Glyma07g37990 - SoyBase

SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research

Report for Sequence Feature Glyma07g37990

Feature Type:	gene_model
Chromosome:	Gm07
Start:	42870489
stop:	42871529
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma07g37990

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G18560	AT	Annotation by Michelle Graham. TAIR10: Integrase-type DNA-binding superfamily protein \| chr5:6164859-6165905 REVERSE LENGTH=348	SoyBase	E_val: 5.00E-59	ISS
GO:0006355	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of transcription, DNA-dependent	SoyBase	N/A	ISS
GO:0009908	GO-bp	Annotation by Michelle Graham. GO Biological Process: flower development	SoyBase	N/A	ISS
GO:0010102	GO-bp	Annotation by Michelle Graham. GO Biological Process: lateral root morphogenesis	SoyBase	N/A	ISS
GO:0010432	GO-bp	Annotation by Michelle Graham. GO Biological Process: bract development	SoyBase	N/A	ISS
GO:0010451	GO-bp	Annotation by Michelle Graham. GO Biological Process: floral meristem growth	SoyBase	N/A	ISS
GO:0010582	GO-bp	Annotation by Michelle Graham. GO Biological Process: floral meristem determinacy	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0003677	GO-mf	Annotation by Michelle Graham. GO Molecular Function: DNA binding	SoyBase	N/A	ISS
GO:0003700	GO-mf	Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding transcription factor activity	SoyBase	N/A	ISS
PF00847	PFAM	AP2 domain	JGI		ISS
UniRef100_G7JK99	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Ethylene-responsive transcription factor n=1 Tax=Medicago truncatula RepID=G7JK99_MEDTR	SoyBase	E_val: 3.00E-118	ISS
UniRef100_UPI0002338D74	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI0002338D74 related cluster n=1 Tax=unknown RepID=UPI0002338D74	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma07g37990

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma07g37990

Paralog	Evidence	Comments
Glyma17g02711	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma07g37990 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.07g250100	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma07g37990

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma07g37990

Limit To All Plant Sequences

>Glyma07g37990.2   sequence type=CDS   gene model=Glyma07g37990   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTCAACCTCGAGAACCTCATCAGATACACCCTTCAAAGGATATGATCCTAGCCAAACTCAAATGTGTCTCTCTCTCCTCCAACGCAACACTTCTCCTTGTGGTGAGAGGAGGGGCAGAAGGAAGCAAGCAGAACCAGGGAGGTTCCTTGGTGTGAGGAGGCGCCCTTGGGGTCGATATGCTGCTGAAATTAGAGACCCCACAACCAAAGAGAGGCATTGGCTTGGCACATTTGACACTGCTCAAGAAGCAGCTCTTGCTTATGACAGAGCTGCTCTGTCCATGAAAGGAAGCCAAGCTAGAACCAACTTTGTTTACTCTGATAACATCAACTTCCACACTCTCCAGCTTTCTCCTATGAATGTTCAAGTTCAACCTCTCTTGCCAGCTTCACAGTTCCTCACTACCACCACCACTCAGACCAACCAAAATAGCCACTTTCAGGTTATTCACAGTACTCCAAACTGTGGAAACCCCTCCCCATTGAACAATGACATGTGTGTTGAAACCACATATGGGTCAGCTCAGGATGATAATTTCTTCTTTTCCAGTGATTCTAACTCGGGCTATCTCGAATGCATAGTTCCTGATGATTGCTTCAGACCTGCTTCATCCAGTTCCAACAGTTCAAACTCCAGAAAGAGCAACGTGAGTGATCAAAAGGCTAACACAAGCTCCATGGAGAGTACTAATCACCATCATCATCAGTACTCACATGTTGACATGACTTCATTCTCTCAAGAAGGCATTGAAATGGCACCAAGGGCATCTTATAACTTTTCAGATTTTTGTTATCAAAGTGAAGTGAGTCAAGGATCATGGGATGATCAGCAGTCATGGGATTGGAATAGCAGTGAACTTTCAGCTATATTTAAGAACCCAATGAGGGTGGAAAATGGGTGCATGGATGCATTATGCCCCATAAATGATAGTCCTAGTTCAAGCTATGGGCTAATGAATGAGGCTGCTTCTTCTTCTACAACCTGTTCTCCGTCACTTCCACCCTTTGGGGACGTAGACTTGGGATACCCACTCTTCTGA

Predicted protein sequences of Glyma07g37990

Limit To All Plant Sequences

>Glyma07g37990.2   sequence type=predicted peptide   gene model=Glyma07g37990   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSTSRTSSDTPFKGYDPSQTQMCLSLLQRNTSPCGERRGRRKQAEPGRFLGVRRRPWGRYAAEIRDPTTKERHWLGTFDTAQEAALAYDRAALSMKGSQARTNFVYSDNINFHTLQLSPMNVQVQPLLPASQFLTTTTTQTNQNSHFQVIHSTPNCGNPSPLNNDMCVETTYGSAQDDNFFFSSDSNSGYLECIVPDDCFRPASSSSNSSNSRKSNVSDQKANTSSMESTNHHHHQYSHVDMTSFSQEGIEMAPRASYNFSDFCYQSEVSQGSWDDQQSWDWNSSELSAIFKNPMRVENGCMDALCPINDSPSSSYGLMNEAASSSTTCSPSLPPFGDVDLGYPLF*

Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA

U.S. Public Domain