Glyma07g38600 - SoyBase

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Report for Sequence Feature Glyma07g38600

Feature Type:	gene_model
Chromosome:	Gm07
Start:	43303096
stop:	43309272
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma07g38600

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT4G14240	AT	Annotation by Michelle Graham. TAIR10: CBS domain-containing protein with a domain of unknown function (DUF21) \| chr4:8204712-8207273 REVERSE LENGTH=494	SoyBase	E_val: 0	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0005886	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane	SoyBase	N/A	ISS
GO:0003674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: molecular function	SoyBase	N/A	ISS
KOG2118	KOG	Predicted membrane protein, contains two CBS domains	JGI		ISS
PTHR12064	Panther	ANCIENT CONSERVED DOMAIN PROTEIN-RELATED	JGI		ISS
PTHR12064:SF2	Panther	CYCLIN-RELATED	JGI		ISS
PF01595	PFAM	Domain of unknown function DUF21	JGI		ISS
UniRef100_G7JTY3	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Metal transporter CNNM4 n=1 Tax=Medicago truncatula RepID=G7JTY3_MEDTR	SoyBase	E_val: 7.00E-152	ISS
UniRef100_I1KN82	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1KN82_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma07g38600

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma07g38600

Paralog	Evidence	Comments
Glyma17g02110	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma07g38600 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.07g256500	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma07g38600

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma07g38600

Limit To All Plant Sequences

>Glyma07g38600.1   sequence type=CDS   gene model=Glyma07g38600   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAGGGCAGTAAGTGCGTTAATGGTGGCTCGGATGTTGACGCGGGACCACTCGCTCCCTGTCCTTGGCAACGAAAGCATACCCTTCGGATCGGTGTGGTGGTTCGCCTATGCCGGCGTCTCCTGTTTCCTCGTCCTCTTCGCTGGCATCATGTCCGGTCTCACCCTCGGACTCATGTCTCTGGGCCTCGTGGACCTCGAGATCCTCGAACGCAGTGGTTCTCCTGCCGAGAAAATGCAAGCTGCGATTATACTTCCTGTGGTTAAAAAACAACACCAGCTTCTTGTCACCCTACTTCTCTGTAATGCTGTTGCCATGGAGGCTCTGCCGTTATACCTAGATAAACTATTCAATCAGTTTGTTGCTATCATTCTCTCTGTAACTTTCGTTCTGTTTTTCGGGGAGGTTATTCCACAAGCAATTTGTAGTAGATATGGTCTTGCTGTAGGTGCCAACTTTGCATGGCTAGTGCGGATTTTAATGATTATCTGTTACCCAGTTTCTTATCCAGTTGGAAAGGTTCTGGATCACCTATTGGGGCATAATGAGGCTTTATTTAGGCGAGCTCAGTTAAAAGCCCTTGTCTCCATTCACGGCCAGGAGGCCGGGAAAGGTGGTGAGCTTACACATGATGAAACAACAATTATCAGTGGAGCACTCGATTTGACTGAAAAGACTGCTGAGGAGGCTATGACTCCTATTGAATCGACATTTTCTTTGGATGTTAATTCAAAGTTGGATTGGGAAGCAATGGGAAAAGTTCTTGCTCGCGGGCACAGCCGAGTTCCTGTCTATTCTGGAAATCCAAGGAATATTATTGGGCTTCTACTGGTCAAAAGTCTTCTTACTGTACGACCAGAAACAGAGACACCTGTCAGTGCTGTATCCATCCGGAGAATTCCACGGGTTCCATCAGATATGCCTCTCTATGATATACTAAATGAGTTCCAAAAGGGAAGTAGTCATATGGCTGCTGTTGTTAAGGCTAGGGGAAAAGGCAAAGAAACTCCACAAATCATTGATGAAGAGAAAAATGAAGAAAACAAAAGCATTGGTGGGGATTCACAGTTGACCACTCCGTTGCTACAGAAGCAGGATGCAAAATCAGGAAGTGTTGTTGTTGACATAGTCAAGCCTTCAAAGCCTTCCAGCATTAATAAGCTGTCTGTTTTGCAACGTAGTGATAGCACAACAAATGGTCCCTCTTCAGAAAATATTGAAGATGGTGAAGTGATTGGTATTATCACTTTAGAAGATGTATTTGAAGAACTTCTGCAAGAAGAAATTGTTGATGAGACAGATGAATATGTGGATGTTCATAAGAGAATACGTGTTGCTGCAGCTGCAGCTGCTTCCTCAGTGGCCCGAGCTCCATCATCGCGAAGGTTGACTAGCCAGAAGGGAGCAGGAATCCAAAGTAAGCCAGGGCAAGCTCCAAAGAAATCTGCAGAGGAAAATGGATTGAACTCTACAAAGCAATAA

Predicted protein sequences of Glyma07g38600

Limit To All Plant Sequences

>Glyma07g38600.1   sequence type=predicted peptide   gene model=Glyma07g38600   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MRAVSALMVARMLTRDHSLPVLGNESIPFGSVWWFAYAGVSCFLVLFAGIMSGLTLGLMSLGLVDLEILERSGSPAEKMQAAIILPVVKKQHQLLVTLLLCNAVAMEALPLYLDKLFNQFVAIILSVTFVLFFGEVIPQAICSRYGLAVGANFAWLVRILMIICYPVSYPVGKVLDHLLGHNEALFRRAQLKALVSIHGQEAGKGGELTHDETTIISGALDLTEKTAEEAMTPIESTFSLDVNSKLDWEAMGKVLARGHSRVPVYSGNPRNIIGLLLVKSLLTVRPETETPVSAVSIRRIPRVPSDMPLYDILNEFQKGSSHMAAVVKARGKGKETPQIIDEEKNEENKSIGGDSQLTTPLLQKQDAKSGSVVVDIVKPSKPSSINKLSVLQRSDSTTNGPSSENIEDGEVIGIITLEDVFEELLQEEIVDETDEYVDVHKRIRVAAAAAASSVARAPSSRRLTSQKGAGIQSKPGQAPKKSAEENGLNSTKQ*

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