Glyma07g38170 - SoyBase

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Report for Sequence Feature Glyma07g38170

Feature Type:	gene_model
Chromosome:	Gm07
Start:	43003802
stop:	43007090
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma07g38170

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G08820	AT	Annotation by Michelle Graham. TAIR10: vamp/synaptobrevin-associated protein 27-2 \| chr1:2821810-2824412 REVERSE LENGTH=386	SoyBase	E_val: 1.00E-57	ISS
GO:0046907	GO-bp	Annotation by Michelle Graham. GO Biological Process: intracellular transport	SoyBase	N/A	ISS
GO:0005789	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: endoplasmic reticulum membrane	SoyBase	N/A	ISS
GO:0005886	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane	SoyBase	N/A	ISS
GO:0005198	GO-mf	Annotation by Michelle Graham. GO Molecular Function: structural molecule activity	SoyBase	N/A	ISS
KOG0439	KOG	VAMP-associated protein involved in inositol metabolism	JGI		ISS
PTHR10809	Panther	VESICLE-ASSOCIATED MEMBRANE PROTEIN (VAMP)	JGI		ISS
PTHR10809:SF6	Panther	VESICLE-ASSOCIATED MEMBRANE PROTEIN-ASSOCIATED PRO	JGI		ISS
PF00635	PFAM	MSP (Major sperm protein) domain	JGI		ISS
UniRef100_C6T767	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=C6T767_SOYBN	SoyBase	E_val: 0	ISS
UniRef100_G7JJ25	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Vesicle-associated membrane protein-associated protein SCS2 n=1 Tax=Medicago truncatula RepID=G7JJ25_MEDTR	SoyBase	E_val: 6.00E-164	ISS

Expression Patterns of Glyma07g38170

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma07g38170 not represented in the dataset	Glyma07g38170 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma07g38170

Paralog	Evidence	Comments
Glyma17g02550	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma07g38170 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.07g252000	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma07g38170

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma07g38170

Limit To All Plant Sequences

>Glyma07g38170.3   sequence type=transcript   gene model=Glyma07g38170   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
GTGATTAATGCGCTAAAAAGGTTCAATTTTAGATGAAAATAAGAAATTAAGAAAGGAAAAAGAGCAGGTGGTGAATGGGTACAACTAGAACAGCAGAGTGTGAGGCCCACCAGCGTAACCGACGACGCCAACTATCCCATTCCAAAGGTTCTATCAAGCCTTTTCCTCTACTCTCCCACTTTGCATTTTCCCATGGCTACCGAGCTTCTTCAAATCGAACCCGCCGAGCTCCGATTCGTCTTTGAATTGAAGAAACAAAGTTCATGTTTGGTTCAACTTGCCAACACCACCGATCACTTTATTGCTTTTAAGGTAAAAACAACTTCACCCAAAAAATATTGCGTCAGACCCAACATAGGCATCGTCAAGCCCAATGATAAATGTGATTTTACTGTTACTATGCAAGCTCAGCGCATGGCACCGCCTGATATGCTGTGCAAAGACAAATTTCTCATTCAAAGCACAGTTGTCCCGTTTGGAACCACAGAAGATGACATCACCTCTGATATGTTTTCAAAAGACAGCGGAAAGTATATTGAGGAGAAGAAACTAAGGGTAGTCCTCATCAGTCCGCCATCTTCTCCGGTGTTGCTTCCAGTAAATGGTGATATGAAGCATGATCCATCCAACGAAATTTATGTGCAAAAAGATAGGGTGCCCAGTGGAGTTGAAAACATACCTCCCCCTTGTAAAGTTTCTGATGAGGTTAAAGGTTTGGAACCAGCCCAGGATATGAAGGAGGATAGAGAAGATGAGGATATTGTCCCAAGACAAGCTGAGAATGTTGGTGACATGAAGCCAGCAAAAGATGATATGCAATTGAATTTAACTAACGAATCTGAGGAATTGAAGTCAAAACTTAGTGTAATGGATTCCAAGCTAAGAGTGGCTGAGGTAACCATCACGAAGCTGAATGAGGAGAGGCACAGGAACACTCAAGAAAAAGATTTGCTTAAGAAAGAGTTGGAGGTGTTGAAGAGGCAAATCAATACGAAAGGAAGTCAGGCTGGTTTTCCATTTCTGTTTGTTTGCATGGTTGCTCTTATCAGCGTGGCAGTTGGATATTATATTCACCCATAAGGGAGAAAAGTGCGTGTATAGGATAGCAGACGTTCTAAAATCATGGATTTCTCCGTAATGACTAGATAGAGGATGGTTCATTTGTTTATTGTGATGGTTTTACTGGACAGATGTTAATATGTGATGTGGGAAGCTTTGGAATTGCATGTAAAGTGAACTAAGCCTTTCAATAGAAGTGTAATAAGCCAGCATTCTGATATTTTGAGCCCAAATCATTGGCCTGT

>Glyma07g38170.4   sequence type=transcript   gene model=Glyma07g38170   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
AGTGATTAATGCGCTAAAAAGGTTCAATTTTAGATGAAAATAAGAAATTAAGAAAGGAAAAAGAGCAGGTGGTGAATGGGTACAACTAGAACAGCAGAGTGTGAGGCCCACCAGCGTAACCGACGACGCCAACTATCCCATTCCAAAGTAACAACTCAACTCAATGACACTTCTTCCCTTCTCTTTCATTTTCATTTCGTTCTTCTTCTCCAATTAGGGTTCTATCAAGCCTTTTCCTCTACTCTCCCACTTTGCATTTTCCCATGGCTACCGAGCTTCTTCAAATCGAACCCGCCGAGCTCCGATTCGTCTTTGAATTGAAGAAACAAAGTTCATGTTTGGTTCAACTTGCCAACACCACCGATCACTTTATTGCTTTTAAGGTAAAAACAACTTCACCCAAAAAATATTGCGTCAGACCCAACATAGGCATCGTCAAGCCCAATGATAAATGTGATTTTACTGTTACTATGCAAGCTCAGCGCATGGCACCGCCTGATATGCTGTGCAAAGACAAATTTCTCATTCAAAGCACAGTTGTCCCGTTTGGAACCACAGAAGATGACATCACCTCTGATATGTTTTCAAAAGACAGCGGAAAGTATATTGAGGAGAAGAAACTAAGGGTAGTCCTCATCAGTCCGCCATCTTCTCCGGTGTTGCTTCCAGTAAATGGTGATATGAAGCATGATCCATCCAACGAAATTTATGTGCAAAAAGATAGGGTGCCCAGTGGAGTTGAAAACATACCTCCCCCTTGTAAAGTTTCTGATGAGGTTAAAGGTTTGGAACCAGCCCAGGATATGAAGGAGGATAGAGAAGATGAGGATATTGTCCCAAGACAAGCTGAGAATGTTGGTGACATGAAGCCAGCAAAAGATGATATGCAATTGAATTTAACTAACGAATCTGAGGAATTGAAGTCAAAACTTAGTGTAATGGATTCCAAGCTAAGAGTGGCTGAGGTAACCATCACGAAGCTGAATGAGGAGAGGCACAGGAACACTCAAGAAAAAGATTTGCTTAAGAAAGAGTTGGAGGTGTTGAAGAGGCAAATCAATACGAAAGGAAGTCAGGCTGGTTTTCCATTTCTGTTTGTTTGCATGGTTGCTCTTATCAGCGTGGCAGTTGGATATTATATTCACCCATAAGGGAGAAAAGTGCGTGTATAGGATAGCAGACGTTCTAAAATCATGGATTTCTCCGTAATGACTAGATAGAGGATGGTTCATTTGTTTATTGTGATGGTTTTACTGGACAGATGTTAATATGTGATGTGGGAAGCTTTGGAATTGCATGTAAAGTGAACTAAGCCTTTCAATAGAAGTGTAATAAGCCAGCATTCTGATATTTTGAGCCCAAATCATTGGCCTGTTCATTAACTTTTCTAGAAATGCTTCCTTTAAAATCCGCCTGAGAGAGACAC

Coding sequences of Glyma07g38170

Limit To All Plant Sequences

>Glyma07g38170.2   sequence type=CDS   gene model=Glyma07g38170   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCTACCGAGCTTCTTCAAATCGAACCCGCCGAGCTCCGATTCGTCTTTGAATTGAAGAAACAAAGTTCATGTTTGGTTCAACTTGCCAACACCACCGATCACTTTATTGCTTTTAAGGTAAAAACAACTTCACCCAAAAAATATTGCGTCAGACCCAACATAGGCATCGTCAAGCCCAATGATAAATGTGATTTTACTGTTACTATGCAAGCTCAGCGCATGGCACCGCCTGATATGCTGTGCAAAGACAAATTTCTCATTCAAAGCACAGTTGTCCCGTTTGGAACCACAGAAGATGACATCACCTCTGATATGTTTTCAAAAGACAGCGGAAAGTATATTGAGGAGAAGAAACTAAGGGTAGTCCTCATCAGTCCGCCATCTTCTCCGGTGTTGCTTCCAGTAAATGGTGATATGAAGCATGATCCATCCAACGAAATTTATGTGCAAAAAGATAGGGTGCCCAGTGGAGTTGAAAACATACCTCCCCCTTGTAAAGTTTCTGATGAGGTTAAAGGTTTGGAACCAGCCCAGGATATGAAGGAGGATAGAGAAGATGAGGATATTGTCCCAAGACAAGCTGAGAATGTTGGTGACATGAAGCCAGCAAAAGATGATATGCAATTGAATTTAACTAACGAATCTGAGGAATTGAAGTCAAAACTTAGTGCTGAGGTAACCATCACGAAGCTGAATGAGGAGAGGCACAGGAACACTCAAGAAAAAGATTTGCTTAAGAAAGAGTTGGAGGTGTTGAAGAGGCAAATCAATACGAAAGGAAGTCAGGCTGGTTTTCCATTTCTGTTTGTTTGCATGGTTGCTCTTATCAGCGTGGCAGTTGGATATTATATTCACCCATAA

>Glyma07g38170.3   sequence type=CDS   gene model=Glyma07g38170   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCTACCGAGCTTCTTCAAATCGAACCCGCCGAGCTCCGATTCGTCTTTGAATTGAAGAAACAAAGTTCATGTTTGGTTCAACTTGCCAACACCACCGATCACTTTATTGCTTTTAAGGTAAAAACAACTTCACCCAAAAAATATTGCGTCAGACCCAACATAGGCATCGTCAAGCCCAATGATAAATGTGATTTTACTGTTACTATGCAAGCTCAGCGCATGGCACCGCCTGATATGCTGTGCAAAGACAAATTTCTCATTCAAAGCACAGTTGTCCCGTTTGGAACCACAGAAGATGACATCACCTCTGATATGTTTTCAAAAGACAGCGGAAAGTATATTGAGGAGAAGAAACTAAGGGTAGTCCTCATCAGTCCGCCATCTTCTCCGGTGTTGCTTCCAGTAAATGGTGATATGAAGCATGATCCATCCAACGAAATTTATGTGCAAAAAGATAGGGTGCCCAGTGGAGTTGAAAACATACCTCCCCCTTGTAAAGTTTCTGATGAGGTTAAAGGTTTGGAACCAGCCCAGGATATGAAGGAGGATAGAGAAGATGAGGATATTGTCCCAAGACAAGCTGAGAATGTTGGTGACATGAAGCCAGCAAAAGATGATATGCAATTGAATTTAACTAACGAATCTGAGGAATTGAAGTCAAAACTTAGTGTAATGGATTCCAAGCTAAGAGTGGCTGAGGTAACCATCACGAAGCTGAATGAGGAGAGGCACAGGAACACTCAAGAAAAAGATTTGCTTAAGAAAGAGTTGGAGGTGTTGAAGAGGCAAATCAATACGAAAGGAAGTCAGGCTGGTTTTCCATTTCTGTTTGTTTGCATGGTTGCTCTTATCAGCGTGGCAGTTGGATATTATATTCACCCATAA

>Glyma07g38170.4   sequence type=CDS   gene model=Glyma07g38170   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCTACCGAGCTTCTTCAAATCGAACCCGCCGAGCTCCGATTCGTCTTTGAATTGAAGAAACAAAGTTCATGTTTGGTTCAACTTGCCAACACCACCGATCACTTTATTGCTTTTAAGGTAAAAACAACTTCACCCAAAAAATATTGCGTCAGACCCAACATAGGCATCGTCAAGCCCAATGATAAATGTGATTTTACTGTTACTATGCAAGCTCAGCGCATGGCACCGCCTGATATGCTGTGCAAAGACAAATTTCTCATTCAAAGCACAGTTGTCCCGTTTGGAACCACAGAAGATGACATCACCTCTGATATGTTTTCAAAAGACAGCGGAAAGTATATTGAGGAGAAGAAACTAAGGGTAGTCCTCATCAGTCCGCCATCTTCTCCGGTGTTGCTTCCAGTAAATGGTGATATGAAGCATGATCCATCCAACGAAATTTATGTGCAAAAAGATAGGGTGCCCAGTGGAGTTGAAAACATACCTCCCCCTTGTAAAGTTTCTGATGAGGTTAAAGGTTTGGAACCAGCCCAGGATATGAAGGAGGATAGAGAAGATGAGGATATTGTCCCAAGACAAGCTGAGAATGTTGGTGACATGAAGCCAGCAAAAGATGATATGCAATTGAATTTAACTAACGAATCTGAGGAATTGAAGTCAAAACTTAGTGTAATGGATTCCAAGCTAAGAGTGGCTGAGGTAACCATCACGAAGCTGAATGAGGAGAGGCACAGGAACACTCAAGAAAAAGATTTGCTTAAGAAAGAGTTGGAGGTGTTGAAGAGGCAAATCAATACGAAAGGAAGTCAGGCTGGTTTTCCATTTCTGTTTGTTTGCATGGTTGCTCTTATCAGCGTGGCAGTTGGATATTATATTCACCCATAA

Predicted protein sequences of Glyma07g38170

Limit To All Plant Sequences

>Glyma07g38170.2   sequence type=predicted peptide   gene model=Glyma07g38170   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MATELLQIEPAELRFVFELKKQSSCLVQLANTTDHFIAFKVKTTSPKKYCVRPNIGIVKPNDKCDFTVTMQAQRMAPPDMLCKDKFLIQSTVVPFGTTEDDITSDMFSKDSGKYIEEKKLRVVLISPPSSPVLLPVNGDMKHDPSNEIYVQKDRVPSGVENIPPPCKVSDEVKGLEPAQDMKEDREDEDIVPRQAENVGDMKPAKDDMQLNLTNESEELKSKLSAEVTITKLNEERHRNTQEKDLLKKELEVLKRQINTKGSQAGFPFLFVCMVALISVAVGYYIHP*

>Glyma07g38170.3   sequence type=predicted peptide   gene model=Glyma07g38170   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MATELLQIEPAELRFVFELKKQSSCLVQLANTTDHFIAFKVKTTSPKKYCVRPNIGIVKPNDKCDFTVTMQAQRMAPPDMLCKDKFLIQSTVVPFGTTEDDITSDMFSKDSGKYIEEKKLRVVLISPPSSPVLLPVNGDMKHDPSNEIYVQKDRVPSGVENIPPPCKVSDEVKGLEPAQDMKEDREDEDIVPRQAENVGDMKPAKDDMQLNLTNESEELKSKLSVMDSKLRVAEVTITKLNEERHRNTQEKDLLKKELEVLKRQINTKGSQAGFPFLFVCMVALISVAVGYYIHP*

>Glyma07g38170.4   sequence type=predicted peptide   gene model=Glyma07g38170   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MATELLQIEPAELRFVFELKKQSSCLVQLANTTDHFIAFKVKTTSPKKYCVRPNIGIVKPNDKCDFTVTMQAQRMAPPDMLCKDKFLIQSTVVPFGTTEDDITSDMFSKDSGKYIEEKKLRVVLISPPSSPVLLPVNGDMKHDPSNEIYVQKDRVPSGVENIPPPCKVSDEVKGLEPAQDMKEDREDEDIVPRQAENVGDMKPAKDDMQLNLTNESEELKSKLSVMDSKLRVAEVTITKLNEERHRNTQEKDLLKKELEVLKRQINTKGSQAGFPFLFVCMVALISVAVGYYIHP*

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