Glyma07g38510 - SoyBase

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Integrating Genetics and Genomics to Advance Soybean Research

Report for Sequence Feature Glyma07g38510

Feature Type:	gene_model
Chromosome:	Gm07
Start:	43226635
stop:	43233554
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma07g38510

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G19010	AT	Annotation by Michelle Graham. TAIR10: mitogen-activated protein kinase 16 \| chr5:6345096-6347676 REVERSE LENGTH=567	SoyBase	E_val: 0	ISS
GO:0006468	GO-bp	Annotation by Michelle Graham. GO Biological Process: protein phosphorylation	SoyBase	N/A	ISS
GO:0007165	GO-bp	Annotation by Michelle Graham. GO Biological Process: signal transduction	SoyBase	N/A	ISS
GO:0010075	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of meristem growth	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0005773	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: vacuole	SoyBase	N/A	ISS
GO:0005886	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane	SoyBase	N/A	ISS
GO:0004672	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein kinase activity	SoyBase	N/A	ISS
GO:0004707	GO-mf	Annotation by Michelle Graham. GO Molecular Function: MAP kinase activity	SoyBase	N/A	ISS
GO:0005524	GO-mf	Annotation by Michelle Graham. GO Molecular Function: ATP binding	SoyBase	N/A	ISS
GO:0016772	GO-mf	Annotation by Michelle Graham. GO Molecular Function: transferase activity, transferring phosphorus-containing groups	SoyBase	N/A	ISS
KOG0660	KOG	Mitogen-activated protein kinase	JGI		ISS
PTHR24055	Panther	MITOGEN-ACTIVATED PROTEIN KINASE	JGI		ISS
PTHR24055:SF69	Panther		JGI		ISS
PF00069	PFAM	Protein kinase domain	JGI		ISS
UniRef100_B9RSS7	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Big map kinase/bmk, putative n=1 Tax=Ricinus communis RepID=B9RSS7_RICCO	SoyBase	E_val: 0	ISS
UniRef100_UPI0002338DA1	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI0002338DA1 related cluster n=1 Tax=unknown RepID=UPI0002338DA1	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma07g38510

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma07g38510

Paralog	Evidence	Comments
Glyma17g02220	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma07g38510 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.07g255400	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma07g38510

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma07g38510

Limit To All Plant Sequences

>Glyma07g38510.3   sequence type=transcript   gene model=Glyma07g38510   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATTTTCCAGTCTTGTTCCCTTTATTATGCGCGTCTCTGTTTCTGAGCTTAATACACCACACCACACCATTCTTCAACTTCAACTACATTACATGTTCTCTCTGTCTTTCCGATTCTCTTTCTGAGATCCAAAAGCCTTACTTTTTCTCCCTCTCAATTCTCCTTCTAATCTCTAGAATCCGCTTCTTCAATTCCCAGTTTTCTCCACACCAAAAAACGAATCTTATTCGGCTCTAAAATCCTCACCATCTCATTTTTTTTTCTCTGTCTCTGTTTTTTATTTTTTATTCGTTCCCTTTAGCCCTGTTAGTGATCATCGCCACAAGATTAGTTTTTCCGCTGATTCTCAGCTTAATTGATTAGAATAACTCGTTTTCCAGCGTGATCTGTAACTGGGGCATTTACAGCTACATTTTTGGTACTTCCGCCAAATTGTCTATGTTGTTCTTGTTTCCTCTTCCGAATTCTCCGTCTCTTATACAATACAGTGCTATGTAGTGTAGTTTACGTTCCTTTGTTACAATCGCGGGTGTTATTTTAGCCGCCAAAATTTACTGGGTCTGTCTTCTTATTGTTGAGCTCTGAAGGTCTTTATTTTCTTTTTTTACTCCTTAATTTATCCATTTTTCTTTTTTGCACTTCTTTTATTATTGCGGTTGAGGGGGTTGTTGGATCATTGACGAGTTTTATGCTTAAATTTCAAGATGCCGCATGATCAGAGAAAAAAGTCGTCTGTAGATATAGACTTCTTTACAGAATACGGCGAAGGGAGTAGATACAAAATAGAGGAAGTAATAGGTAAAGGAAGCTATGGTGTTGTTTGCTCTGCATATGATACACACACTGGAGAAAAGGTTGCAATAAAGAAAATCAATGACATATTTGAACATGTTTCTGATGCCACTCGCATTCTTCGTGAGATCAAGCTTCTTAGACTCTTACACCATCCTGATATTGTGGAGATCAAGCATATTTTGTTACCTCCTTCTAGAAGGGAATTCAAAGATATATATGTTGTTTTTGAGCTTATGGAATCTGATTTACATCAGGTCATCAAAGCAAATGATGATTTGACTCCAGAGCATTATCAGTTTTTTCTCTATCAGCTTCTTCGAGGCTTGAAGTATATACACACAGCAAATGTATTTCACCGAGATCTAAAGCCAAAAAATATTTTAGCAAATGCTGACTGCAAACTGAAGATTTGTGACTTCGGTCTTGCCAGAGTGGCTTTCAATGATACGCCAACTGCTATATTTTGGACAGATTACGTTGCAACAAGGTGGTATAGAGCTCCTGAATTGTGTGGATCCTTTTTCTCCAAGTATACCCCAGCTATAGACATATGGAGCATTGGCTGCATTTTCGCAGAACTTTTAACTGGAAAACCTCTTTTCCCAGGGAAGAATGTTGTCCATCAATTGGACCTCATGACTGATTTTCTTGGAACACCATCTCCTGAAGCCATTGCTAGGGTACGGAATGAGAAAGCTCGGAGATACTTGTGTTGCATGCGTAAGAAGAAGCCAGTTCCTTTCTCCCAAAAGTTTCCTAATGTAGACCCCCTTGCTCTTCGTGTGTTAGAAAGAATGCTGGCATTTGAACCTAAGGATCGACCTACTGCTGAAGAGGCTCTAGCATATCCATATTTTAAAGGCTTGGCCAAGGTTGAGAGAGAACCTTCTGCTCAGCCAGTTACCAAGATGGAATTTGAATTCGAGAGACGTAGGATAACAAAGGAAGATGTGCGAGAGCTTATATACCGAGAGATTCTGGAGTACCATCCAAAGATGTTAAAAGAACATCTAGAGGGAGAAGAGCCAACAGGATTCATGTATCCAAGTGCTGTGGACCACTTCAAGAAACAATTTGCATATCTTGAGGAGCATTATGGAAAAGCTGGAACTGTTACTCCACCCGAGAGGCAACACGCATCATTACCTAGGCCATGTGTGTTGTATTCTGATAACTCAAGACAAAATATGGCTGAGGTTGCAGATGATATCTCCAAGTGTATCATCAAAGAAGTTGAGAAGCCAGCCATGGACAGGACTGGTGGTATCCCAATGACCAGGCTTCCTTTACAAGCTCCTCAAAATATTCAAGTTGCTTCAGGTGTTGCTGCGCGGCCCGGAAAAGTTGTAGGTTCAATATTGCATTACAACAACTGTGGGGCAGCAGTTACAGCTGATGCTGAGCAGCGGAGGATGGGTAGAAATCCATCTGTTTCAGCCCAGTATGCTGCTCCAAGCAGTTCATATCCAAGACGAAACCCAAGCTGTAAAAGTGAGAGGGCAGAAGAAGTGATCGAAGGTGCTAATGGACTTCAGACTAAGCCTCAACACATAACACAAAAAGTTGCTGCTGCTGCTCTAGGGGGACCTGGTGGTAATTGGTATTGATTTTGGAAATGTTGAATTTGTGTCCTGCAACTGCTTTGTGTCAGCATATCAGGTTTCTTGGCCTACACGGAACGCAGATCAATCATCTGAATTGAATAAAGATATGAGAGGCCATAGCATCGACAATATCGAAGGATGAGAGAGCTAAAGGGATTAGAATACAAGGAAGTCTCTAGCTGATTTTTTATTAGATCTTGCAATTCGGTCCACCAATTTGAAGTTTGGAAGGTTCGACATGGTGCAATTATGATTTTCTTGCTGTCTAGTTCGTTAAAAACAGAGAATGAAAGATCTGAAAAGCATGAAATGAAGATGGCAGTGCAGCTGCTGCTACATATTTGTTCTATTCTCTTGCTGAATATAATTGCCTAGCCTTCTTATTTTGGGCACCATCCATAACAATGATATTGTAGTTTTATAACCTAGTGGCTTGTAGTCAAATAATCAGTTCTTTTTCTGTAACGTCTCTCTCTCTGAAGATTATTTAGAAACGGGATTTGGTCTTAAAAATAGTTAAGGAATCAATAAATAGAAAGTTTTTATTAGAAATTATGCTGTGAAGCATTGAAAATTGTGGGAGTATATTAATAATGTTTATAAATGTCTTTAGGATAATGGATAAGATTTACATCTTGTTTTAGTTGCTTCAGAC

Coding sequences of Glyma07g38510

Limit To All Plant Sequences

>Glyma07g38510.2   sequence type=CDS   gene model=Glyma07g38510   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCCGCATGATCAGAGAAAAAAGTCGTCTGTAGATATAGACTTCTTTACAGAATACGGCGAAGGGAGTAGATACAAAATAGAGGAAGTAATAGGTAAAGGAAGCTATGGTGTTGTTTGCTCTGCATATGATACACACACTGGAGAAAAGGTTGCAATAAAGAAAATCAATGACATATTTGAACATGTTTCTGATGCCACTCGCATTCTTCGTGAGATCAAGCTTCTTAGACTCTTACACCATCCTGATATTGTGGAGATCAAGCATATTTTGTTACCTCCTTCTAGAAGGGAATTCAAAGATATATATGTTGTTTTTGAGCTTATGGAATCTGATTTACATCAGGTCATCAAAGCAAATGATGATTTGACTCCAGAGCATTATCAGTTTTTTCTCTATCAGCTTCTTCGAGGCTTGAAGTATATACACACAGCAAATGTATTTCACCGAGATCTAAAGCCAAAAAATATTTTAGCAAATGCTGACTGCAAACTGAAGATTTGTGACTTCGGTCTTGCCAGAGTGGCTTTCAATGATACGCCAACTGCTATATTTTGGACAGATTACGTTGCAACAAGGTGGTATAGAGCTCCTGAATTGTGTGGATCCTTTTTCTCCAAGTATACCCCAGCTATAGACATATGGAGCATTGGCTGCATTTTCGCAGAACTTTTAACTGGAAAACCTCTTTTCCCAGGGAAGAATGTTGTCCATCAATTGGACCTCATGACTGATTTTCTTGGAACACCATCTCCTGAAGCCATTGCTAGGGTACGGAATGAGAAAGCTCGGAGATACTTGTGTTGCATGCGTAAGAAGAAGCCAGTTCCTTTCTCCCAAAAGTTTCCTAATGTAGACCCCCTTGCTCTTCGTGTGTTAGAAAGAATGCTGGCATTTGAACCTAAGGATCGACCTACTGCTGAAGAGGCTCTAGCATATCCATATTTTAAAGGCTTGGCCAAGGTTGAGAGAGAACCTTCTGCTCAGCCAGTTACCAAGATGGAATTTGAATTCGAGAGACGTAGGATAACAAAGGAAGATGTGCGAGAGCTTATATACCGAGAGATTCTGGAGTACCATCCAAAGATGTTAAAAGAACATCTAGAGGGAGAAGAGCCAACAGGATTCATGTATCCAAGTGCTGTGGACCACTTCAAGAAACAATTTGCATATCTTGAGGAGCATTATGGAAAAGCTGGAACTGTTACTCCACCCGAGAGGCAACACGCATCATTACCTAGGCCATGTGTGTTGTATTCTGATAACTCAAGACAAAATATGGCTGAGGTTGCAGATGATATCTCCAAGTGTATCATCAAAGAAGTTGAGAAGCCAGCCATGGACAGGACTGGTGGTATCCCAATGACCAGGCTTCCTTTACAAGCTCCTCAAAATATTCAAGGTGTGATGACTGATCGTATTGCTTCAGGTGTTGCTGCGCGGCCCGGAAAAGTTGTAGGTTCAATATTGCATTACAACAACTGTGGGGCAGCAGTTACAGCTGATGCTGAGCAGCGGAGGATGGGTAGAAATCCATCTGTTTCAGCCCAGTATGCTGCTCCAAGCAGTTCATATCCAAGACGAAACCCAAGCTGTAAAAGTGAGAGGGCAGAAGAAGTGATCGAAGGTGCTAATGGACTTCAGACTAAGCCTCAACACATAACACAAAAAGTTGCTGCTGCTGCTCTAGGGGGACCTGGTGGTAATTGGTATTGA

>Glyma07g38510.3   sequence type=CDS   gene model=Glyma07g38510   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCCGCATGATCAGAGAAAAAAGTCGTCTGTAGATATAGACTTCTTTACAGAATACGGCGAAGGGAGTAGATACAAAATAGAGGAAGTAATAGGTAAAGGAAGCTATGGTGTTGTTTGCTCTGCATATGATACACACACTGGAGAAAAGGTTGCAATAAAGAAAATCAATGACATATTTGAACATGTTTCTGATGCCACTCGCATTCTTCGTGAGATCAAGCTTCTTAGACTCTTACACCATCCTGATATTGTGGAGATCAAGCATATTTTGTTACCTCCTTCTAGAAGGGAATTCAAAGATATATATGTTGTTTTTGAGCTTATGGAATCTGATTTACATCAGGTCATCAAAGCAAATGATGATTTGACTCCAGAGCATTATCAGTTTTTTCTCTATCAGCTTCTTCGAGGCTTGAAGTATATACACACAGCAAATGTATTTCACCGAGATCTAAAGCCAAAAAATATTTTAGCAAATGCTGACTGCAAACTGAAGATTTGTGACTTCGGTCTTGCCAGAGTGGCTTTCAATGATACGCCAACTGCTATATTTTGGACAGATTACGTTGCAACAAGGTGGTATAGAGCTCCTGAATTGTGTGGATCCTTTTTCTCCAAGTATACCCCAGCTATAGACATATGGAGCATTGGCTGCATTTTCGCAGAACTTTTAACTGGAAAACCTCTTTTCCCAGGGAAGAATGTTGTCCATCAATTGGACCTCATGACTGATTTTCTTGGAACACCATCTCCTGAAGCCATTGCTAGGGTACGGAATGAGAAAGCTCGGAGATACTTGTGTTGCATGCGTAAGAAGAAGCCAGTTCCTTTCTCCCAAAAGTTTCCTAATGTAGACCCCCTTGCTCTTCGTGTGTTAGAAAGAATGCTGGCATTTGAACCTAAGGATCGACCTACTGCTGAAGAGGCTCTAGCATATCCATATTTTAAAGGCTTGGCCAAGGTTGAGAGAGAACCTTCTGCTCAGCCAGTTACCAAGATGGAATTTGAATTCGAGAGACGTAGGATAACAAAGGAAGATGTGCGAGAGCTTATATACCGAGAGATTCTGGAGTACCATCCAAAGATGTTAAAAGAACATCTAGAGGGAGAAGAGCCAACAGGATTCATGTATCCAAGTGCTGTGGACCACTTCAAGAAACAATTTGCATATCTTGAGGAGCATTATGGAAAAGCTGGAACTGTTACTCCACCCGAGAGGCAACACGCATCATTACCTAGGCCATGTGTGTTGTATTCTGATAACTCAAGACAAAATATGGCTGAGGTTGCAGATGATATCTCCAAGTGTATCATCAAAGAAGTTGAGAAGCCAGCCATGGACAGGACTGGTGGTATCCCAATGACCAGGCTTCCTTTACAAGCTCCTCAAAATATTCAAGTTGCTTCAGGTGTTGCTGCGCGGCCCGGAAAAGTTGTAGGTTCAATATTGCATTACAACAACTGTGGGGCAGCAGTTACAGCTGATGCTGAGCAGCGGAGGATGGGTAGAAATCCATCTGTTTCAGCCCAGTATGCTGCTCCAAGCAGTTCATATCCAAGACGAAACCCAAGCTGTAAAAGTGAGAGGGCAGAAGAAGTGATCGAAGGTGCTAATGGACTTCAGACTAAGCCTCAACACATAACACAAAAAGTTGCTGCTGCTGCTCTAGGGGGACCTGGTGGTAATTGGTATTGA

Predicted protein sequences of Glyma07g38510

Limit To All Plant Sequences

>Glyma07g38510.2   sequence type=predicted peptide   gene model=Glyma07g38510   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MPHDQRKKSSVDIDFFTEYGEGSRYKIEEVIGKGSYGVVCSAYDTHTGEKVAIKKINDIFEHVSDATRILREIKLLRLLHHPDIVEIKHILLPPSRREFKDIYVVFELMESDLHQVIKANDDLTPEHYQFFLYQLLRGLKYIHTANVFHRDLKPKNILANADCKLKICDFGLARVAFNDTPTAIFWTDYVATRWYRAPELCGSFFSKYTPAIDIWSIGCIFAELLTGKPLFPGKNVVHQLDLMTDFLGTPSPEAIARVRNEKARRYLCCMRKKKPVPFSQKFPNVDPLALRVLERMLAFEPKDRPTAEEALAYPYFKGLAKVEREPSAQPVTKMEFEFERRRITKEDVRELIYREILEYHPKMLKEHLEGEEPTGFMYPSAVDHFKKQFAYLEEHYGKAGTVTPPERQHASLPRPCVLYSDNSRQNMAEVADDISKCIIKEVEKPAMDRTGGIPMTRLPLQAPQNIQGVMTDRIASGVAARPGKVVGSILHYNNCGAAVTADAEQRRMGRNPSVSAQYAAPSSSYPRRNPSCKSERAEEVIEGANGLQTKPQHITQKVAAAALGGPGGNWY*

>Glyma07g38510.3   sequence type=predicted peptide   gene model=Glyma07g38510   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MPHDQRKKSSVDIDFFTEYGEGSRYKIEEVIGKGSYGVVCSAYDTHTGEKVAIKKINDIFEHVSDATRILREIKLLRLLHHPDIVEIKHILLPPSRREFKDIYVVFELMESDLHQVIKANDDLTPEHYQFFLYQLLRGLKYIHTANVFHRDLKPKNILANADCKLKICDFGLARVAFNDTPTAIFWTDYVATRWYRAPELCGSFFSKYTPAIDIWSIGCIFAELLTGKPLFPGKNVVHQLDLMTDFLGTPSPEAIARVRNEKARRYLCCMRKKKPVPFSQKFPNVDPLALRVLERMLAFEPKDRPTAEEALAYPYFKGLAKVEREPSAQPVTKMEFEFERRRITKEDVRELIYREILEYHPKMLKEHLEGEEPTGFMYPSAVDHFKKQFAYLEEHYGKAGTVTPPERQHASLPRPCVLYSDNSRQNMAEVADDISKCIIKEVEKPAMDRTGGIPMTRLPLQAPQNIQVASGVAARPGKVVGSILHYNNCGAAVTADAEQRRMGRNPSVSAQYAAPSSSYPRRNPSCKSERAEEVIEGANGLQTKPQHITQKVAAAALGGPGGNWY*

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