SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
|
A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT5G07900 | AT | Annotation by Michelle Graham. TAIR10: Mitochondrial transcription termination factor family protein | chr5:2520188-2521405 FORWARD LENGTH=405 | SoyBase | E_val: 1.00E-63 | ISS |
| GO:0008150 | GO-bp | Annotation by Michelle Graham. GO Biological Process: biological process | SoyBase | N/A | ISS |
| GO:0009507 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: chloroplast | SoyBase | N/A | ISS |
| GO:0016020 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: membrane | SoyBase | N/A | ISS |
| GO:0003674 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: molecular function | SoyBase | N/A | ISS |
| KOG1267 | KOG | Mitochondrial transcription termination factor, mTERF | JGI | ISS | |
| PTHR13068 | Panther | CGI-12 PROTEIN-RELATED | JGI | ISS | |
| PTHR13068:SF3 | Panther | SUBFAMILY NOT NAMED | JGI | ISS | |
| PF02536 | PFAM | mTERF | JGI | ISS | |
| UniRef100_I1KN17 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Glycine max RepID=I1KN17_SOYBN | SoyBase | E_val: 0 | ISS |
| UniRef100_Q9SD94 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Mitochondrial transcription termination factor family protein n=1 Tax=Arabidopsis thaliana RepID=Q9SD94_ARATH | SoyBase | E_val: 5.00E-61 | ISS |
|
Glyma07g37970 not represented in the dataset |
Glyma07g37970 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma17g02730 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.07g249900 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma07g37970.2 sequence type=transcript gene model=Glyma07g37970 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high TCACTACCCAATTTACTATTTACTCTACTAATTTTGTGGTGCCACCCCCATCCGTCCTCTAGCAACGCAAGCATGTTGAATTGGCACAAGCACAGTCACAGAGCCCTTCTCCATCTGAAGACCTCGGCACCAAGATCTCAACATCAACATCATCCTCTTATCAAATTCTGCAGCACCATTTCGGACTCCTTCACAGTCTCCTACCTCATCACCCGCTTCGGCTTCTCCCCAGAGACTGCCCTCAGCATCTCCCGCAAGTTCCGCCTCGACAGCCCCCACAGGCCCGACTCCGTTCTCGCCTTCTTCGCCACCCACGGCTTCTCTCCTTTCCAAATCCGCCAAGTCATCCAAGGCCAACACACCATCCTCCTCTGCGACCCCAACAACCTCATCCTCCCCAAATTCCAGTTCCTCCGCTCCAAAGGCGCCTCCACCTCCCACATCATCCGCATCGCCACCGCTTCCCCCACCTTCCTCTCCCGCTCCCTCGACAGCCACATCGTCCCCGCCTACCAATTCCTCCGAACCTTCCTCGTCTCCGACGAACTCATCATCCGATGTCTCAGCCGCGACTCCTCCGTCTTTTTCTCCGACGACCCCCGCTTCCCGCTTACCGCCGAATTCCTCCTCGATAACGGCTTCACGCGTTCCGCCGTTGCCAGGCTGCTGCACATGTGTCCCTCTGTTCTCTGCTCACGTGACTTACCCGACACGGTGCATGCACTCAAGCAATTAGGGTTTGATACCTCCGCCCCCAATTTCAGTGCTGCATTGGTCGCGAAAAGCACAGTGAATAAAACCAACTGGGGTGAGTCGGTTAGGGTTTTCAAGAAGTGGGGTTGGTCCCAGGAACACGTTCTTATGGCGTTTAAGAAGCATCCTTCTTGTATGCTGACGGAACCTGATGAGATAGATGCTGTGTTCAGTTATTGGGTTAAGGAGTTAGGTGGGAGTTCTTTGGAGCTTGCCAAGTATCCTGTTATTTTTCGGTTGAGCCTTAAGAAGTGGATTGCTCCCAGGGCTTCCGTCGTTCGGTTTCTTGCAGCGCAAGGTCTATTGGAAAGGAGTGGCAACATGGTCACGATGTTTATTATGTCTGAGAAAAGATTCCTGGACACGTTTGTGAAACGTTATGAGAAGCATTCGTCTCAGTTGTTGAAGATGTATAAGGAAAGTGTGAATATGAATGTTGCCAATAGCAAGGAGAACAAGAAGAAAACTTGCTTGTAGTTTAACAGCCTTGCGCTGTTGTTCACTTGGAATACATGATATGTTCTTGTGTCTACTGAAGATCTGACGAACAATCATGCTAGCTTGTTTATGGGATTTGTTATTTTGCAGGAGTTTTGCCTGTGGAAATTTGTTGTATGTTTTCCTGCAGAAGCTAAATAAAGGAAGCACGAGTCTTTTGATGAAAGAGAGAATTGATCATGCTTGACTGTGAACTTTGTATTTGGTACAAACTACAAAGACTTTGGAGCTTCCATGATGTTGATGTGCATACTGCATACCTATGCTCATTAGTACATTGGCGATTGAAAAAAAAATGGGAAAAGATGTTGGATGTGCAATACAGCTATATAAAACAGGTAAACAGATTTCATATGGATATTTCAGGTGAAAAAAATGGAGCATTCTATAAACCAGGCAAATAAGGGTTGATTTGAATGATTATTTGGTAACATCCTCAATCTCATTAAAATACTTATTTCTGCATATAAATTGTTGCTCTTGGTCAAATTCTATCTTCTTTTTTGGGAGGATGCTGTTCTTCTCACCTGTCAAGCAGGTTATTTTGTGTGAATTATTTAATTTAAATATTGCTGCTTATTTCATAATTTCATACTCATCCTTCTGGGATGTGTGTATTTAGTAGAGTTGTTCCAGATTTTGGCTTGCCTTGTTTCATTGTTTTTCTTTAGTGAAATGAGCTGATACTTAAAAGAAGCTATCCGCCTTTTGAGGTAAAGCACCTACTCTTCATAAAACAGATATGATATGATGTTTTTCTGAGTAGCTGTTTTTATTTTGCAATAGATGACTTTTTCTGTGTGGTTTATTGTAAACTGTGGAAGACTAAACTAGTAGATTTTAGTTGAATGGTTTGATGTTTGCTCACCACAGGATTCAGAGTTTATTTATATATTTGTTTGGCAATGCTCGTATTAAATCTCAAATTCCTATGTGATTATTTGACCTTTTTTATGCATCTTTCATGCTGAATTATAGAGTATATGGTTGTAAATAACACATTAATTTGAACGATGAATTACATTGTTATATCAACTTTGATGCATGATTTTCAGAGTTCCCTATTAATGGGGAAAAAGAGTTTGTCCCCAAGCCTATTGAATCTTTAGACCAATCTTGTCTGAGCTTTGTTTTGAACTTCATTTACAATTTTACTGACTAGTAACAAGCAATCACAAATGAACTTATTTCACATGTTTAAGACTGGTTTGAATGTGTAAAATTGGGAATTCAGCATTGCTTGATTTCTCCTCTTACACCTGATTCTGTTTTCTTTTTCACATGCATCATTGCGACTGTTTAGATAGCTTTGGTTTGTGACAAAAGTGATTCCTTGTAGTTTTCTTTTTTATATTCTTTGGTCGAGATGAAGCTGTACAAACTAAATTTTGTCTTGCAAGTTGCAAGCCTGTTCTAAGATCAAAATTGGAAGAGGTATATCAAGAGGGGGGAGAAGAAAGTTAGGAAATGAATCTTCACTCTTCATAGAATAGCATGATATGCCCAACAAAGTAGATGCTCATGCCAATACCAAGTGTTCAAGCATTGATTGAAGAAAAACAATAAACTTCTAAGTACATACTCGCAGGCTTCATGCAACTGGCAATACCCTGTATTACTGTATATTTAAGCCCTCATGGCTCAGGAAGTTAAAGTAAGTTCATCCACTGATTTATTGGGTTATTATCATTCACGTTTTGAAGTAGTGTGCAAGTTGATCTGCATTCGTGTTATCACGCAAAACAAAAGACATTGATCCGAAACTCCTTGTCAAGTGAAGTAATGGACTACTTATGCGAGTCAGCATTACTCACCAAGCAAGTTTGCTCGCCCGAGCTTTCCCGTAGGCCGTAGCAAATAGCATGTGATATTGTGATGATTACTTTACAATCTCTATTGACATACTAGTATATGGATTTCTGTGGACATGATAGCTAGCAGCCTAGCAGAAGGGATTGTACTTGTTTTTATACTTTGTCTTATCTTTGATGGGGGACAAGCTTGAGCATCCCATTAAATAATTATCCTTTCCTGTTTTTATCACACCAACAAATTATATTATTATTTTATAGGATAATAATACATTAGTAGCTCCTTGATGATCTTTCATTTAATTTTT
>Glyma07g37970.1 sequence type=CDS gene model=Glyma07g37970 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGTTGAATTGGCACAAGCACAGTCACAGAGCCCTTCTCCATCTGAAGACCTCGGCACCAAGATCTCAACATCAACATCATCCTCTTATCAAATTCTGCAGCACCATTTCGGACTCCTTCACAGTCTCCTACCTCATCACCCGCTTCGGCTTCTCCCCAGAGACTGCCCTCAGCATCTCCCGCAAGTTCCGCCTCGACAGCCCCCACAGGCCCGACTCCGTTCTCGCCTTCTTCGCCACCCACGGCTTCTCTCCTTTCCAAATCCGCCAAGTCATCCAAGGCCAACACACCATCCTCCTCTGCGACCCCAACAACCTCATCCTCCCCAAATTCCAGTTCCTCCGCTCCAAAGGCGCCTCCACCTCCCACATCATCCGCATCGCCACCGCTTCCCCCACCTTCCTCTCCCGCTCCCTCGACAGCCACATCGTCCCCGCCTACCAATTCCTCCGAACCTTCCTCGTCTCCGACGAACTCATCATCCGATGTCTCAGCCGCGACTCCTCCGTCTTTTTCTCCGACGACCCCCGCTTCCCGCTTACCGCCGAATTCCTCCTCGATAACGGCTTCACGCGTTCCGCCGTTGCCAGGCTGCTGCACATGTGTCCCTCTGTTCTCTGCTCACGTGACTTACCCGACACGGTGCATGCACTCAAGCAATTAGGGTTTGATACCTCCGCCCCCAATTTCAGTGCTGCATTGGTCGCGAAAAGCACAGTGAATAAAACCAACTGGGGTGAGTCGGTTAGGGTTTTCAAGAAGTGGGGTTGGTCCCAGGAACACGTTCTTATGGCGTTTAAGAAGCATCCTTCTTGTATGCTGACGGAACCTGATGAGATAGATGCTGTGTTCAGTTATTGGGTTAAGGAGTTAGGTGGGAGTTCTTTGGAGCTTGCCAAGTATCCTGTTATTTTTCGGTTGAGCCTTAAGAAGTGGATTGCTCCCAGGGCTTCCGTCGTTCGGTTTCTTGCAGCGCAAGGTCTATTGGAAAGGAGTGGCAACATGGTCACGATGTTTATTATGTCTGAGAAAAGATTCCTGGACACGTTTGTGAAACGTTATGAGAAGCATTCGTCTCAGTTGTTGAAGATGTATAAGGAAAGTGTGAATATGAATGTTGCCAATAGCAAGGAGAACAAGAAGAAAACTTGCTTGTAG >Glyma07g37970.2 sequence type=CDS gene model=Glyma07g37970 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGTTGAATTGGCACAAGCACAGTCACAGAGCCCTTCTCCATCTGAAGACCTCGGCACCAAGATCTCAACATCAACATCATCCTCTTATCAAATTCTGCAGCACCATTTCGGACTCCTTCACAGTCTCCTACCTCATCACCCGCTTCGGCTTCTCCCCAGAGACTGCCCTCAGCATCTCCCGCAAGTTCCGCCTCGACAGCCCCCACAGGCCCGACTCCGTTCTCGCCTTCTTCGCCACCCACGGCTTCTCTCCTTTCCAAATCCGCCAAGTCATCCAAGGCCAACACACCATCCTCCTCTGCGACCCCAACAACCTCATCCTCCCCAAATTCCAGTTCCTCCGCTCCAAAGGCGCCTCCACCTCCCACATCATCCGCATCGCCACCGCTTCCCCCACCTTCCTCTCCCGCTCCCTCGACAGCCACATCGTCCCCGCCTACCAATTCCTCCGAACCTTCCTCGTCTCCGACGAACTCATCATCCGATGTCTCAGCCGCGACTCCTCCGTCTTTTTCTCCGACGACCCCCGCTTCCCGCTTACCGCCGAATTCCTCCTCGATAACGGCTTCACGCGTTCCGCCGTTGCCAGGCTGCTGCACATGTGTCCCTCTGTTCTCTGCTCACGTGACTTACCCGACACGGTGCATGCACTCAAGCAATTAGGGTTTGATACCTCCGCCCCCAATTTCAGTGCTGCATTGGTCGCGAAAAGCACAGTGAATAAAACCAACTGGGGTGAGTCGGTTAGGGTTTTCAAGAAGTGGGGTTGGTCCCAGGAACACGTTCTTATGGCGTTTAAGAAGCATCCTTCTTGTATGCTGACGGAACCTGATGAGATAGATGCTGTGTTCAGTTATTGGGTTAAGGAGTTAGGTGGGAGTTCTTTGGAGCTTGCCAAGTATCCTGTTATTTTTCGGTTGAGCCTTAAGAAGTGGATTGCTCCCAGGGCTTCCGTCGTTCGGTTTCTTGCAGCGCAAGGTCTATTGGAAAGGAGTGGCAACATGGTCACGATGTTTATTATGTCTGAGAAAAGATTCCTGGACACGTTTGTGAAACGTTATGAGAAGCATTCGTCTCAGTTGTTGAAGATGTATAAGGAAAGTGTGAATATGAATGTTGCCAATAGCAAGGAGAACAAGAAGAAAACTTGCTTGTAG
>Glyma07g37970.1 sequence type=predicted peptide gene model=Glyma07g37970 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MLNWHKHSHRALLHLKTSAPRSQHQHHPLIKFCSTISDSFTVSYLITRFGFSPETALSISRKFRLDSPHRPDSVLAFFATHGFSPFQIRQVIQGQHTILLCDPNNLILPKFQFLRSKGASTSHIIRIATASPTFLSRSLDSHIVPAYQFLRTFLVSDELIIRCLSRDSSVFFSDDPRFPLTAEFLLDNGFTRSAVARLLHMCPSVLCSRDLPDTVHALKQLGFDTSAPNFSAALVAKSTVNKTNWGESVRVFKKWGWSQEHVLMAFKKHPSCMLTEPDEIDAVFSYWVKELGGSSLELAKYPVIFRLSLKKWIAPRASVVRFLAAQGLLERSGNMVTMFIMSEKRFLDTFVKRYEKHSSQLLKMYKESVNMNVANSKENKKKTCL* >Glyma07g37970.2 sequence type=predicted peptide gene model=Glyma07g37970 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MLNWHKHSHRALLHLKTSAPRSQHQHHPLIKFCSTISDSFTVSYLITRFGFSPETALSISRKFRLDSPHRPDSVLAFFATHGFSPFQIRQVIQGQHTILLCDPNNLILPKFQFLRSKGASTSHIIRIATASPTFLSRSLDSHIVPAYQFLRTFLVSDELIIRCLSRDSSVFFSDDPRFPLTAEFLLDNGFTRSAVARLLHMCPSVLCSRDLPDTVHALKQLGFDTSAPNFSAALVAKSTVNKTNWGESVRVFKKWGWSQEHVLMAFKKHPSCMLTEPDEIDAVFSYWVKELGGSSLELAKYPVIFRLSLKKWIAPRASVVRFLAAQGLLERSGNMVTMFIMSEKRFLDTFVKRYEKHSSQLLKMYKESVNMNVANSKENKKKTCL*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
|
|
|
