SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research


Warning: Undefined variable $sxsome in /var/www/html/include/SeqFeatClass.php on line 665

Warning: Undefined variable $sstart in /var/www/html/include/SeqFeatClass.php on line 665

Warning: Undefined variable $send in /var/www/html/include/SeqFeatClass.php on line 665

Warning: get_headers(): php_network_getaddresses: getaddrinfo for bar.utoronto.ca failed: Temporary failure in name resolution in /var/www/html/include/SeqFeatClass.php on line 1018

Warning: get_headers(https://bar.utoronto.ca/api/efp_image/efp_soybean/soybean/Absolute/Glyma07g38350): Failed to open stream: php_network_getaddresses: getaddrinfo for bar.utoronto.ca failed: Temporary failure in name resolution in /var/www/html/include/SeqFeatClass.php on line 1018

Warning: Trying to access array offset on false in /var/www/html/include/SeqFeatClass.php on line 1019

Warning: get_headers(): php_network_getaddresses: getaddrinfo for bar.utoronto.ca failed: Temporary failure in name resolution in /var/www/html/include/SeqFeatClass.php on line 1020

Warning: get_headers(https://bar.utoronto.ca/api/efp_image/efp_soybean/soybean_severin/Absolute/Glyma07g38350): Failed to open stream: php_network_getaddresses: getaddrinfo for bar.utoronto.ca failed: Temporary failure in name resolution in /var/www/html/include/SeqFeatClass.php on line 1020

Warning: Trying to access array offset on false in /var/www/html/include/SeqFeatClass.php on line 1021

Deprecated: preg_match(): Passing null to parameter #2 ($subject) of type string is deprecated in /var/www/html/include/SeqFeatClass.php on line 1025

Deprecated: preg_match(): Passing null to parameter #2 ($subject) of type string is deprecated in /var/www/html/include/SeqFeatClass.php on line 1031

Report for Sequence Feature Glyma07g38350

Feature Type:gene_model
Chromosome:Gm07
Start:43113016
stop:43114420
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma07g38350
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT3G21570AT Annotation by Michelle Graham. TAIR10: unknown protein; Has 43 Blast hits to 43 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 43; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr3:7600297-7600707 REVERSE LENGTH=136 SoyBaseE_val: 8.00E-21ISS
GO:0008150GO-bp Annotation by Michelle Graham. GO Biological Process: biological process SoyBaseN/AISS
GO:0009860GO-bp Annotation by Michelle Graham. GO Biological Process: pollen tube growth SoyBaseN/AISS
GO:0005634GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nucleus SoyBaseN/AISS
GO:0003674GO-mf Annotation by Michelle Graham. GO Molecular Function: molecular function SoyBaseN/AISS
UniRef100_Q8H2A8UniRef Annotation by Michelle Graham. Most informative UniRef hit: PRAS-rich protein n=1 Tax=Ananas comosus RepID=Q8H2A8_ANACO SoyBaseE_val: 2.00E-06ISS
UniRef100_UPI0002338D7CUniRef Annotation by Michelle Graham. Best UniRef hit: UPI0002338D7C related cluster n=1 Tax=unknown RepID=UPI0002338D7C SoyBaseE_val: 7.00E-144ISS

Expression Patterns of Glyma07g38350
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma07g38350 not represented in the dataset
Glyma07g38350 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma07g38350
ParalogEvidenceComments
Glyma17g02410 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma07g38350 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.07g253400 Wm82.a2.v1IGC As supplied by JGI

References for Glyma07g38350
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma07g38350
>Glyma07g38350.2   sequence type=CDS   gene model=Glyma07g38350   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCTATATATCAGCCTCCTCCACCTAGCACTTGCTCCAATTCACTACCACCAAACACAACACAACACAGCATACCGTGTTTCATTTTCTCTCACACACAAACCTCCTTCGTTTTCATTTACTTCTCAGGAGATTTTGCGACCTCAGGACTGCTTGGTAGAACGAATCAGGGCTCCTCCGGCTGACTTTTCCCGGCGGAGGAGTTCCGGTAATTACTGTAATTATTATTACTACAACAACAACAACAACCATGTCGCCACTTCCAGGTCGTGCCGGAAGCCTGTTAGCCGACCCGACCAAAGGAAACGGGCTGCTCCCGGTTCTGCCCAGCCGGTGGTGGCGGAGGCCGCGGCGGCGGTGTTGAAGAGACCGAGCCGTGATGATTCAAGGGTGGCCAGGAGCCAAAGTTTGGAGATGACTACGATTCTACGTAGGGGCCAGTCGCTTGATTCGGCTGTGAAGAGCGAGGTGTACGCCGGATCTGCGTTCGCGGTGTCTCCGTCGCCGGAAGCGCTTCCTCTGCCGTCTTTTTCGACGAAGAAGCAGGACTCAGTGGCGGTTGATGACTCCGCCACGCGAGATCTGAGGCGTCTGCTCCGCCTCGAATGA
Predicted protein sequences of Glyma07g38350
>Glyma07g38350.2   sequence type=predicted peptide   gene model=Glyma07g38350   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MLYISLLHLALAPIHYHQTQHNTAYRVSFSLTHKPPSFSFTSQEILRPQDCLVERIRAPPADFSRRRSSGNYCNYYYYNNNNNHVATSRSCRKPVSRPDQRKRAAPGSAQPVVAEAAAAVLKRPSRDDSRVARSQSLEMTTILRRGQSLDSAVKSEVYAGSAFAVSPSPEALPLPSFSTKKQDSVAVDDSATRDLRRLLRLE*






Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA
 
USDA Logo
Iowa State University Logo