Glyma07g38070 - SoyBase

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Report for Sequence Feature Glyma07g38070

Feature Type:	gene_model
Chromosome:	Gm07
Start:	42941367
stop:	42945012
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma07g38070

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G18650	AT	Annotation by Michelle Graham. TAIR10: CHY-type/CTCHY-type/RING-type Zinc finger protein \| chr5:6218260-6220374 FORWARD LENGTH=267	SoyBase	E_val: 2.00E-171	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0008270	GO-mf	Annotation by Michelle Graham. GO Molecular Function: zinc ion binding	SoyBase	N/A	ISS
KOG1940	KOG	Zn-finger protein	JGI		ISS
KOG4172	KOG	Predicted E3 ubiquitin ligase	JGI		ISS
PTHR21319	Panther	RING FINGER AND CHY ZINC FINGER DOMAIN CONTAINING 1	JGI		ISS
PF00097	PFAM	Zinc finger, C3HC4 type (RING finger)	JGI		ISS
PF05495	PFAM	CHY zinc finger	JGI		ISS
UniRef100_C6TLW1	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=C6TLW1_SOYBN	SoyBase	E_val: 0	ISS
UniRef100_G7ISH8	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: RING finger and CHY zinc finger domain-containing protein n=1 Tax=Medicago truncatula RepID=G7ISH8_MEDTR	SoyBase	E_val: 1.00E-173	ISS

Expression Patterns of Glyma07g38070

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma07g38070

Paralog	Evidence	Comments
Glyma17g02630	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma07g38070 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.07g250900	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma07g38070

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma07g38070

Limit To All Plant Sequences

>Glyma07g38070.2   sequence type=transcript   gene model=Glyma07g38070   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
CTTGAAGTTAAATGAGTAAGAAATTAGAATGTGTGTGAAATAGAGAGACTTGGAAGGATTTGTTTGTGATGATTGGGTTGAATCCAATTGGGCGATCCTACGGCAATATTCTTTTCTCTCCTGCTCAAGTCACTGCGCCTTATCTCATCCCAAGTGGTCATTCTCTATTACTGCTGTCTGCTTAAGATATTTTTATATTGCATTAAAAAAAGAGGGTAAGAGAGAGTGTGGTCCTTTTAAGTCTTTCTCTTTTTGGGATCACGCCACATATCTTCCCAAATCAGGAAACTCTTTCTCTTCTTCCGTTTCCTAGTCTCACACCCAAACCTCATGGAAGGCTCTGTCAACGAACGTCTTGATTTTGGGAAGATGGGATATGGGTGCAATCATTACCGGAGAAGATGCAGGATTCGTGCTCCCTGCTGCAACGAGATCTACTCATGCCGTCACTGTCATAACGACGCTGCGAGCTTGTTGAAGAATCCCTTTGATCGCCACGAGCTCGTTCGCCAAGATGTTAAACAAGTTGTTTGTTCAGTTTGTGACACTGAGCAACCTGTTGCTCAAGTTTGCACAAACTGTGGCGTCAAAATGGGAGAATACTTCTGCAACATCTGCAAATTCTTCGATGATGATGTTGAGAAAGAACAATTTCACTGTGATGATTGTGGGATCTGCAGGATCTTGTTATGCAATTGGTCTGCGTGATAATCATTTGTGTGTGGAGAACTCCATGCGGCATCACTGTCCCATTTGTTACGAGTACCTTTTTGATTCATTGAAAGACACCATTGTTATGAAATGTGGTCACACAATGCACCATGAATGTTACGTAGAGATGATAAAAAATGACAAATATTGTTGTCCCATATGCTCCAAGTCAGTGATTGACATGTCTAAGACGTGGAAGAGAATTGATGAAGAGATTGAAGCAACTGTCATGCCTGAAGATTATCGAAACAGGAAGGTTTGGATACTATGTAATGACTGCAATGACACAACAGAAGTTTACTTCCACATTCTTGGCCAAAAATGTGGTCACTGCAGATCATATAATACTCGTGCAGTTGCGCCTCCAGTTCTTCCCCAATGACCAGATTCTTGGGTTCAAGAAGGGAAAACTGTCAGCAGAAAATTAAAGTTAGCACCCTGTTATTATTATAGAGGGCTATTGAATTAATTGAGCATCAAAAGTGATTGGTGTATTGTGTCCTAGATAGTTTTCTTAGGTTATTCTTCCTCCAACATATGGAGTGGGATTGTTGTCTCTTGGTTATTGGGCTGGTATGAACATCTTTATACTGTAACAGAGGGAAAACATTTTTCCCGGTCATGAATTGCTGGTAATAGTGATGTATTTGATACTGGGTGATTGATTGCATTGTCAGCCATTGTGGTTCTCTATAATTTGGTCGGGATTATTTGATCCTTGTAGTTTTTCTCGCACATTGGAATAAACTGTGATCGTTAGTTTTGATCATTCTATTCCCAGCCATTATTTTACAAAAGTGGAAATAGTCATCTTTTTGTGGTTAAATTGACCATTCCCTACAGAGTTGAATGAATTGAAACTTATTATTTTTTAATGAATT

Coding sequences of Glyma07g38070

Limit To All Plant Sequences

>Glyma07g38070.1   sequence type=CDS   gene model=Glyma07g38070   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAAGGCTCTGTCAACGAACGTCTTGATTTTGGGAAGATGGGATATGGGTGCAATCATTACCGGAGAAGATGCAGGATTCGTGCTCCCTGCTGCAACGAGATCTACTCATGCCGTCACTGTCATAACGACGCTGCGAGCTTGTTGAAGAATCCCTTTGATCGCCACGAGCTCGTTCGCCAAGATGTTAAACAAGTTGTTTGTTCAGTTTGTGACACTGAGCAACCTGTTGCTCAAGTTTGCACAAACTGTGGCGTCAAAATGGGAGAATACTTCTGCAACATCTGCAAATTCTTCGATGATGATGTTGAGAAAGAACAATTTCACTGTGATGATTGTGGGATCTGCAGGGTTGGTGGTCGAGATAATTTTTTCCACTGCAAGAAGTGTGGATCTTGTTATGCAATTGGTCTGCGTGATAATCATTTGTGTGTGGAGAACTCCATGCGGCATCACTGTCCCATTTGTTACGAGTACCTTTTTGATTCATTGAAAGACACCATTGTTATGAAATGTGGTCACACAATGCACCATGAATGTTACGTAGAGATGATAAAAAATGACAAATATTGTTGTCCCATATGCTCCAAGTCAGTGATTGACATGTCTAAGACGTGGAAGAGAATTGATGAAGAGATTGAAGCAACTGTCATGCCTGAAGATTATCGAAACAGGAAGGTTTGGATACTATGTAATGACTGCAATGACACAACAGAAGTTTACTTCCACATTCTTGGCCAAAAATGTGGTCACTGCAGATCATATAATACTCGTGCAGTTGCGCCTCCAGTTCTTCCCCAATGA

>Glyma07g38070.2   sequence type=CDS   gene model=Glyma07g38070   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTTAAACAAGTTGTTTGTTCAGTTTGTGACACTGAGCAACCTGTTGCTCAAGTTTGCACAAACTGTGGCGTCAAAATGGGAGAATACTTCTGCAACATCTGCAAATTCTTCGATGATGATGTTGAGAAAGAACAATTTCACTGTGATGATTGTGGGATCTGCAGGATCTTGTTATGCAATTGGTCTGCGTGATAATCATTTGTGTGTGGAGAACTCCATGCGGCATCACTGTCCCATTTGTTACGAGTACCTTTTTGATTCATTGAAAGACACCATTGTTATGAAATGTGGTCACACAATGCACCATGAATGTTACGTAGAGATGATAAAAAATGACAAATATTGTTGTCCCATATGCTCCAAGTCAGTGATTGACATGTCTAAGACGTGGAAGAGAATTGATGAAGAGATTGAAGCAACTGTCATGCCTGAAGATTATCGAAACAGGAAGGTTTGGATACTATGTAATGACTGCAATGACACAACAGAAGTTTACTTCCACATTCTTGGCCAAAAATGTGGTCACTGCAGATCATATAATACTCGTGCAGTTGCGCCTCCAGTTCTTCCCCAATGA

Predicted protein sequences of Glyma07g38070

Limit To All Plant Sequences

>Glyma07g38070.1   sequence type=predicted peptide   gene model=Glyma07g38070   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MEGSVNERLDFGKMGYGCNHYRRRCRIRAPCCNEIYSCRHCHNDAASLLKNPFDRHELVRQDVKQVVCSVCDTEQPVAQVCTNCGVKMGEYFCNICKFFDDDVEKEQFHCDDCGICRVGGRDNFFHCKKCGSCYAIGLRDNHLCVENSMRHHCPICYEYLFDSLKDTIVMKCGHTMHHECYVEMIKNDKYCCPICSKSVIDMSKTWKRIDEEIEATVMPEDYRNRKVWILCNDCNDTTEVYFHILGQKCGHCRSYNTRAVAPPVLPQ*

>Glyma07g38070.2   sequence type=predicted peptide   gene model=Glyma07g38070   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MLNKLFVQFVTLSNLLLKFAQTVASKWENTSATSANSSMMMLRKNNFTVMIVGSAGSCYAIGLRDNHLCVENSMRHHCPICYEYLFDSLKDTIVMKCGHTMHHECYVEMIKNDKYCCPICSKSVIDMSKTWKRIDEEIEATVMPEDYRNRKVWILCNDCNDTTEVYFHILGQKCGHCRSYNTRAVAPPVLPQ*

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