Glyma07g37980 - SoyBase

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Report for Sequence Feature Glyma07g37980

Feature Type:	gene_model
Chromosome:	Gm07
Start:	42860171
stop:	42865463
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma07g37980

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT2G47850	AT	Annotation by Michelle Graham. TAIR10: Zinc finger C-x8-C-x5-C-x3-H type family protein \| chr2:19595953-19598119 FORWARD LENGTH=468	SoyBase	E_val: 6.00E-155	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0003676	GO-mf	Annotation by Michelle Graham. GO Molecular Function: nucleic acid binding	SoyBase	N/A	ISS
GO:0008270	GO-mf	Annotation by Michelle Graham. GO Molecular Function: zinc ion binding	SoyBase	N/A	ISS
KOG1677	KOG	CCCH-type Zn-finger protein	JGI		ISS
PTHR12506	Panther	PROTEIN PHOSPHATASE RELATED	JGI		ISS
PTHR12506:SF11	Panther	ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN	JGI		ISS
PF00642	PFAM	Zinc finger C-x8-C-x5-C-x3-H type (and similar)	JGI		ISS
UniRef100_G7JKA0	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Zinc finger CCCH domain-containing protein n=1 Tax=Medicago truncatula RepID=G7JKA0_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_I1KN18	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1KN18_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma07g37980

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma07g37980

Paralog	Evidence	Comments
Glyma17g02720	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma07g37980 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.07g250000	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma07g37980

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma07g37980

Limit To All Plant Sequences

>Glyma07g37980.1   sequence type=CDS   gene model=Glyma07g37980   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAGCGGTACGGGCGGGCCAGCGAAGGGTCGCAGTCTGATCCGTCGCCGGAATGGACCGTGGCCGCCGACGTCGACGCCGGCCTCGAAGAGTCGTCGTGGCAACTCGGATTACCCGGTGCTGAATCTTACCCTATGCGTCCCGATGAGGCGGATTGTATCTACTATTTGAGAACGGGATTTTGCGGTTACGGCACACGCTGTCGTTTCAACCATCCTCGTGACCGTGCCGCGGTTATTGGAGCTGCGCCGAGGACTGGAGGAGAGTTTCCAGAGCGCGTGGGACAGCCTGTGTGCCAGTACTATATGAGGACGGGATCATGCAAATTTGGTGCGTCCTGCAAGTACCACCATCCTAGGCAGGTGCCAGGCACTGCTACCCCTGTGCCACTAAATTATTATGGATACCCATTGCGAGTGGGTCAGAAAGAGTGTTCCTATTACGTGAAAACTGGACAGTGCAAGTTTGGTGCAACTTGTAAATTCCATCATCCACAGCCTGCAGGCGTCCAAGTTCTAGCACCATCACCAGTTCCTCCAGTTTCACCTCTGCCTGTACCTGTACCTTCACCAATGTATCCAACTGTACATCCCCCATCTGGTCCTTCACAACAACAATATGGTGTACTTGTTGCAAGGCCACCTATGCTACCTGGCTCAGTAGTCCAGGGTCCCTATGGGCCTATGGTAGTGTCCCCTACCATGGTCCCTTTTTCAGGCTGGAGTCCTTATCAGGCTCCTGCCACAAACCCTCTACTTCCATCCAGCACTACATCTAATGTTGGTTCTACACAGCTTTATGGGATAACCCAGCTACCTTCATCAGCAGCTACTTATACTGGACCTTATCAACCTTCTGGTTCTTCAATTGGTCCTTCAGGTGCTAGTCAGAAGGAGCATCCATTTCCAGAAAGGCCTGATCAACCAGAATGTCATCATTACATGAAAACAGGGGACTGTAAATTTGGCCCGTTGTGTAGATATCATCATCCACCAGACAAGAGTGCACCAAAAGCAAATGTAACCCTTAGTCCCGTGGGTCTTCCATTGCGTCCGGGGGCACCACCTTGCACTCATTATACCCAGCGTGGAGTTTGCAAGTTTGGTTCTGCATGCAAATTTGATCATCCTATGGGATCACTGAGTTATAGTCCATCTGCCTCTTCCCTAGCTGATATGCCAGTTGCACCCTATCCTGTGGGTTCCTCAATTGGTACTCTTGCCCTGTCATCTTTGTCATCAGAGTTGCGGCCTGAACTTGGTGCAGGATCCAACAAGGAGTCTGTTGCATCGAGAATGTCTTCAATGAGCACATCGACTGGATCGGTTGGCTTGACCTTGTCAAGCGTTGGTCCCATTTCTCACTCAAGCACCCAACCATCTGCTCAGAGTTCCAGTTCTCCGGAAACTACCAGTGCTACCACAAGTAGCACTGTATCTCACACCTCAAGCTAA

Predicted protein sequences of Glyma07g37980

Limit To All Plant Sequences

>Glyma07g37980.1   sequence type=predicted peptide   gene model=Glyma07g37980   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MERYGRASEGSQSDPSPEWTVAADVDAGLEESSWQLGLPGAESYPMRPDEADCIYYLRTGFCGYGTRCRFNHPRDRAAVIGAAPRTGGEFPERVGQPVCQYYMRTGSCKFGASCKYHHPRQVPGTATPVPLNYYGYPLRVGQKECSYYVKTGQCKFGATCKFHHPQPAGVQVLAPSPVPPVSPLPVPVPSPMYPTVHPPSGPSQQQYGVLVARPPMLPGSVVQGPYGPMVVSPTMVPFSGWSPYQAPATNPLLPSSTTSNVGSTQLYGITQLPSSAATYTGPYQPSGSSIGPSGASQKEHPFPERPDQPECHHYMKTGDCKFGPLCRYHHPPDKSAPKANVTLSPVGLPLRPGAPPCTHYTQRGVCKFGSACKFDHPMGSLSYSPSASSLADMPVAPYPVGSSIGTLALSSLSSELRPELGAGSNKESVASRMSSMSTSTGSVGLTLSSVGPISHSSTQPSAQSSSSPETTSATTSSTVSHTSS*

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