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Report for Sequence Feature Glyma07g38465

Feature Type:gene_model
Chromosome:Gm07
Start:43198182
stop:43199597
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma07g38465
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT4G34131AT Annotation by Michelle Graham. TAIR10: UDP-glucosyl transferase 73B3 | chr4:16343268-16344713 REVERSE LENGTH=481 SoyBaseE_val: 1.00E-125ISS
GO:0008152GO-bp Annotation by Michelle Graham. GO Biological Process: metabolic process SoyBaseN/AISS
GO:0051707GO-bp Annotation by Michelle Graham. GO Biological Process: response to other organism SoyBaseN/AISS
GO:0008194GO-mf Annotation by Michelle Graham. GO Molecular Function: UDP-glycosyltransferase activity SoyBaseN/AISS
GO:0016758GO-mf Annotation by Michelle Graham. GO Molecular Function: transferase activity, transferring hexosyl groups SoyBaseN/AISS
GO:0035251GO-mf Annotation by Michelle Graham. GO Molecular Function: UDP-glucosyltransferase activity SoyBaseN/AISS
GO:0080043GO-mf Annotation by Michelle Graham. GO Molecular Function: quercetin 3-O-glucosyltransferase activity SoyBaseN/AISS
KOG1192 KOG UDP-glucuronosyl and UDP-glucosyl transferase JGI ISS
PTHR11926Panther GLUCOSYL/GLUCURONOSYL TRANSFERASES JGI ISS
PTHR11926:SF15Panther UDP-GLUCURONOSYLTRANSFERASE RELATED JGI ISS
PF00201PFAM UDP-glucoronosyl and UDP-glucosyl transferase JGI ISS
UniRef100_Q7XZD0UniRef Annotation by Michelle Graham. Most informative UniRef hit: Isoflavonoid glucosyltransferase n=1 Tax=Glycyrrhiza echinata RepID=Q7XZD0_GLYEC SoyBaseE_val: 0ISS
UniRef100_UPI0002338ED7UniRef Annotation by Michelle Graham. Best UniRef hit: UPI0002338ED7 related cluster n=1 Tax=unknown RepID=UPI0002338ED7 SoyBaseE_val: 0ISS

Expression Patterns of Glyma07g38465
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma07g38465 not represented in the dataset
Glyma07g38465 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma07g38465
ParalogEvidenceComments
Glyma17g02280 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma07g38465 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.07g254700 Wm82.a2.v1IGC As supplied by JGI

References for Glyma07g38465
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma07g38465
>Glyma07g38465.1   sequence type=CDS   gene model=Glyma07g38465   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGACGTGAAAGAACGACCACTGAAACTTTACTTCATTCCATACCTTGCCGCGGGTCACATGATCCCTCTATGCGACATAGCCCAGTTCTTCGCCTCACGTGGCCACCATGTGACCATCATCACCACCCCTTCCAACGCCGAAATCCTTCACCAGTCCAAAAACTTCCGCGTCCACACCTTCGACTTCCCTTCCGAAGAAGTAGGCCTCCCTGACGGCGTCGAAAACTTATCCGCCGTCACCGACCTCGAAAAATCCTACAGAATCTACATCGCCGCCACCACACTGCTCCGCGAACCCATCGAGAGTTTCGTGGAGCGGGACCCACCGGACTGCATAGTTGCCGATTTCCTATACTGCTGGGTGGAAGACTTGGCAAAAAAGCTCCGCATACCGTGGCTTGTTTTCAACGGATTCTCCCTCTTCTCCATTTGCGCCATGGAGTCCGTCAAAAAGCACCGCATCGGCGATGGTCCCTTCGTCATTCCAGATTTCCCCGACCACGTCACCATCAAATCAACCCCACCCAAGGACATGCGAGAATTCTTGGAACCCCTTCTCACGGCAGCGCTCAAGAGCAACGGCTTCATCATCAACAACTTCGCCGAGCTAGACGGTGAGGAGTACCTCCGCCACTACGAGAAAACCACGGGCCACAAGGCCTGGCACCTTGGCCCAGCGTCCCTCGTTCGGAGAACCGAGATGGAGAAAGCAGAGAGGGGGCAAAAGAGCGTGGTGAGTACGCACGAGTGCCTGAGTTGGCTCGACTCGAAGCGAGTCAACTCGGTGGTGTACGTAAGTTTTGGGAGCCTCTGCTATTTCCCGGATAAGCAGCTTTACGAGATAGCATGCGGGATGGAAGCGTCGGGTTATGAATTCATATGGGTGGTTCCGGAGAAGAAAGGGAAGGAAGAAGAGAGCGAGGAAGAGAAGGAGAAGTGGCTGCCAAAGGGGTTTGAAGAGAGGAAGAAGGGGATGATTATCAAGGGGTGGGCCCCACAGGTGGTGATTCTGGAGCACCCTGCGGTTGGTGCGTTTTTGACGCATTGTGGGTGGAACTCCACGGTGGAGGCGGTGAGTGCTGGGGTTCCCATGATTACGTGGCCGGTGCACAGCGATCAGTTCTACAACGAAAAGTTAATAACTCAGGTGCGGGGTATTGGGGTGGAGGTGGGTGCAGAGGAGTGGAACCTCAGTGCTTACTTCCAGACCCAGAAGCTGCTGCCCAGAGATCGCATAGAGATGGCTGTGAGGACCCTCATGGACGTTTCTGATCAAGCCCTGCAAATCAGACGCCAAGCGCAAAACTTTAGCAGAATCGCAAGACAAGCTGTTCAAGTGGCAGGCTCATCATACAATAATTTAACAGCCTTGATTCATTATGTAAAACGATTCAGAGACTCTGCTGAGGGATAA
Predicted protein sequences of Glyma07g38465
>Glyma07g38465.1   sequence type=predicted peptide   gene model=Glyma07g38465   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MDVKERPLKLYFIPYLAAGHMIPLCDIAQFFASRGHHVTIITTPSNAEILHQSKNFRVHTFDFPSEEVGLPDGVENLSAVTDLEKSYRIYIAATTLLREPIESFVERDPPDCIVADFLYCWVEDLAKKLRIPWLVFNGFSLFSICAMESVKKHRIGDGPFVIPDFPDHVTIKSTPPKDMREFLEPLLTAALKSNGFIINNFAELDGEEYLRHYEKTTGHKAWHLGPASLVRRTEMEKAERGQKSVVSTHECLSWLDSKRVNSVVYVSFGSLCYFPDKQLYEIACGMEASGYEFIWVVPEKKGKEEESEEEKEKWLPKGFEERKKGMIIKGWAPQVVILEHPAVGAFLTHCGWNSTVEAVSAGVPMITWPVHSDQFYNEKLITQVRGIGVEVGAEEWNLSAYFQTQKLLPRDRIEMAVRTLMDVSDQALQIRRQAQNFSRIARQAVQVAGSSYNNLTALIHYVKRFRDSAEG*






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