Glyma07g38223 - SoyBase

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Report for Sequence Feature Glyma07g38223

Feature Type:	gene_model
Chromosome:	Gm07
Start:	43047886
stop:	43051773
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma07g38223

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G18670	AT	Annotation by Michelle Graham. TAIR10: Ankyrin repeat family protein \| chr3:6424135-6426471 REVERSE LENGTH=598	SoyBase	E_val: 1.00E-42	ISS
KOG4412	KOG	26S proteasome regulatory complex, subunit PSMD10	JGI		ISS
UniRef100_G7IFK1	UniRef	Annotation by Michelle Graham. Best UniRef hit: Serine/threonine protein phosphatase 6 regulatory ankyrin repeat subunit A n=1 Tax=Medicago truncatula RepID=G7IFK1_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_G7IFK1	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Serine/threonine protein phosphatase 6 regulatory ankyrin repeat subunit A n=1 Tax=Medicago truncatula RepID=G7IFK1_MEDTR	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma07g38223

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma07g38223 not represented in the dataset	Glyma07g38223 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma07g38223

Paralog	Evidence	Comments
Glyma17g02510	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma07g38223 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.07g252400	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma07g38223

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma07g38223

Limit To All Plant Sequences

>Glyma07g38223.1   sequence type=CDS   gene model=Glyma07g38223   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGTGGAGGTAGTTGAGATTGAAAGTTTGTTTAACTATGCCATGAAGGGGCAATGGAAAGAAGTGCTAGAGGTCTGCAAGAACAACCCTCGAGCGTTGGAAACTAAAGTCACAAAAGCAGAAGACAGTGTTTTACACATCGCTGTCTATGTGGGCCAAACCATTTTTTTGACCACCCTTCTTGAGAACATTAATGAAGATGTCTCTCTTGCAATCCTAAATATACCAAACTCAAAGGGAAACACTCCTTTGCATCTAGCCGCAGAGCTTGGGAAAGTGGACATTTGCAACACTATAGCCAAAAGAGACCCCAAACTCATTTTGTGTCGCAATTTTAAAGATGAGACCCCTCTTTACCTGGCAGCAATTCATGGTACCAAAGATGCATTTTATTGTCTCCATGGTCACCTACAAAACAAAGATGATTACTCGCCATGTATTAAGAGCAACGGGGACACTATTCTTCACTCTACCATCTCTAATGAATACTTTGGTTTGGCACTTCAAATAATTCGGATGTACCCAAATCTTGCGGATGCTGTCAATCAGGATGGGTTATCACCTCTTCATATTCTTGCTATGAAGCCAAATTGTTTTAAAAGCAGCACGCGGATGGAGTTTTTGGATCGTATGATCTATAATTGTTTGCTTGTGAATGAGTTGAAGGAAGAGACAGAGGACCTAAGTAGTAATGGAGAAGATACACATTTTAACTATGCAATGAACTACAGAACATGCTTCAGCTTCTTAAATTTGTTGAAGAATGCAGTTAAAGCTATAACAATAGGTACAAAGGATAGTAATGCTGGAACTGATGATGAAGAGAATCTCCCAAAATCATCCCCCATTAACTTTGTGCAAGAGCGAGCAAAGAAAGAAAATAAACTCTACCGATTCCCTCCGAATTGGGAAGTGCTGATCCGATTTCTGACCATTATGATGAAGGCTTTGCTAATACTTTTTGGAGTGGGAGCATCTTGGATAGGAAAAATCCAACGAAGGAAGGAGAAACACATTTGGGCTAAGCTAGTGATGGATGAATTGATTGAGAGAGCTTCTCTGTACAAGTATGACTATACTGGAAAAAGCTCTTTTGTTCTTCAGCATGACAATGATATGGAAAACAAAGATAGTCACGTGAACAAAAAAACTATTGAGAAAAAGAGAAGTGTGTCACCAATTTTAATTGCAGCAAAGATGGGAGTAAATGAAATGGTGGAGAAGGTCCTAGATACCTTCCCAGTGGCCATCCATGATGTAGATTCTGACAACAAGAATGTTGTTCTTTTGGCTATAGAGAACAGGCAGCCTCGTGTGTACAAGCTGCTGGCAAAGAGGAATTTGGTAAAGGAAAGTGCATTTTGTCACATAGACAATCAAGGTAACAGTGCATTGCACCTTGCTGCCATGTATAGGGAACATAGACCTTGGCGTGTCCCTGGTGATGCCATGCAAATGCAGTGGGAATATAAGTGGTACAAGCTTGTTAAGAATTCCATGCCACCAAATTTCTATGCACGTTACAACAACAAGGGACAAACAGCTAAACAGGTTTTCATCATCACTCACCAACCACTCGTGAGAGAGGGAAGGAAATGGCTGTCCAAGACCTCAGAGTCATGCTCACTAGTTGCAGCACTTGTTGCAACAGTAGCATTCACAACCTCAACAGCAATACCAGGTGGTGCCAATGAGGTAACTGGTGTGCCAGTGTTGAGTGGACAACCTGCTTTCAAAGTCTTCGCTGTGGCATCACTTGTGGCACTGTGCTCCTCAGTGACAGCCCTTGTTTTGTTTCTTTCAATACTCACATCAAGGTTCCAAGAAAAGGATGTTGCTATGGACTTACCAAAGAAGCTTCTCATGGGAATGACTTCACTTTGGACATCTATAGCATCAATATTGGTCTCGTTTTGTGCAGGACATTTCTTCATCATTGAAGATGGAATGAAATCCTCAGTTTATCTCATATATGCTGTGACATGTTTGCCAGTGTCGTTTTTTGTGTTGGTTCAACTCCCTCTTTACTTGGATCTCATGTTGGCTATATTTCGGAAGGTTCCTCAACGTGTTTATAAGGTCTTCTCCCATTAG

Predicted protein sequences of Glyma07g38223

Limit To All Plant Sequences

>Glyma07g38223.1   sequence type=predicted peptide   gene model=Glyma07g38223   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MVEVVEIESLFNYAMKGQWKEVLEVCKNNPRALETKVTKAEDSVLHIAVYVGQTIFLTTLLENINEDVSLAILNIPNSKGNTPLHLAAELGKVDICNTIAKRDPKLILCRNFKDETPLYLAAIHGTKDAFYCLHGHLQNKDDYSPCIKSNGDTILHSTISNEYFGLALQIIRMYPNLADAVNQDGLSPLHILAMKPNCFKSSTRMEFLDRMIYNCLLVNELKEETEDLSSNGEDTHFNYAMNYRTCFSFLNLLKNAVKAITIGTKDSNAGTDDEENLPKSSPINFVQERAKKENKLYRFPPNWEVLIRFLTIMMKALLILFGVGASWIGKIQRRKEKHIWAKLVMDELIERASLYKYDYTGKSSFVLQHDNDMENKDSHVNKKTIEKKRSVSPILIAAKMGVNEMVEKVLDTFPVAIHDVDSDNKNVVLLAIENRQPRVYKLLAKRNLVKESAFCHIDNQGNSALHLAAMYREHRPWRVPGDAMQMQWEYKWYKLVKNSMPPNFYARYNNKGQTAKQVFIITHQPLVREGRKWLSKTSESCSLVAALVATVAFTTSTAIPGGANEVTGVPVLSGQPAFKVFAVASLVALCSSVTALVLFLSILTSRFQEKDVAMDLPKKLLMGMTSLWTSIASILVSFCAGHFFIIEDGMKSSVYLIYAVTCLPVSFFVLVQLPLYLDLMLAIFRKVPQRVYKVFSH*

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