SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT1G09070 | AT | Annotation by Michelle Graham. TAIR10: soybean gene regulated by cold-2 | chr1:2927767-2928741 FORWARD LENGTH=324 | SoyBase | E_val: 2.00E-44 | ISS |
| GO:0006612 | GO-bp | Annotation by Michelle Graham. GO Biological Process: protein targeting to membrane | SoyBase | N/A | ISS |
| GO:0006623 | GO-bp | Annotation by Michelle Graham. GO Biological Process: protein targeting to vacuole | SoyBase | N/A | ISS |
| GO:0006820 | GO-bp | Annotation by Michelle Graham. GO Biological Process: anion transport | SoyBase | N/A | ISS |
| GO:0006862 | GO-bp | Annotation by Michelle Graham. GO Biological Process: nucleotide transport | SoyBase | N/A | ISS |
| GO:0006888 | GO-bp | Annotation by Michelle Graham. GO Biological Process: ER to Golgi vesicle-mediated transport | SoyBase | N/A | ISS |
| GO:0009611 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to wounding | SoyBase | N/A | ISS |
| GO:0009612 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to mechanical stimulus | SoyBase | N/A | ISS |
| GO:0009646 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to absence of light | SoyBase | N/A | ISS |
| GO:0010200 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to chitin | SoyBase | N/A | ISS |
| GO:0010363 | GO-bp | Annotation by Michelle Graham. GO Biological Process: regulation of plant-type hypersensitive response | SoyBase | N/A | ISS |
| GO:0015696 | GO-bp | Annotation by Michelle Graham. GO Biological Process: ammonium transport | SoyBase | N/A | ISS |
| GO:0015802 | GO-bp | Annotation by Michelle Graham. GO Biological Process: basic amino acid transport | SoyBase | N/A | ISS |
| GO:0043069 | GO-bp | Annotation by Michelle Graham. GO Biological Process: negative regulation of programmed cell death | SoyBase | N/A | ISS |
| GO:0043090 | GO-bp | Annotation by Michelle Graham. GO Biological Process: amino acid import | SoyBase | N/A | ISS |
| GO:0043269 | GO-bp | Annotation by Michelle Graham. GO Biological Process: regulation of ion transport | SoyBase | N/A | ISS |
| GO:0000326 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: protein storage vacuole | SoyBase | N/A | ISS |
| GO:0005783 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: endoplasmic reticulum | SoyBase | N/A | ISS |
| GO:0005886 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane | SoyBase | N/A | ISS |
| GO:0005515 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: protein binding | SoyBase | N/A | ISS |
| PF00168 | PFAM | C2 domain | JGI | ISS | |
| UniRef100_B8XJZ3 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Cold-regulated protein n=1 Tax=Glycine max RepID=B8XJZ3_SOYBN | SoyBase | E_val: 2.00E-79 | ISS |
| UniRef100_I1KN05 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1KN05_SOYBN | SoyBase | E_val: 0 | ISS |
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Glyma07g37790 not represented in the dataset |
Glyma07g37790 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.07g248600 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma07g37790.1 sequence type=CDS gene model=Glyma07g37790 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGAACACAGAACCCTAGAACTCAACCTGGCTTCAGCAAAGGATCTCAAAGACTTGAATATATTCTCAAAGATGGATGTATATGCTGTGCTTTCACTCTCCGGCGATCAAAAGACCAAGACTCCCGTCCACAGAAACGGCGGCACCAACCCAACATGGAATTTTCCGGTCAAGTTCACTTTTGATGAATCGGTGGCGCGGCAGAACCGTTTGGCCCTCGAAATCAAGATCCGCTCCGAGCGCGCCCTCGCCACCGATAAGGACATCGGCCAGGTCCACGTTCCTCTCATGGAACTCCTCAAGCAACCTGGCGACGGTAAATCCTTCCAGCACGTTAGTTACCAGGTCAGAAAACCCTCCGGCAAACCCAAGGGAGCCCTCAATTTCTCCTACAAATTTGGCGATGAATTCGCAGCCCCAGCCAAGGTATCAGCACCCGCACCTACCTCGCCTTCTCACAAGGTGGACCCCGTCACGGCTTATCCTGCTCCCGCGGTGGGCTCCACTTCTTCTGCCGCGTATCCCGCCATGTATCCTCCGCCGCCGCCGCCACAATATGCCTATCCTCCGCCGCCTCAACCCGCTCACGGATACGGATACGCTCCACAACATGGATACGGTTACGCGCCACAAGCGGCTTATGGGTACGCGCCACAAGCGGCTTATGGGTACGCGCCACAACCCGGGTACGGTTACGCTCCTCCTCCTCCTGCTGCTGCAGCAGTTCAAAGACCGGGGAAGAACAATTTGGGAATGGGATTGGGTGCGGGGTTGCTTGGAGGAGCCTTGGGTGGACTTCTAATTGGGGACATGATTTCTGATGCCGGTTCTTACGACGCTGGTTTTGGAGATTTCGGTGGATTTGATTTTTAA
>Glyma07g37790.1 sequence type=predicted peptide gene model=Glyma07g37790 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MEHRTLELNLASAKDLKDLNIFSKMDVYAVLSLSGDQKTKTPVHRNGGTNPTWNFPVKFTFDESVARQNRLALEIKIRSERALATDKDIGQVHVPLMELLKQPGDGKSFQHVSYQVRKPSGKPKGALNFSYKFGDEFAAPAKVSAPAPTSPSHKVDPVTAYPAPAVGSTSSAAYPAMYPPPPPPQYAYPPPPQPAHGYGYAPQHGYGYAPQAAYGYAPQAAYGYAPQPGYGYAPPPPAAAAVQRPGKNNLGMGLGAGLLGGALGGLLIGDMISDAGSYDAGFGDFGGFDF*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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