Glyma07g38210 - SoyBase

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Report for Sequence Feature Glyma07g38210

Feature Type:	gene_model
Chromosome:	Gm07
Start:	43042471
stop:	43046782
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma07g38210

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G18750	AT	Annotation by Michelle Graham. TAIR10: DNAJ heat shock N-terminal domain-containing protein \| chr5:6255177-6257831 FORWARD LENGTH=884	SoyBase	E_val: 0	ISS
GO:0006457	GO-bp	Annotation by Michelle Graham. GO Biological Process: protein folding	SoyBase	N/A	ISS
GO:0009644	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to high light intensity	SoyBase	N/A	ISS
GO:0042542	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to hydrogen peroxide	SoyBase	N/A	ISS
GO:0005737	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm	SoyBase	N/A	ISS
GO:0031072	GO-mf	Annotation by Michelle Graham. GO Molecular Function: heat shock protein binding	SoyBase	N/A	ISS
GO:0051082	GO-mf	Annotation by Michelle Graham. GO Molecular Function: unfolded protein binding	SoyBase	N/A	ISS
PTHR10825	Panther	RING FINGER PROTEIN	JGI		ISS
PTHR10825:SF4	Panther	gb def: agcp5478 [anopheles gambiae str. pest]	JGI		ISS
PF00226	PFAM	DnaJ domain	JGI		ISS
PF11926	PFAM	Domain of unknown function (DUF3444)	JGI		ISS
UniRef100_G7JJ17	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: DnaJ homolog subfamily B member n=1 Tax=Medicago truncatula RepID=G7JJ17_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_I1KN40	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1KN40_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma07g38210

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma07g38210

Paralog	Evidence	Comments
Glyma17g02520	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma07g38210 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.07g252300	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma07g38210

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma07g38210

Limit To All Plant Sequences

>Glyma07g38210.1   sequence type=CDS   gene model=Glyma07g38210   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGACTGCAATAAAGAAGAGGCCTTAAGGGCCAAGGACATTGCTGAAAAGAAGATGGAAAACAGGGATTTTGTGGGGGCTCGCAAAATTGCTCTAAAGGCTCAGCAGCTGTACCCTGATCTGGAAAATATAGCTCAAATGCTTGTTGTTTGTGATGTGCACTGCTCTTCTGAGCAGAAATTATTTGGTAATGAGATGGATTGGTATGAAATTCTTCAGGTCGAACAGACAGCTGGTGATGCAATAATTAAGAAGCAATATAGGAAGTTCGCTCTCCAACTTCATCCTGACAAAAACAACTTTGCTGGTGCAGAATCTGCATTCAAGTTGATTGGGGAAGCTCAAAGAGTGCTTTTGGACAGAGAAAAACGTTCTCTTTTTGACATGAAGCGTAGAGTTCCAACGAACAAACCTGCTATGTCACGTTTTAATTCTACAGTGAAGAACAATGTTAGACCCAACTCGTCATGCTCAAATTCTCAGCAGCAGCAGCAATCTAGGCAGCCAGCACAGCAGCAGCAAAATGGTGACCGCCCTACTTTTTGGACGGTCTGCCCGTTTTGTTCTGTTAGGTATCAATATTACAAAGAAATTTTAAATAAATCTCTTCGCTGTCAAAATTGCAAAAGGCCCTTTGTTGCATATGAAGTGAATGTACAAGGTACATCATCACCAGCAACTAATTCAACTCAGCAAGCTTCTGACCAGCAGAAAGATGGTTTGAATCATGGTGCTTTCAAGATGGGTGCAGGATCTCAAGGCAATTCGCAGGCTGAGAAGTCCAATATGGGGCCTTATGATAAAAAAAGACCTAGTAATGTCTCTGGAAAACCAAATGGAAAGAGGAAGAGGAAGCAGGTGGCAGAATCCAGTGAAGGTTCTGATACTATGAGCAGCAATGATTCTGAAGAAGATATAGTTGCTGGCAAGGATGGTAATTCTAGTGTAGAAAACCATTCATCTCCAAGAGAAGGGCATCCACGCAGATCTACACGTCAAAAGCATCAAGTTTCCTACAAGGAGAATGTGAAAAACAATGATAATGGCTTCTTGAAACCACGTGGTGATGGTGAAAGTCATGGCAAGACAACTAAAATGAATGATCAGAAAGGTTTAGCTGCTGAACATAAAGAAGGAAAACAGAAGCAACACTTGTATTCTGAAAGAAATGAGGAAACTAAGACGGATAGGGGAAAAGATGCAGTGGGAGGGTCAACACAGATGGATGGAAATTCAGAGCATTCTCCAGATTCAACCTCCAAAGCAGAAAATCATCCTAATGTTTATGTCTATCCTGATGCAGAGTTCAATGATTTTTTCAAGGGCAAGAATAAAGAATGTTTTGCTGCTGGGCAGATATGGGGTATTTATGATACAGCAGAAGGCATGCCTAGATTCTACGCTTTAATCAGAAAAGTTTTGTCTCCTGGATTCAAGCTGCAGATAATATGGTTTGAATCACATCCGGATTGCAAGGATGAAATCAACTGGGTAAATGAGGAATTGCCTGTTGCTTGTGGTAAATATAAACTTGGTGACACTGACATCACTGAAGATCATCTAATGTTCTCTCATCTGGTTTTGTGTGAAAAAATTAGCCGTAATACTTTTAAAGTGTATCCTAGAAAGGGCGAAACTTGGGCCCTTTTTAAAAATTGGGATATTAAATGGTACATGGATGTGAAATCTCATCAGCTCTATGAATATGAGTTTGTTGAAATCTTGACAGATTATGTTGAAGGTAAGGGTGTATATGTTGCATACATGGCTAAGTTGAAAGGTTTTGTAAGTCTCTTCCTTCGAAATATTAATGAAGAAAACAAATCATTTCAAATTCCACCACAGGAATTATTTAGATTCTCTCACAGGGTTCCGTCCTTCAAATTGACTGGTCAGGAAGGAGTGGGTGTACCAGCAGGATCTTATGAACTTGATCCTGGAGCTTTGCCAGTGAATCTTGAAGAGATTGCTGTTCCTGAAAATTCGGATGTGAAGGTTGGTCGTAGTTCATCTGGTGGTGAGAATACAAGGCCTTCAAATAGATCAGAACCCCTTATGACATCTGAGGGAGATGCATCTATTCCCAAGGTTAATTTGGAAAGAAGCAATTTGGCAACAGAGAACAAGGATTCTGTTGATGACAGTGATAATTGTTGTGCTCCTCCAGAATCGAGCCCAGAAGCTATCAATGTTCCAGATACTCAATTCTTTGATTTTGATGGTGGGAGAGCCCTTGAAAAGTTTCAGATTGGTCAGATTTGGGCATTTTACAGTGATGAAGATGGATTGCCAAAATATTACGGTCAGATTAAAAAGATTGAGACAAGCCCAGATCTTGAATTGCATGTTTACTGGCTTACTTGCTGCTGGCTACCAGAGAATACCATTAAATGGGAAGACAAAGATATTCTTATTTCCTGTGGCAGATTTAAAGTTAATGAAACACATGATTTTCTCAGTGTTTATAGTACCACCTCTTGTGTTTCACATCAAGTACATGCCGATGCTGTTGGTAAGAATAAGAATTATGCCATCTTTCCGAGGAAAGGTGACGTTTGGGCGTTATATAGAAAATGGACAAATAAAATGAAATGTTTTGAGATGGAAAATTGCGAGTATGACATAGTTGAAGTTGTTGAAGAAACTGATCTGTTCATAAATGTTTTAGTTCTGGAGTTTGTTAGTGGGTATACTTCAGTTTTCCGGGGCAAATCAAATGAAGGATCATCTGTCAATCTAAGAATACCCAGAAAAGAGTTGCTTAGGTTCTCCCACCAAATCCCAGCTTTCAAACTGACAGAAGAGCATGGCAATCTTAAGGGCTTCTGGGAACTTGATCCAGGTGCACTACCAATGCATTATTATGGCTTGAAATGA

Predicted protein sequences of Glyma07g38210

Limit To All Plant Sequences

>Glyma07g38210.1   sequence type=predicted peptide   gene model=Glyma07g38210   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MDCNKEEALRAKDIAEKKMENRDFVGARKIALKAQQLYPDLENIAQMLVVCDVHCSSEQKLFGNEMDWYEILQVEQTAGDAIIKKQYRKFALQLHPDKNNFAGAESAFKLIGEAQRVLLDREKRSLFDMKRRVPTNKPAMSRFNSTVKNNVRPNSSCSNSQQQQQSRQPAQQQQNGDRPTFWTVCPFCSVRYQYYKEILNKSLRCQNCKRPFVAYEVNVQGTSSPATNSTQQASDQQKDGLNHGAFKMGAGSQGNSQAEKSNMGPYDKKRPSNVSGKPNGKRKRKQVAESSEGSDTMSSNDSEEDIVAGKDGNSSVENHSSPREGHPRRSTRQKHQVSYKENVKNNDNGFLKPRGDGESHGKTTKMNDQKGLAAEHKEGKQKQHLYSERNEETKTDRGKDAVGGSTQMDGNSEHSPDSTSKAENHPNVYVYPDAEFNDFFKGKNKECFAAGQIWGIYDTAEGMPRFYALIRKVLSPGFKLQIIWFESHPDCKDEINWVNEELPVACGKYKLGDTDITEDHLMFSHLVLCEKISRNTFKVYPRKGETWALFKNWDIKWYMDVKSHQLYEYEFVEILTDYVEGKGVYVAYMAKLKGFVSLFLRNINEENKSFQIPPQELFRFSHRVPSFKLTGQEGVGVPAGSYELDPGALPVNLEEIAVPENSDVKVGRSSSGGENTRPSNRSEPLMTSEGDASIPKVNLERSNLATENKDSVDDSDNCCAPPESSPEAINVPDTQFFDFDGGRALEKFQIGQIWAFYSDEDGLPKYYGQIKKIETSPDLELHVYWLTCCWLPENTIKWEDKDILISCGRFKVNETHDFLSVYSTTSCVSHQVHADAVGKNKNYAIFPRKGDVWALYRKWTNKMKCFEMENCEYDIVEVVEETDLFINVLVLEFVSGYTSVFRGKSNEGSSVNLRIPRKELLRFSHQIPAFKLTEEHGNLKGFWELDPGALPMHYYGLK*

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