Glyma07g38080 - SoyBase

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Report for Sequence Feature Glyma07g38080

Feature Type:	gene_model
Chromosome:	Gm07
Start:	42947254
stop:	42952113
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma07g38080

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT4G15640	AT	Annotation by Michelle Graham. TAIR10: unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G21465.1); Has 38 Blast hits to 38 proteins in 14 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 38; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). \| chr4:8919245-8921852 REVERSE LENGTH=390	SoyBase	E_val: 9.00E-144	ISS
GO:0001510	GO-bp	Annotation by Michelle Graham. GO Biological Process: RNA methylation	SoyBase	N/A	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0005739	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion	SoyBase	N/A	ISS
GO:0003674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: molecular function	SoyBase	N/A	ISS
UniRef100_C5MTW3	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Adenylyl cyclase n=1 Tax=Nicotiana benthamiana RepID=C5MTW3_NICBE	SoyBase	E_val: 6.00E-142	ISS
UniRef100_I1KN28	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1KN28_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma07g38080

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma07g38080

Paralog	Evidence	Comments
Glyma17g02620	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma07g38080 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.07g251000	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma07g38080

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma07g38080

Limit To All Plant Sequences

>Glyma07g38080.2   sequence type=transcript   gene model=Glyma07g38080   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
CAAAGGTGTAGACTGTTCCACCGAACTGCTCTCTCTCGTTCTCCGCTGTTGTCTCGTAAACCCTGAACCCAAAGGGTCGTTTGTAGCTTCTTCCTCCGTAAGCCTACCGAGTTCGCCACCCGGAACCCACAACTGAGTCGTGACTCGGTTCTTTCACACTGAGCCATGCAAGTTTTCTCTAACGCTCGGCAAGCCTCTCGGCTTCTCCTCTCGCCTCATCTCCGAAGCTCGGAAGCTCCTCACTCCACCGCGCTCTCTCTCTTCTCAGGGCTCACGCAACGTGATTCCCGGCCAGTGAACACTGATCCAATACAATGCTTCTTGTCGAAGGCTTTTTACTCTTCCGGAGTGGGTACCGTTGAAGCAACTCCATCAGAGGATGTGAAGGAATTATACGACAAAATGCTTGACTCTGTAAAAGTTAAACGATCAATGCCTCCAAATGCTTGGTTGTGGTCAATGATTGCAAATTGCAAACACCAGCCCGATATTAGACTTCTCTTCGACATTTTGCAGAACCTCCGCAGATTTAGATTGTCGAATCTTCGAATTCATGACAATTTTAATTGCAATCTCTGTCGAGAAGTTGCTAAGGCATGTGTTCATGCAGGAGCTCTTGATTTTGGAATGAAGGCTTTGTGGAAGCATAATGTCTATGGACTGACTCCAAATATTGCATCTGCTCACCATTTACTGACGAATGCTAAGAACCACAATGATACTAAACTGTTGGTGGAAGTAATGAAGCTTCTGAAGAAGAATGATTTACCATTGCAACCAGGCACAGCAGATATAGTTTTCAGCATTTGTTATAATACAGATGATTGGGAGTTGATTAATAAGTATGCAAAAAGATTTGTCATGGCTGGCGTAAAACTACGACAAACCTCATTGGAAACATGGATGGAATTTGCTGCCAAAAGAGGAGACATTCACTCATTGTGGAAAATAGAAAAGTTGAGATCCAATTCAATGAAGCAGCACACTTTGATAACTGGGTTTTCTTGTGTCAAGGGTCTTCTGTTGGAACGTAAACCCAGTGATGCAGTTGCTGTCATTCAAGTTCTAAATCAGACCTTGTCTGATACAAAGAAGTCAGGCATCAAGGGTGAACTTCAGAAGCTTGTATCTGAGTGGCCTTTGGAAGTTATTAAGCACCAAAAAGAAGAGGACAGAAAGGCATTAGCAGCCTCTTTGAAATCTGATATCCTTGTCATGGTTAGTGAGCTACTGAGCATGGGTCTTGAGGCAAATGTAAGTTTGGAAGACCTGGACAGAAAGGAAGATATTCCACAATAGCATGGAACTCAGAATTTGATGACATTGTGTTTCAGAATGTGCTTGTTTGTGGAGTATCTACTTACCAGGATGCTTCCTAGCCCTGGTTAGATACTGAGTCTGCGAACATAGCAAACGTTGATTACTAAATTAAAATTATTATTTTGCTTCACTTTTTACCATTTCTTATTTTCCGTACAACAAGTGGTTACGGTTTTGGTTGCATAGTAGTGGTATATCAGTAGATTATGTTGGAACAAAAATAATCTGGCATATGTCCTCTACTCTGAACTGCAAGAAATTGCTTTCACAAGTGAGAGATACAATCATGGCTTTTTAATCTCTAGTTCTAGTTCAAGTTCAAGTGGACCCTACCACAAAGGAATGCTAAGGCCTAAGAGTTGCAATTTGTGTCATCTGGTGTAACATTGAATTGTTCTACTTGAAGTCTTGAAAGAAAGTGTTTTATATTCACGGATTGTCGGCAATATGGGTTAACTTGTTTATTTAAATGCAAAATGAATGTGTGCGTAG

Coding sequences of Glyma07g38080

Limit To All Plant Sequences

>Glyma07g38080.1   sequence type=CDS   gene model=Glyma07g38080   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCAAGTTTTCTCTAACGCTCGGCAAGCCTCTCGGCTTCTCCTCTCGCCTCATCTCCGAAGCTCGGAAGCTCCTCACTCCACCGCGCTCTCTCTCTTCTCAGGGCTCACGCAACGTGATTCCCGGCCAGTGAACACTGATCCAATACAATGCTTCTTGTCGAAGGCTTTTTACTCTTCCGGAGTGGGTACCGTTGAAGCAACTCCATCAGAGGATGTGAAGGAATTATACGACAAAATGCTTGACTCTGTAAAAGTTAAACGATCAATGCCTCCAAATGCTTGGTTGTGGTCAATGATTGCAAATTGCAAACACCAGCCCGATATTAGACTTCTCTTCGACATTTTGCAGAACCTCCGCAGATTTGTTAGTTTCTATTCATTCTCTTTCTGTTGCAAACTATTGTTGTTGTTGCTGTTTATGGTGATGATTTTTAACCTATTTTGTAAGCAGAGATTGTCGAATCTTCGAATTCATGACAATTTTAATTGCAATCTCTGTCGAGAAGTTGCTAAGGCATGTGTTCATGCAGGAGCTCTTGATTTTGGAATGAAGGCTTTGTGGAAGCATAATGTCTATGGACTGACTCCAAATATTGCATCTGCTCACCATTTACTGACGAATGCTAAGAACCACAATGATACTAAACTGTTGGTGGAAGTAATGAAGCTTCTGAAGAAGAATGATTTACCATTGCAACCAGGCACAGCAGATATAGTTTTCAGCATTTGTTATAATACAGATGATTGGGAGTTGATTAATAAGTATGCAAAAAGATTTGTCATGGCTGGCGTAAAACTACGACAAACCTCATTGGAAACATGGATGGAATTTGCTGCCAAAAGAGGAGACATTCACTCATTGTGGAAAATAGAAAAGTTGAGATCCAATTCAATGAAGCAGCACACTTTGATAACTGGGTTTTCTTGTGTCAAGGGTCTTCTGTTGGAACGTAAACCCAGTGATGCAGTTGCTGTCATTCAAGTTCTAAATCAGACCTTGTCTGATACAAAGAAGTCAGGCATCAAGGGTGAACTTCAGAAGCTTGTATCTGAGTGGCCTTTGGAAGTTATTAAGCACCAAAAAGAAGAGGACAGAAAGGCATTAGCAGCCTCTTTGAAATCTGATATCCTTGTCATGGTTAGTGAGCTACTGAGCATGGGTCTTGAGGCAAATGTAAGTTTGGAAGACCTGGACAGAAAGGAAGATATTCCACAATAG

>Glyma07g38080.2   sequence type=CDS   gene model=Glyma07g38080   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCAAGTTTTCTCTAACGCTCGGCAAGCCTCTCGGCTTCTCCTCTCGCCTCATCTCCGAAGCTCGGAAGCTCCTCACTCCACCGCGCTCTCTCTCTTCTCAGGGCTCACGCAACGTGATTCCCGGCCAGTGAACACTGATCCAATACAATGCTTCTTGTCGAAGGCTTTTTACTCTTCCGGAGTGGGTACCGTTGAAGCAACTCCATCAGAGGATGTGAAGGAATTATACGACAAAATGCTTGACTCTGTAAAAGTTAAACGATCAATGCCTCCAAATGCTTGGTTGTGGTCAATGATTGCAAATTGCAAACACCAGCCCGATATTAGACTTCTCTTCGACATTTTGCAGAACCTCCGCAGATTTAGATTGTCGAATCTTCGAATTCATGACAATTTTAATTGCAATCTCTGTCGAGAAGTTGCTAAGGCATGTGTTCATGCAGGAGCTCTTGATTTTGGAATGAAGGCTTTGTGGAAGCATAATGTCTATGGACTGACTCCAAATATTGCATCTGCTCACCATTTACTGACGAATGCTAAGAACCACAATGATACTAAACTGTTGGTGGAAGTAATGAAGCTTCTGAAGAAGAATGATTTACCATTGCAACCAGGCACAGCAGATATAGTTTTCAGCATTTGTTATAATACAGATGATTGGGAGTTGATTAATAAGTATGCAAAAAGATTTGTCATGGCTGGCGTAAAACTACGACAAACCTCATTGGAAACATGGATGGAATTTGCTGCCAAAAGAGGAGACATTCACTCATTGTGGAAAATAGAAAAGTTGAGATCCAATTCAATGAAGCAGCACACTTTGATAACTGGGTTTTCTTGTGTCAAGGGTCTTCTGTTGGAACGTAAACCCAGTGATGCAGTTGCTGTCATTCAAGTTCTAAATCAGACCTTGTCTGATACAAAGAAGTCAGGCATCAAGGGTGAACTTCAGAAGCTTGTATCTGAGTGGCCTTTGGAAGTTATTAAGCACCAAAAAGAAGAGGACAGAAAGGCATTAGCAGCCTCTTTGAAATCTGATATCCTTGTCATGGTTAGTGAGCTACTGAGCATGGGTCTTGAGGCAAATGTAAGTTTGGAAGACCTGGACAGAAAGGAAGATATTCCACAATAG

Predicted protein sequences of Glyma07g38080

Limit To All Plant Sequences

>Glyma07g38080.1   sequence type=predicted peptide   gene model=Glyma07g38080   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MQVFSNARQASRLLLSPHLRSSEAPHSTALSLFSGLTQRDSRPVNTDPIQCFLSKAFYSSGVGTVEATPSEDVKELYDKMLDSVKVKRSMPPNAWLWSMIANCKHQPDIRLLFDILQNLRRFVSFYSFSFCCKLLLLLLFMVMIFNLFCKQRLSNLRIHDNFNCNLCREVAKACVHAGALDFGMKALWKHNVYGLTPNIASAHHLLTNAKNHNDTKLLVEVMKLLKKNDLPLQPGTADIVFSICYNTDDWELINKYAKRFVMAGVKLRQTSLETWMEFAAKRGDIHSLWKIEKLRSNSMKQHTLITGFSCVKGLLLERKPSDAVAVIQVLNQTLSDTKKSGIKGELQKLVSEWPLEVIKHQKEEDRKALAASLKSDILVMVSELLSMGLEANVSLEDLDRKEDIPQ*

>Glyma07g38080.2   sequence type=predicted peptide   gene model=Glyma07g38080   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MQVFSNARQASRLLLSPHLRSSEAPHSTALSLFSGLTQRDSRPVNTDPIQCFLSKAFYSSGVGTVEATPSEDVKELYDKMLDSVKVKRSMPPNAWLWSMIANCKHQPDIRLLFDILQNLRRFRLSNLRIHDNFNCNLCREVAKACVHAGALDFGMKALWKHNVYGLTPNIASAHHLLTNAKNHNDTKLLVEVMKLLKKNDLPLQPGTADIVFSICYNTDDWELINKYAKRFVMAGVKLRQTSLETWMEFAAKRGDIHSLWKIEKLRSNSMKQHTLITGFSCVKGLLLERKPSDAVAVIQVLNQTLSDTKKSGIKGELQKLVSEWPLEVIKHQKEEDRKALAASLKSDILVMVSELLSMGLEANVSLEDLDRKEDIPQ*

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