACCGCCGCCGCCGCAACTCACTAG

Predicted protein sequences of Glyma07g38620

Limit To All Plant Sequences

>Glyma07g38620.2   sequence type=predicted peptide   gene model=Glyma07g38620   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MMNMLSVSAALCKPVASFNPASHSLRNMNSLSLFMNKKEKVVVIMGATGTGKSKLAIELATQFPPAEIVNSDKMQVYEGLNITTNKVTEEERRGVPHHLLGTVNPNTSFTAQDFCDQATLAVGSILGRDGLPIIAGGSNSFLDALVNHHTEFRLRYDCCFLWVDVSLPVLHSSLSARVDRMIHSGQLHEVRQSFQYHNQDYTLGIRKAIGVPEFHDFFRAEADGADQRTKQRLLQAAIASLKTNNCTLAKRQLQKIHRLYSMWKRNMHRLDATEVFLKTTRQEAEEAWEDHVLSKTRRILHKFLYEDTHVVPAGIASVVIASSPPPMPATAAAATH*

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