Glyma07g38611 - SoyBase

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Report for Sequence Feature Glyma07g38611

Feature Type:	gene_model
Chromosome:	Gm07
Start:	43310933
stop:	43314830
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma07g38611

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G19030	AT	Annotation by Michelle Graham. TAIR10: RNA-binding (RRM/RBD/RNP motifs) family protein \| chr5:6357570-6359024 REVERSE LENGTH=126	SoyBase	E_val: 3.00E-18	ISS
GO:0000398	GO-bp	Annotation by Michelle Graham. GO Biological Process: mRNA splicing, via spliceosome	SoyBase	N/A	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0005739	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion	SoyBase	N/A	ISS
GO:0009507	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast	SoyBase	N/A	ISS
GO:0000166	GO-mf	Annotation by Michelle Graham. GO Molecular Function: nucleotide binding	SoyBase	N/A	ISS
GO:0003676	GO-mf	Annotation by Michelle Graham. GO Molecular Function: nucleic acid binding	SoyBase	N/A	ISS
GO:0003723	GO-mf	Annotation by Michelle Graham. GO Molecular Function: RNA binding	SoyBase	N/A	ISS
PTHR24011	Panther	FAMILY NOT NAMED	JGI		ISS
PF00076	PFAM	RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)	JGI		ISS
UniRef100_F4JZK9	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: RNA recognition motif-containing protein n=1 Tax=Arabidopsis thaliana RepID=F4JZK9_ARATH	SoyBase	E_val: 3.00E-15	ISS
UniRef100_UPI000233EF39	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI000233EF39 related cluster n=1 Tax=unknown RepID=UPI000233EF39	SoyBase	E_val: 1.00E-67	ISS

Expression Patterns of Glyma07g38611

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma07g38611 not represented in the dataset	Glyma07g38611 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma07g38611

Paralog	Evidence	Comments
Glyma17g02091	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma07g38611 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.07g256600	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma07g38611

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma07g38611

Limit To All Plant Sequences

>Glyma07g38611.2   sequence type=transcript   gene model=Glyma07g38611   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
TTTTGGCAGCAGAAGTTGCTAGTTATCTTTTCTGTCATCACCTTCACAACAAACAAGAAGCGAAGTTGTGAGTTTCCGATGGCACAACAAGTTCAAGTATTCACTACATGTTATTGTCCACCACCTCAATACGAATACCTTCGCCGAATCGGAATTTCGAAGCAATTAAAGTGTGCTACTATTCCTTCACTATCAGTTTCCGCCTCTTCTGTTCTTCGTAACGCGTCGTTTTGCTGCACCTCTTCTGTCCACTGCAATTTACCTTCTTCACCCAAAATCTTCGTCAAAGGGCTTCCTCTCTCAACCTCTGAAGGACGTCTGATGAAGGTGTTTTCAGAGTTTGGTGACGTTACTCTAGTCCAGCTTCCAATAGATAGAGAGTCTGGGCAGTCTTTAGGATTTGCATATATTTGGTTTGTCAAGGAAGAGTCTGCCCAATTGGCTGTGCAAGAGATGAATGGAAAGTTTTTTGATGGCAGGTTTATTTATGTTACAATTGCAAAGCCTGGATCATCAAAAAGTTCCAAGAGGACAACAGCCTACAAATTTTAATCATATGAACAGTTTCCAATTGCATCTTTTTCGTCCCCCCACCACCAAAAAAAAAGAAAAGGAAAAGCTATTCTAGCAACTTTTTTTAATTGTTAGTGTCCACAAACTTTTCCACTGTCTTGTTGAATCTTGGTTGGCATTAAAGGACCCTATCAATTCCTTGATGGAATGCTACACATTCTATTCCCTAGCCTCAGAATCAAGAGACCCCTTGATTTGCAAAGTAACTAAACTTATCACAAATAGTATTATGTGTGGGTTATATACATAGTGAAGTTCCCATAACAAAAACATATATTGCTTTGAAGTTGGTGATCAAGAACAAGCAGCAGTTCTAGTCCCTCCTGGGGGGTGGGGGGAAGTGCAAGGTTTTAGCCTTCTATCTTTCGGTGGCTGCTTTGATAGCTGTCGCGACCTCCCTCAAGGCACCGGATATGGGACAAGGATATGGTACCTCAGTGATCGACCTGTGGAGCTACAAGTAAGGTTGGGATCATCACTGAAGAAGTTTCACACGTTGAAGCAAGGGTCTTCTCAAAGACTGAAACGGAAAAGCATATATATATAAGGCATATATGCCTGGAAGGAGTGACAGTGTTGGTTGGAGCTTGAAGAGCTTATTGTATTGCTATGATGAAACTTGTCACCCTTATATTTTGGATTCATGACACAGGGTGTCATTCCTTAAGGATGGTTAAGCAGCAGTATATTAGCCTCAAGGATCCGAGGGATTCTTCTGAGATGAAAATCTGCTGGGATCATGAGAGGTTCTATCTCAGTTCGTAAGAGAACGAGACCAGATTCTGCTGAATTTGTTGAATTTGGCTCTTAAGTCTAAACTTATTTCTCAAGTTTGTTTGTCATGAGTTAAATAGTTACACTATTTTTGCCTTCTTTTTTTTTTTAAAAAAAAAAAAAATTCATTCGTAAGAGAGCGAGCTCCATTTCTATAGTCTCCGTCTAGAAAATCAATTCAACAGTACTTTGGCTGTGCTGGTCGTGGGAATTTTTGGGTAAACAATAATAGTTTTTGTATTTCACTAGTGGGTACATTATAACATGTTACCTTGATCTGAAGTTCCCGCAAACATTGACAAGTGATATTCTATTGTGATTTTTTTGTTCTTTTGCGAATCTCTTATTTTCTGTACACTGTGAATCAATTAAATTCATAAAAAAAAT

Coding sequences of Glyma07g38611

Limit To All Plant Sequences

>Glyma07g38611.1   sequence type=CDS   gene model=Glyma07g38611   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
TTTTGGCAGCAGAAGTTGCTAGTTATCTTTTCTGTCATCACCTTCACAACAAACAAGAAGCGAAGTTGTGAGTTTCCGATGGCACAACAAGTTCAAGTATTCACTACATGTTATTGTCCACCACCTCAATACGAATACCTTCGCCGAATCGGAATTTCGAAGCAATTAAAGTGTGCTACTATTCCTTCACTATCAGTTTCCGCCTCTTCTGTTCTTCGTAACGCGTCGTTTTGCTGCACCTCTTCTGTCCACTGCAATTTACCTTCTTCACCCAAAATCTTCGTCAAAGGGCTTCCTCTCTCAACCTCTGAAGGACGTCTGATGAAGGTGTTTTCAGAGTTTGGTGACGTTACTCTAGTCCAGCTTCCAATAGATAGAGAGTCTGGGCAGTCTTTAGGATTTGCATATATTTGGTTTGTCAAGGAAGAGTCTGCCCAATTGGCTGTGCAAGAGATGAATGGAAAGGTTTTTTTGATGGCAGGTTTATTTATGTTACAATTGCAAAGCCTGGATCATCAAAAAGTTCCAAGAGGACAACAGCCTACAAATTTTAATCATATGAACAGTTTCCAATTGCATCTTTTTCGTCCCCCCACCACCAAAAAAAAAGAAAAGGAAAAGCTATTCTAG

>Glyma07g38611.2   sequence type=CDS   gene model=Glyma07g38611   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
TTTTGGCAGCAGAAGTTGCTAGTTATCTTTTCTGTCATCACCTTCACAACAAACAAGAAGCGAAGTTGTGAGTTTCCGATGGCACAACAAGTTCAAGTATTCACTACATGTTATTGTCCACCACCTCAATACGAATACCTTCGCCGAATCGGAATTTCGAAGCAATTAAAGTGTGCTACTATTCCTTCACTATCAGTTTCCGCCTCTTCTGTTCTTCGTAACGCGTCGTTTTGCTGCACCTCTTCTGTCCACTGCAATTTACCTTCTTCACCCAAAATCTTCGTCAAAGGGCTTCCTCTCTCAACCTCTGAAGGACGTCTGATGAAGGTGTTTTCAGAGTTTGGTGACGTTACTCTAGTCCAGCTTCCAATAGATAGAGAGTCTGGGCAGTCTTTAGGATTTGCATATATTTGGTTTGTCAAGGAAGAGTCTGCCCAATTGGCTGTGCAAGAGATGAATGGAAAGTTTTTTGATGGCAGGTTTATTTATGTTACAATTGCAAAGCCTGGATCATCAAAAAGTTCCAAGAGGACAACAGCCTACAAATTTTAA

Predicted protein sequences of Glyma07g38611

Limit To All Plant Sequences

>Glyma07g38611.1   sequence type=predicted peptide   gene model=Glyma07g38611   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
FWQQKLLVIFSVITFTTNKKRSCEFPMAQQVQVFTTCYCPPPQYEYLRRIGISKQLKCATIPSLSVSASSVLRNASFCCTSSVHCNLPSSPKIFVKGLPLSTSEGRLMKVFSEFGDVTLVQLPIDRESGQSLGFAYIWFVKEESAQLAVQEMNGKVFLMAGLFMLQLQSLDHQKVPRGQQPTNFNHMNSFQLHLFRPPTTKKKEKEKLF*

>Glyma07g38611.2   sequence type=predicted peptide   gene model=Glyma07g38611   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
FWQQKLLVIFSVITFTTNKKRSCEFPMAQQVQVFTTCYCPPPQYEYLRRIGISKQLKCATIPSLSVSASSVLRNASFCCTSSVHCNLPSSPKIFVKGLPLSTSEGRLMKVFSEFGDVTLVQLPIDRESGQSLGFAYIWFVKEESAQLAVQEMNGKFFDGRFIYVTIAKPGSSKSSKRTTAYKF*

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