Glyma07g38020 - SoyBase

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Report for Sequence Feature Glyma07g38020

Feature Type:	gene_model
Chromosome:	Gm07
Start:	42895002
stop:	42902051
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma07g38020

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G18590	AT	Annotation by Michelle Graham. TAIR10: Galactose oxidase/kelch repeat superfamily protein \| chr5:6178516-6182186 REVERSE LENGTH=708	SoyBase	E_val: 0	ISS
GO:0006869	GO-bp	Annotation by Michelle Graham. GO Biological Process: lipid transport	SoyBase	N/A	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0005829	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytosol	SoyBase	N/A	ISS
KOG0379	KOG	Kelch repeat-containing proteins	JGI		ISS
PTHR23244	Panther	KELCH REPEAT DOMAIN	JGI		ISS
PTHR23244:SF29	Panther	RANGAP1-INTERACTING PROTEIN-RELATED	JGI		ISS
PF01344	PFAM	Kelch motif	JGI		ISS
PF07646	PFAM	Kelch motif	JGI		ISS
UniRef100_G7JJ54	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Acyl-CoA-binding domain-containing protein n=1 Tax=Medicago truncatula RepID=G7JJ54_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_I1KN21	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1KN21_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma07g38020

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma07g38020

Paralog	Evidence	Comments
Glyma17g02680	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma07g38020 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.07g250400	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma07g38020

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma07g38020

Limit To All Plant Sequences

>Glyma07g38020.2   sequence type=transcript   gene model=Glyma07g38020   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
GTAATATCCAACAAAATCCTTCATATGCGGACCTGACACTGTGCTAACGTGCGCATCCTCTCTCTGTCTGTCTCTATGTTCTGTCATCTCATCTTAACTTTGCTTCTTCACTTCCTTCCAGCTAATGCCTAATTAACTTGCTTCTTTCTTTCTTCCTTCTTCATTCAGCACACTTACATATCCTAATCCGACGTCGTTTTTCAAACTCACACCATAGCTGTGTAGTGCAGGGCAGGGTTACCTTTTCCTTTTCCACTTTTGCTCTCTTTCTTTCTGGGCACAGCAAAGAAACTAACTCTTTCAGGACTCAGGCTGGCTCATGTCATAATGTGCCTTCCCTTTCTGGCCTTTTAGGGTTTTTACTTCTCCATCTCTCTCCATTTTTTTCTTCTTCCTTCCTGCTGCTGCTGGCATTTACCTTTCATCAACATGTTTGGCATTTCTCGTCGCCGTATGAAACTTGGCAGATTGAAGGTGCAGCTTTCTGAGGCCAATCCGGGAACCAGAACTCCCATCAGACACCCCAAACGGAACGGAAACTCCAATGGAGAAGGAGAGGGAGATGCTGGAGGTTCAAGTGGCCATTCTGATGAAGTTGATTGCCAGCCTTCAACTGAGATAACTAGTGGCAGCTCAGAGAACTGGATGGTCTTGTCTATTGCTGGGGATAAACCTACTCCTAGATCGAATCATGCAGCAGCTGTCATTGGGAATAAGATGATAGTGGTGGGCGGTGAATCTGGGACTGGATTGTTGGATGACGTGCAGGTGCTGACTTTTGATAGATTTTCGTGGACCATGGCATCGTCAAAGCTTTACTTGTCACCCAGCAGTCTGCCACTGAAAATTCCAGCATGCAAGGGCCATAGTTTGGTATCCTGGGGGAAAAAAGCACTGCTCATTGGAGGGAAAACGGACCCAGGAAGTGACAGAATTTCAGTATGGGCATTTGATACAGAGACAGAGTGCTGGTCACTCATGGAGGCAAAGGGGGACATACCGGTTGCTCGCAGTGGTCATAGTGTTGTTAGAGCGAGCTCTGTTTTAATATTGTTTGGTGGTGAGGATGCAAAAAGGAGGAAATTGAATGATCTACATATGTTCGATCTCAAGTCCTTAACATGGCTTCCACTTCACTACACGGGAACAGCACCTTCTCCAAGATTCAACCATGTAGCTGCTCTTTATGATGATAAAATTCTTTATATATTTGGAGGATCATCAAAATCCAGGACCTTAAATGATTTATATTCACTTGACTTTGAAACTATGGCATGGTCACGAGTAAAGATACGAGGTTTTCATCCATCACCTAGAGCTGGTTGTTGTGACGTCCTTTGTGGTACTAAATGGTATATCACTGGGGGTGGAAGCCGGAAAAAAAGACACGGAGAGACTGTGATATTTGATATTGTAAAAAATGAATGGTCTGTGGCAATTACTTCGCCTCCGTCTTCTATCACTACAAACAAGGGTTTCAGCATGGTACTTGTGCAGCACAAGGAAAAAGATTTTCTTGTTGCATTTGGGGGATCCAAAAAAGAACCATCAAATCAGGTGGAGGTGTTGATAATGGAAAAGAATGAATCAACATTGGGGAGCCAATCAGCTCACAGTAAATGTTCAGCATCAGTACTACTTGAAAAACATTCATCATCTACTAGATTGGCCCCCCAACTTAATGATTGTTCTCAACATTTAGTTGACTCAGTTGCTAGACAAAATCTAGCTTCTGCAATTGAACATGGTTCCGGCAGGAGATCTCTGTCAGAATCCCTGGTTATTGATCCCAATTTCCCCCCCACCAACACCTCCCTTCGTAAGCAATTTGATCACGATGAAGAATACAATACCGATCTCAAGATGGACAAGAACTCAGATGAACGTTCTTTTCCTCGGGCCGTAGATCACAGAACGAACAAAGATTACCATGGTAAACAGATGAATACTAGTGAAGTCAAGACCAATATGGAGGAACAACAAACATTGTTATCTGGAATTCTAAACCAACAAAACCTAGTATTTGAAAATGACATGCCAGAAAGTGATAATTTGTTATTCAGTGAAAACATTAACATTAACATTAATTCAGGATCACTGACTACTTCAAATGTCTATTATTACTATGAAAGTAAATTGGCTTCTCTAATAAGGAAGAATGGAATTTTGGAGGGACAATTAGCAGCTTCCATAGCGAGCAAAGAAGCGGCAGAGAAAAGCTTGACTTCTGTTCTTAAAAGTAGGCAGGAAATGGATAGGAAATTGACAGAATCAGAGAAGGAGATGGAATTGATGAGAGAGAAGCTGGCTGGTCTAGAGTTGGCCCAGGAAGAGACCAACAACCTATCAAACATTGTGCATTCTGACAATGTACGGCTAGAGCATGATGTTGCCTTCCTCAAGGCTGTTTTAGATGATACACAAAAGGAGTTGCACTCGACAAGAGGAGTTATTGCAGGAGAAAGAGCAAGGGCATTCCAACTTCAGTTTGAAGTTTTTCATCTCAAACAAAGATTGCAGTCAATGGAAAAAAATCGAGCATCTACTACTCCGAGGAAACCATTTCATGTACAGTGAAGTGGATGTTTGAACTTTGAAGTAGCTTATTCCAGTTTTTTTTTTATGTTTTTAGAGAAGCATATTCCACTTAAGAATTTGATGTGTACATATATTTGAACCACAGTGAATAACCAACTTTTTCTCTTCACTGTCACAAGAAGCACTCTGGGTAAATATATATGCTATAAGGGAATTAATTCTGAGTTTCAAGTCTGGTAT

Coding sequences of Glyma07g38020

Limit To All Plant Sequences

>Glyma07g38020.1   sequence type=CDS   gene model=Glyma07g38020   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTTTGGCATTTCTCGTCGCCGTATGAAACTTGGCAGATTGAAGGTGCAGCTTTCTGAGGCCAATCCGGGAACCAGAACTCCCATCAGACACCCCAAACGGAACGGAAACTCCAATGGAGAAGGAGAGGGAGATGCTGGAGGTTCAAGTGGCCATTCTGATGAAGTTGATTGCCAGCCTTCAACTGAGATAACTAGTGGCAGCTCAGAGAACTGGATGGTCTTGTCTATTGCTGGGGATAAACCTACTCCTAGATCGAATCATGCAGCAGCTGTCATTGGGAATAAGATGATAGTGGTGGGCGGTGAATCTGGGACTGGATTGTTGGATGACGTGCAGGTGCTGACTTTTGATAGATTTTCGTGGACCATGGCATCGTCAAAGCTTTACTTGTCACCCAGCAGTCTGCCACTGAAAATTCCAGCATGCAAGGGCCATAGTTTGGTATCCTGGGGGAAAAAAGCACTGCTCATTGGAGGGAAAACGGACCCAGGAAGTGACAGAATTTCAGTATGGGCATTTGATACAGAGACAGAGTGCTGGTCACTCATGGAGGCAAAGGGGGACATACCGGTTGCTCGCAGTGGTCATAGTGTTGTTAGAGCGAGCTCTGTTTTAATATTGTTTGGTGGTGAGGATGCAAAAAGGAGGAAATTGAATGATCTACATATGTTCGATCTCAAGTCCTTAACATGGCTTCCACTTCACTACACGGGAACAGCACCTTCTCCAAGATTCAACCATGTAGCTGCTCTTTATGATGATAAAATTCTTTATATATTTGGAGGATCATCAAAATCCAGGACCTTAAATGATTTATATTCACTTGACTTTGAAACTATGGCATGGTCACGAGTAAAGATACGAGGTTTTCATCCATCACCTAGAGCTGGTTGTTGTGACGTCCTTTGTGGTACTAAATGGTATATCACTGGGGGTGGAAGCCGGAAAAAAAGACACGGAGAGACTGTGATATTTGATATTGTAAAAAATGAATGGTCTGTGGCAATTACTTCGCCTCCGTCTTCTATCACTACAAACAAGGGTTTCAGCATGGTACTTGTGCAGCACAAGGAAAAAGATTTTCTTGTTGCATTTGGGGGATCCAAAAAAGAACCATCAAATCAGGTGGAGGTGTTGATAATGGAAAAGAATGAATCAACATTGGGGAGCCAATCAGCTCACAGTAAATGTTCAGCATCAGTACTACTTGAAAAACATTCATCATCTACTAGATTGGCCCCCCAACTTAATGATTGTTCTCAACATTTAGTTGACTCAGTTGCTAGACAAAATCTAGCTTCTGCAATTGAACATGGTTCCGGCAGGAGATCTCTGTCAGAATCCCTGGTTATTGATCCCAATTTCCCCCCCACCAACACCTCCCTTCGTAAGCAATTTGATCACGATGAAGAATACAATACCGATCTCAAGATGGACAAGAACTCAGATGAACGTTCTTTTCCTCGGGCCGTAGATCACAGAACGAACAAAGATTACCATGGTAAACAGATGAATACTAGTGAAGTCAAGACCAATATGGAGGAACAACAAACATTGTTATCTGGAATTCTAAACCAACAAAACCTAGTATTTGAAAATGACATGCCAGAAAGTGATAATTTGTTATTCAGTGAAAACATTAACATTAACATTAATTCAGGATCACTGACTACTTCAAATGTCTATTATTACTATGAAAGTAAATTGGCTTCTCTAATAAGGAAGAATGGAATTTTGGAGGGACAATTAGCAGCTTCCATAGCGAGCAAAGAAGCGGCAGAGAAAAGCTTGACTTCTGTTCTTAAAAGTAGGCAGGAAATGGATAGGAAATTGACAGAATCAGAGAAGGAGATGGAATTGATGAGAGAGAAGCTGGCTGGTCTAGAGTTGGCCCAGGAAGAGACCAACAACCTATCAAACATTGTGCATTCTGACAATGTACGGCTAGAGCATGATGTTGCCTTCCTCAAGGCTGTTTTAGATGATACACAAAAGGAGTTGCACTCGACAAGAGGAGTTATTGCAGGAGAAAGAGCAAGGGCATTCCAACTTCAGATCGTTGGATTTTGTCATACTTTGGGTGTTGTACAGTTTGAAGTTTTTCATCTCAAACAAAGATTGCAGTCAATGGAAAAAAATCGAGCATCTACTACTCCGAGGAAACCATTTCATGTACAGTGA

>Glyma07g38020.2   sequence type=CDS   gene model=Glyma07g38020   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTTTGGCATTTCTCGTCGCCGTATGAAACTTGGCAGATTGAAGGTGCAGCTTTCTGAGGCCAATCCGGGAACCAGAACTCCCATCAGACACCCCAAACGGAACGGAAACTCCAATGGAGAAGGAGAGGGAGATGCTGGAGGTTCAAGTGGCCATTCTGATGAAGTTGATTGCCAGCCTTCAACTGAGATAACTAGTGGCAGCTCAGAGAACTGGATGGTCTTGTCTATTGCTGGGGATAAACCTACTCCTAGATCGAATCATGCAGCAGCTGTCATTGGGAATAAGATGATAGTGGTGGGCGGTGAATCTGGGACTGGATTGTTGGATGACGTGCAGGTGCTGACTTTTGATAGATTTTCGTGGACCATGGCATCGTCAAAGCTTTACTTGTCACCCAGCAGTCTGCCACTGAAAATTCCAGCATGCAAGGGCCATAGTTTGGTATCCTGGGGGAAAAAAGCACTGCTCATTGGAGGGAAAACGGACCCAGGAAGTGACAGAATTTCAGTATGGGCATTTGATACAGAGACAGAGTGCTGGTCACTCATGGAGGCAAAGGGGGACATACCGGTTGCTCGCAGTGGTCATAGTGTTGTTAGAGCGAGCTCTGTTTTAATATTGTTTGGTGGTGAGGATGCAAAAAGGAGGAAATTGAATGATCTACATATGTTCGATCTCAAGTCCTTAACATGGCTTCCACTTCACTACACGGGAACAGCACCTTCTCCAAGATTCAACCATGTAGCTGCTCTTTATGATGATAAAATTCTTTATATATTTGGAGGATCATCAAAATCCAGGACCTTAAATGATTTATATTCACTTGACTTTGAAACTATGGCATGGTCACGAGTAAAGATACGAGGTTTTCATCCATCACCTAGAGCTGGTTGTTGTGACGTCCTTTGTGGTACTAAATGGTATATCACTGGGGGTGGAAGCCGGAAAAAAAGACACGGAGAGACTGTGATATTTGATATTGTAAAAAATGAATGGTCTGTGGCAATTACTTCGCCTCCGTCTTCTATCACTACAAACAAGGGTTTCAGCATGGTACTTGTGCAGCACAAGGAAAAAGATTTTCTTGTTGCATTTGGGGGATCCAAAAAAGAACCATCAAATCAGGTGGAGGTGTTGATAATGGAAAAGAATGAATCAACATTGGGGAGCCAATCAGCTCACAGTAAATGTTCAGCATCAGTACTACTTGAAAAACATTCATCATCTACTAGATTGGCCCCCCAACTTAATGATTGTTCTCAACATTTAGTTGACTCAGTTGCTAGACAAAATCTAGCTTCTGCAATTGAACATGGTTCCGGCAGGAGATCTCTGTCAGAATCCCTGGTTATTGATCCCAATTTCCCCCCCACCAACACCTCCCTTCGTAAGCAATTTGATCACGATGAAGAATACAATACCGATCTCAAGATGGACAAGAACTCAGATGAACGTTCTTTTCCTCGGGCCGTAGATCACAGAACGAACAAAGATTACCATGGTAAACAGATGAATACTAGTGAAGTCAAGACCAATATGGAGGAACAACAAACATTGTTATCTGGAATTCTAAACCAACAAAACCTAGTATTTGAAAATGACATGCCAGAAAGTGATAATTTGTTATTCAGTGAAAACATTAACATTAACATTAATTCAGGATCACTGACTACTTCAAATGTCTATTATTACTATGAAAGTAAATTGGCTTCTCTAATAAGGAAGAATGGAATTTTGGAGGGACAATTAGCAGCTTCCATAGCGAGCAAAGAAGCGGCAGAGAAAAGCTTGACTTCTGTTCTTAAAAGTAGGCAGGAAATGGATAGGAAATTGACAGAATCAGAGAAGGAGATGGAATTGATGAGAGAGAAGCTGGCTGGTCTAGAGTTGGCCCAGGAAGAGACCAACAACCTATCAAACATTGTGCATTCTGACAATGTACGGCTAGAGCATGATGTTGCCTTCCTCAAGGCTGTTTTAGATGATACACAAAAGGAGTTGCACTCGACAAGAGGAGTTATTGCAGGAGAAAGAGCAAGGGCATTCCAACTTCAGTTTGAAGTTTTTCATCTCAAACAAAGATTGCAGTCAATGGAAAAAAATCGAGCATCTACTACTCCGAGGAAACCATTTCATGTACAGTGA

Predicted protein sequences of Glyma07g38020

Limit To All Plant Sequences

>Glyma07g38020.1   sequence type=predicted peptide   gene model=Glyma07g38020   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MFGISRRRMKLGRLKVQLSEANPGTRTPIRHPKRNGNSNGEGEGDAGGSSGHSDEVDCQPSTEITSGSSENWMVLSIAGDKPTPRSNHAAAVIGNKMIVVGGESGTGLLDDVQVLTFDRFSWTMASSKLYLSPSSLPLKIPACKGHSLVSWGKKALLIGGKTDPGSDRISVWAFDTETECWSLMEAKGDIPVARSGHSVVRASSVLILFGGEDAKRRKLNDLHMFDLKSLTWLPLHYTGTAPSPRFNHVAALYDDKILYIFGGSSKSRTLNDLYSLDFETMAWSRVKIRGFHPSPRAGCCDVLCGTKWYITGGGSRKKRHGETVIFDIVKNEWSVAITSPPSSITTNKGFSMVLVQHKEKDFLVAFGGSKKEPSNQVEVLIMEKNESTLGSQSAHSKCSASVLLEKHSSSTRLAPQLNDCSQHLVDSVARQNLASAIEHGSGRRSLSESLVIDPNFPPTNTSLRKQFDHDEEYNTDLKMDKNSDERSFPRAVDHRTNKDYHGKQMNTSEVKTNMEEQQTLLSGILNQQNLVFENDMPESDNLLFSENINININSGSLTTSNVYYYYESKLASLIRKNGILEGQLAASIASKEAAEKSLTSVLKSRQEMDRKLTESEKEMELMREKLAGLELAQEETNNLSNIVHSDNVRLEHDVAFLKAVLDDTQKELHSTRGVIAGERARAFQLQIVGFCHTLGVVQFEVFHLKQRLQSMEKNRASTTPRKPFHVQ*

>Glyma07g38020.2   sequence type=predicted peptide   gene model=Glyma07g38020   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MFGISRRRMKLGRLKVQLSEANPGTRTPIRHPKRNGNSNGEGEGDAGGSSGHSDEVDCQPSTEITSGSSENWMVLSIAGDKPTPRSNHAAAVIGNKMIVVGGESGTGLLDDVQVLTFDRFSWTMASSKLYLSPSSLPLKIPACKGHSLVSWGKKALLIGGKTDPGSDRISVWAFDTETECWSLMEAKGDIPVARSGHSVVRASSVLILFGGEDAKRRKLNDLHMFDLKSLTWLPLHYTGTAPSPRFNHVAALYDDKILYIFGGSSKSRTLNDLYSLDFETMAWSRVKIRGFHPSPRAGCCDVLCGTKWYITGGGSRKKRHGETVIFDIVKNEWSVAITSPPSSITTNKGFSMVLVQHKEKDFLVAFGGSKKEPSNQVEVLIMEKNESTLGSQSAHSKCSASVLLEKHSSSTRLAPQLNDCSQHLVDSVARQNLASAIEHGSGRRSLSESLVIDPNFPPTNTSLRKQFDHDEEYNTDLKMDKNSDERSFPRAVDHRTNKDYHGKQMNTSEVKTNMEEQQTLLSGILNQQNLVFENDMPESDNLLFSENINININSGSLTTSNVYYYYESKLASLIRKNGILEGQLAASIASKEAAEKSLTSVLKSRQEMDRKLTESEKEMELMREKLAGLELAQEETNNLSNIVHSDNVRLEHDVAFLKAVLDDTQKELHSTRGVIAGERARAFQLQFEVFHLKQRLQSMEKNRASTTPRKPFHVQ*

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