Report for Sequence Feature Glyma07g38120
Feature Type: gene_model
Chromosome: Gm07
Start: 42969713
stop: 42973032
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma07g38120
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT4G15563 AT
Annotation by Michelle Graham. TAIR10: unknown protein; Has 36 Blast hits to 36 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 36; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr4:8891771-8892348 FORWARD LENGTH=167
SoyBase E_val: 2.00E-38 ISS
GO:0008150 GO-bp
Annotation by Michelle Graham. GO Biological Process: biological process
SoyBase N/A ISS
GO:0005739 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion
SoyBase N/A ISS
GO:0003674 GO-mf
Annotation by Michelle Graham. GO Molecular Function: molecular function
SoyBase N/A ISS
PF00646 PFAM
F-box domain
JGI ISS
UniRef100_B9HMP2 UniRef
Annotation by Michelle Graham. Most informative UniRef hit: F-box family protein n=1 Tax=Populus trichocarpa RepID=B9HMP2_POPTR
SoyBase E_val: 7.00E-77 ISS
UniRef100_C6TCL9 UniRef
Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=C6TCL9_SOYBN
SoyBase E_val: 0 ISS
Expression Patterns of Glyma07g38120
Gene expression representations made with eFP at the University of Toronto. Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE Paralogs of Glyma07g38120
Paralog Evidence Comments
Glyma17g02590 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.
Gene model name correspondences to Glyma07g38120 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
Glyma.07g251400 Wm82.a2.v1 IGC As supplied by JGI
References for Glyma07g38120
Coding sequences of Glyma07g38120
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma07g38120.1 sequence type=CDS gene model=Glyma07g38120 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGCAGAAAGGAAAAGCGGATTCTGTCTCCATCCTCAGTTCCCTTCCTGAAGATGTTGCCCTCAAAATTGCTTCGCTGCTTCAGGTGCGGGATTTGTGTGCCTTAGGTTGTTGTTCGAGGTTCTGGAGGGAACTCTGCTTCTCAGATTGCATTTGGGAGTCTCTTGTCAGAAACAGATGGCCCTTACTCTCTTCCTTCCATTTCCCTTCTTCTTCCACTCATTCTCCCAATTTCAAGAAGTGGAGGAAATTGTACTTGGAGAGGCAAGTGGAATTGGGACTTAGAGCAAGGTCTGTCGTGAAGTTTCTGGAAGCTTGTTCTCGTTCTGAGTCACTTGAGGTTGGTGACTATCTGAAAGCTGTTGACACCTTGATTGGTACCATGTTTGGGTTTGAAGACGTGCAGAGGTTCTTGTTCAACCCTCAAATGAATGTGCTGATTAACTTGGTTGGGCTACACTATTGCCTCACAACCCTTGGGATTCCGGGTGATAATCTTGTAGAAGCCCTTCGGACTCATGAGATCTCCGATCGGCGTGTCTGCATCAAGTGGTGGAAAGTTGGTAGATGGTACTATGGCTTCCGCATGAGGGATGAGTCACATTCTCGGTGGGTTTCTTTGGCAGATTTGGCAACAGAAGATGATGAGCATGTTTTGGGAGTGCTTCGCCGAGGTACTGTTCATGAGGTTTTACGTGTTCAGATCTCTGTGGTTGGTCGTCCATCAACACCTTGGTCCTGCCAGATTACCCAGAGATTGGAATAG
Predicted protein sequences of Glyma07g38120
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma07g38120.1 sequence type=predicted peptide gene model=Glyma07g38120 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MQKGKADSVSILSSLPEDVALKIASLLQVRDLCALGCCSRFWRELCFSDCIWESLVRNRWPLLSSFHFPSSSTHSPNFKKWRKLYLERQVELGLRARSVVKFLEACSRSESLEVGDYLKAVDTLIGTMFGFEDVQRFLFNPQMNVLINLVGLHYCLTTLGIPGDNLVEALRTHEISDRRVCIKWWKVGRWYYGFRMRDESHSRWVSLADLATEDDEHVLGVLRRGTVHEVLRVQISVVGRPSTPWSCQITQRLE*
SoyBase
SoyBase transitions to NEW site on 10/1/2024
