SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT3G23580 | AT | Annotation by Michelle Graham. TAIR10: ribonucleotide reductase 2A | chr3:8460261-8462574 FORWARD LENGTH=341 | SoyBase | E_val: 0 | ISS |
| GO:0006281 | GO-bp | Annotation by Michelle Graham. GO Biological Process: DNA repair | SoyBase | N/A | ISS |
| GO:0007275 | GO-bp | Annotation by Michelle Graham. GO Biological Process: multicellular organismal development | SoyBase | N/A | ISS |
| GO:0009186 | GO-bp | Annotation by Michelle Graham. GO Biological Process: deoxyribonucleoside diphosphate metabolic process | SoyBase | N/A | ISS |
| GO:0009220 | GO-bp | Annotation by Michelle Graham. GO Biological Process: pyrimidine ribonucleotide biosynthetic process | SoyBase | N/A | ISS |
| GO:0009259 | GO-bp | Annotation by Michelle Graham. GO Biological Process: ribonucleotide metabolic process | SoyBase | N/A | ISS |
| GO:0051726 | GO-bp | Annotation by Michelle Graham. GO Biological Process: regulation of cell cycle | SoyBase | N/A | ISS |
| GO:0055114 | GO-bp | Annotation by Michelle Graham. GO Biological Process: oxidation-reduction process | SoyBase | N/A | ISS |
| GO:0005737 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm | SoyBase | N/A | ISS |
| GO:0005829 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: cytosol | SoyBase | N/A | ISS |
| GO:0005971 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: ribonucleoside-diphosphate reductase complex | SoyBase | N/A | ISS |
| GO:0004748 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: ribonucleoside-diphosphate reductase activity, thioredoxin disulfide as acceptor | SoyBase | N/A | ISS |
| GO:0016491 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: oxidoreductase activity | SoyBase | N/A | ISS |
| GO:0046914 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: transition metal ion binding | SoyBase | N/A | ISS |
| KOG1567 | KOG | Ribonucleotide reductase, beta subunit | JGI | ISS | |
| PTHR23409 | Panther | RIBONUCLEOSIDE-DIPHOSPHATE REDUCTASE SMALL CHAIN | JGI | ISS | |
| PTHR23409:SF6 | Panther | SUBFAMILY NOT NAMED | JGI | ISS | |
| PF00268 | PFAM | Ribonucleotide reductase, small chain | JGI | ISS | |
| UniRef100_Q9XE60 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Ribonucleotide reductase small subunit n=1 Tax=Glycine max RepID=Q9XE60_SOYBN | SoyBase | E_val: 0 | ISS |
| UniRef100_Q9XE60 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Ribonucleotide reductase small subunit n=1 Tax=Glycine max RepID=Q9XE60_SOYBN | SoyBase | E_val: 0 | ISS |
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Glyma07g38570 not represented in the dataset |
Glyma07g38570 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.07g256200 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma07g38570.1 sequence type=CDS gene model=Glyma07g38570 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGGGTCTTTGGAAAATAATGGAGTAGACAAAGCAAGGGATGAACAAGAACCAATTCTAATGGAGCAAAGCCAGAGGTTTTGCATGTTCCCCATTCGCTACAAGCAAATTTGGGAGATGTACAAGAAGGCTGAAGCCAGTTTCTGGACTGCTGAAGAGGTTGATCTCTCTTATGATGTACAACATTGGGAGACCTTGTCTGTCTCTGAGAAGCACTTCATAACACATGTCCTAGCTTTTTTTGCTGCTTCTGATGGAATTGTCTTGGAGAATTTGGCTGCAAGGTTTCTGAGTGATGTTCAAATTCCCGAGGCTCGGGCATTTTATGGGTTTCAGATAGCAATGGAGAATATTCATTCAGAGATGTACAGCTTGCTGCTGGAGACGTATATTAAAGATTCAAGAGAAAAACATAAATTATTCAATGCAATCGAAAATTTGCCTTGTGTTGCAAGGAAGGCAGAATGGGCATTGAGTTGGATTCATAGTTCCACTTCATTTGCAGAGAGACTTGTTGCTTTTGCATGCGTTGAAGGGATATTTTTCTCAGGAAGCTTCTGTGCCATATTCTGGCTTAAAAAGAGAGGATTGATGCCAGGTTTGACATTCTCAAATGAGCTAATCTCTAGAGATGAGGGCCTTCATTGTGATTTTGCTTGTCTTCTGTACAGTTTGTTACGGAAGCCGCTAATTTCTGATCAGGTTCATAAGCTTGTACACGAAGCTGTTGAAATTGAAACTGAGTTTGTGTGTGACGCCCTCCCCTGTGCATTGATTGGCATGAACTCAGTGCTCATGAGCCAGTACATAAAATTTGTTGCTGACAGGCTGTTGGTTGCCTTGGGGTACCAAAGAAAGTACAATGTGGAAAATCCCTTTGATTGGATGGAGTTTATTTCTTTGCAAGGAAAGGCCAACTTTTTCGAGAGAAGGGTGGGTGATTATCAAAAAGCGTCTGTGATGTCAAGCCTCCAAGATGCCGGGAAAAACTTTGTTTTCAAGCTTGATGAGGACTTCTAA
>Glyma07g38570.1 sequence type=predicted peptide gene model=Glyma07g38570 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MGSLENNGVDKARDEQEPILMEQSQRFCMFPIRYKQIWEMYKKAEASFWTAEEVDLSYDVQHWETLSVSEKHFITHVLAFFAASDGIVLENLAARFLSDVQIPEARAFYGFQIAMENIHSEMYSLLLETYIKDSREKHKLFNAIENLPCVARKAEWALSWIHSSTSFAERLVAFACVEGIFFSGSFCAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLLYSLLRKPLISDQVHKLVHEAVEIETEFVCDALPCALIGMNSVLMSQYIKFVADRLLVALGYQRKYNVENPFDWMEFISLQGKANFFERRVGDYQKASVMSSLQDAGKNFVFKLDEDF*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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